CX288586 | Citrus Genome Database

Overview


Name	CX288586
Unique Name	CX288586
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	527

Libraries


Library Name	Type
IF1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX288586 vs. ExPASy Swiss-Prot
Match: ENO_RHOOB (Enolase OS=Rhodococcus opacus (strain B4) GN=eno PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.270e-25
Identity = 55/127 (43.31%), Postives = 78/127 (61.42%), Query Frame = 3

Query:    3 LELLNTAIAKAGYT--GKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKV 377
            L+L++ A+ K G      V + +DVAA+EFY     Y         +GS + + D +   Y   +  YPIVSIEDP D+DDW+ +  LT ++G KVQ+VGDDL VTNP+R+E+ I +   NALL+KV
Sbjct:  218 LDLISLAVGKTGLVLGTDVALALDVAATEFYTDGTGYKF-------EGSNR-TADEMAAFYAELVDAYPIVSIEDPLDEDDWDGWVALTDQIGNKVQLVGDDLFVTNPERLEEGIVKGAANALLVKV 336

HSP 2 Score: 28.4906 bits (62), Expect = 7.270e-25
Identity = 11/23 (47.83%), Postives = 20/23 (86.96%), Query Frame = 2

Query:  458 KVNQIGSVTESIEAVRMSKQAGW 526
            KVNQIG++TE+++AV ++ + G+
Sbjct:  335 KVNQIGTLTETLDAVDLAHRNGY 357

[Close]

BLAST of CX288586 vs. ExPASy Swiss-Prot
Match: ENO_RHOBA (Enolase OS=Rhodopirellula baltica GN=eno PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 7.270e-25
Identity = 58/128 (45.31%), Postives = 84/128 (65.62%), Query Frame = 3

Query:    3 LELLNTAIAKAGYTG--KVVIGMDVAASEFYG-SDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKV 377
            L+++ TAI KAGY    +V I +D A++EFY  S   Y L    +NN    ++SGD + D    +   YPI SIED  D+DDWE + KLT+++G+KVQ+VGDDL VTN +R+++ I E   N++L+KV
Sbjct:  219 LDVIMTAIDKAGYKAGEQVWIALDAASTEFYDKSSGKYSL----DNN----QMSGDEMVDFLAGWCDKYPICSIEDGCDEDDWETWKKLTTKIGDKVQLVGDDLFVTNVERLQRGIDEGIANSILIKV 338

HSP 2 Score: 30.0314 bits (66), Expect = 7.270e-25
Identity = 11/23 (47.83%), Postives = 21/23 (91.30%), Query Frame = 2

Query:  458 KVNQIGSVTESIEAVRMSKQAGW 526
            KVNQIG++TE+I+A++++ + G+
Sbjct:  337 KVNQIGTMTETIDAIQLAHRNGY 359

[Close]

BLAST of CX288586 vs. ExPASy Swiss-Prot
Match: ENO_FINM2 (Enolase OS=Finegoldia magna (strain ATCC 29328) GN=eno PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 7.270e-25
Identity = 58/127 (45.67%), Postives = 84/127 (66.14%), Query Frame = 3

Query:    3 LELLNTAIAKAGYT-GK-VVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKV 377
            L+ +  AI KAGY  GK V+I +D AASEFY  D  Y++       D + + S D + + YK+ +  YPI+SIED   +DDW+ + KLT E+G K+Q+VGDDL VTN KR++K I+   CN++L+K+
Sbjct:  219 LQTIVEAIKKAGYEPGKDVMIAIDAAASEFY-EDGKYNMA-----GDNAVRTS-DEMIEYYKNLVEKYPIISIEDGLAEDDWDGWKKLTQELGSKIQLVGDDLFVTNVKRLQKGIEMGVCNSILIKL 338

HSP 2 Score: 30.0314 bits (66), Expect = 7.270e-25
Identity = 10/23 (43.48%), Postives = 21/23 (91.30%), Query Frame = 2

Query:  458 KVNQIGSVTESIEAVRMSKQAGW 526
            K+NQIG++TE+++A+ ++K+ G+
Sbjct:  337 KLNQIGTLTETLDAIELAKRHGY 359

[Close]

BLAST of CX288586 vs. ExPASy Swiss-Prot
Match: ENO_GEOSM (Enolase OS=Geobacter sp. (strain M21) GN=eno PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.270e-25
Identity = 52/127 (40.94%), Postives = 83/127 (65.35%), Query Frame = 3

Query:    3 LELLNTAIAKAGYTG--KVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKV 377
            LE++  AI KAGY    +V++ +DVA+SE +  +  Y L      N+   K + D L D Y++ ++ YPIVSIED   ++DW+ + KLT  +G+++QIVGDDL VTNP  +++ IK+   N++L+K+
Sbjct:  219 LEVIMEAIVKAGYKPGEEVLLALDVASSELF-ENGVYTLE-----NEAESKKTADQLVDFYENLVNKYPIVSIEDGMAENDWDGWKKLTDRLGKRIQIVGDDLFVTNPSILKEGIKKGIANSILIKL 339

HSP 2 Score: 33.4982 bits (75), Expect = 7.270e-25
Identity = 12/23 (52.17%), Postives = 22/23 (95.65%), Query Frame = 2

Query:  458 KVNQIGSVTESIEAVRMSKQAGW 526
            K+NQIG++TE+++A+ M+K+AG+
Sbjct:  338 KLNQIGTLTETLDAIEMAKRAGY 360

[Close]

BLAST of CX288586 vs. ExPASy Swiss-Prot
Match: ENO_GEOBB (Enolase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=eno PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 7.270e-25
Identity = 52/127 (40.94%), Postives = 83/127 (65.35%), Query Frame = 3

Query:    3 LELLNTAIAKAGYTG--KVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKV 377
            LE++  AI KAGY    +V++ +DVA+SE +  +  Y L      N+   K + D L D Y++ ++ YPIVSIED   ++DW+ + KLT  +G+++QIVGDDL VTNP  +++ IK+   N++L+K+
Sbjct:  219 LEVIMEAIVKAGYKPGEEVLLALDVASSELF-ENGVYTLE-----NEAESKKTADQLVDFYENLVNKYPIVSIEDGMAENDWDGWKKLTDRLGKRIQIVGDDLFVTNPSILKEGIKKGIANSILIKL 339

HSP 2 Score: 33.4982 bits (75), Expect = 7.270e-25
Identity = 12/23 (52.17%), Postives = 22/23 (95.65%), Query Frame = 2

Query:  458 KVNQIGSVTESIEAVRMSKQAGW 526
            K+NQIG++TE+++A+ M+K+AG+
Sbjct:  338 KLNQIGTLTETLDAIEMAKRAGY 360

[Close]

BLAST of CX288586 vs. ExPASy Swiss-Prot
Match: ENO_RHOSR (Enolase OS=Rhodococcus sp. (strain RHA1) GN=eno PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.462e-25
Identity = 55/127 (43.31%), Postives = 78/127 (61.42%), Query Frame = 3

Query:    3 LELLNTAIAKAGYT--GKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKV 377
            L+L++ AI K G      V + +DVAA+EFY     Y         +GS + + + +   Y   +  YPIVSIEDP D+DDW+ +  LT ++G KVQ+VGDDL VTNP+R+E+ I +   NALL+KV
Sbjct:  218 LDLISVAIGKTGLVLGTDVALALDVAATEFYTDGTGYKF-------EGSNRTAAE-MSAFYAELVDAYPIVSIEDPLDEDDWDGWVALTDQIGNKVQLVGDDLFVTNPERLEEGIVKGAANALLVKV 336

HSP 2 Score: 28.4906 bits (62), Expect = 9.462e-25
Identity = 11/23 (47.83%), Postives = 20/23 (86.96%), Query Frame = 2

Query:  458 KVNQIGSVTESIEAVRMSKQAGW 526
            KVNQIG++TE+++AV ++ + G+
Sbjct:  335 KVNQIGTLTETLDAVDLAHRNGY 357

[Close]

BLAST of CX288586 vs. ExPASy Swiss-Prot
Match: ENO_MYCGI (Enolase OS=Mycobacterium gilvum (strain PYR-GCK) GN=eno PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.462e-25
Identity = 56/127 (44.09%), Postives = 77/127 (60.63%), Query Frame = 3

Query:    3 LELLNTAIAKAGYT--GKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKV 377
            L+L+ TAI  AG      V + +DVAA+EFY     Y   F++E     Q      +   Y+  I  YP+VSIEDP  +DDW+ +  LTS +G++VQ+VGDDL VTNP+R+E  I+    NALL+KV
Sbjct:  218 LDLIGTAIEGAGLKIGSDVALALDVAATEFYTDGTGYA--FEKETRTAEQ------MAQFYEQLIGAYPLVSIEDPLSEDDWDGWVALTSAIGDRVQLVGDDLFVTNPERLEDGIERGAGNALLVKV 336

HSP 2 Score: 30.8018 bits (68), Expect = 9.462e-25
Identity = 12/23 (52.17%), Postives = 20/23 (86.96%), Query Frame = 2

Query:  458 KVNQIGSVTESIEAVRMSKQAGW 526
            KVNQIG++TE+++AV ++  AG+
Sbjct:  335 KVNQIGTLTETLDAVSLAHHAGY 357

[Close]

BLAST of CX288586 vs. ExPASy Swiss-Prot
Match: ENO_GEOSF (Enolase OS=Geobacter sp. (strain FRC-32) GN=eno PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.231e-24
Identity = 52/127 (40.94%), Postives = 83/127 (65.35%), Query Frame = 3

Query:    3 LELLNTAIAKAGYTG--KVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKV 377
            LE++  AI KAG+     V++ +DVA+SE + SD  Y L      N+   K + D L D Y++ ++ YPI+SIED   ++DWE + K+T  +G+++QIVGDDL VTNPK +++ I +   N++L+K+
Sbjct:  219 LEVIIEAIQKAGFKPGEDVLLALDVASSELF-SDGVYTLE-----NEAQPKKTADQLIDFYENLVNKYPIISIEDGMAENDWEGWKKMTERLGKRIQIVGDDLFVTNPKILKEGIDKGIANSILIKL 339

HSP 2 Score: 33.4982 bits (75), Expect = 1.231e-24
Identity = 12/23 (52.17%), Postives = 22/23 (95.65%), Query Frame = 2

Query:  458 KVNQIGSVTESIEAVRMSKQAGW 526
            K+NQIG++TE+++A+ M+K+AG+
Sbjct:  338 KLNQIGTLTETLDAIEMAKRAGY 360

[Close]

BLAST of CX288586 vs. ExPASy Swiss-Prot
Match: ENO_NOCFA (Enolase OS=Nocardia farcinica GN=eno PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.231e-24
Identity = 54/127 (42.52%), Postives = 78/127 (61.42%), Query Frame = 3

Query:    3 LELLNTAIAKAGYT--GKVVIGMDVAASEFYGSDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKV 377
            L+L+  AIAK G      V + +DVAA+EFY S   Y         +G+ + S + +   Y   +  YP+VSIEDP  +DDW+ +  LT ++G+K+Q+VGDDL VTNP+R+E  I +   NALL+KV
Sbjct:  218 LDLIAQAIAKTGLKLGSDVALALDVAATEFYTSGSGYKF-------EGTVR-SAEEMAQFYSELLGAYPLVSIEDPLSEDDWDGWVALTDQIGDKIQLVGDDLFVTNPERLEDGIAKGAANALLVKV 336

HSP 2 Score: 29.261 bits (64), Expect = 1.231e-24
Identity = 11/23 (47.83%), Postives = 20/23 (86.96%), Query Frame = 2

Query:  458 KVNQIGSVTESIEAVRMSKQAGW 526
            KVNQIG++TE+++AV ++ + G+
Sbjct:  335 KVNQIGTLTETLDAVELAHRNGY 357

[Close]

BLAST of CX288586 vs. ExPASy Swiss-Prot
Match: ENO_ALKOO (Enolase OS=Alkaliphilus oremlandii (strain OhILAs) GN=eno PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.231e-24
Identity = 53/128 (41.41%), Postives = 84/128 (65.62%), Query Frame = 3

Query:    3 LELLNTAIAKAGYTG--KVVIGMDVAASEFYG-SDKTYDLNFKEENNDGSQKISGDALKDLYKSFISDYPIVSIEDPFDQDDWEHYAKLTSEVGEKVQIVGDDLLVTNPKRVEKAIKEKTCNALLLKV 377
            L+++  AI K GYT    V + +DVAA+E Y  ++K Y L+      +G  K + + + D Y+  I+ YPI+SIED   ++DW+ +  +T  +G+K+QIVGDDL VTN +R+EK IK+ T N++L+K+
Sbjct:  219 LQVIVEAIEKTGYTPGVDVKLALDVAATELYDETEKLYRLS-----GEGVVKTAAEMV-DFYEELINKYPIISIEDGLSEEDWDGWKLMTERLGKKIQIVGDDLFVTNTERLEKGIKQGTANSILIKL 340

HSP 2 Score: 34.2686 bits (77), Expect = 1.231e-24
Identity = 12/23 (52.17%), Postives = 22/23 (95.65%), Query Frame = 2

Query:  458 KVNQIGSVTESIEAVRMSKQAGW 526
            K+NQIG++TE+++A+ M+K+AG+
Sbjct:  339 KLNQIGTITETLDAIEMAKRAGY 361

The following BLAST results are available for this feature:

BLAST of CX288586 vs. ExPASy Swiss-Prot

BLAST of CX288586 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
ENO_RHOOB	7.270e-25	43.31	Enolase OS=Rhodococcus opacus (strain B4) GN=eno P...	[more]
ENO_RHOBA	7.270e-25	45.31	Enolase OS=Rhodopirellula baltica GN=eno PE=3 SV=1	[more]
ENO_FINM2	7.270e-25	45.67	Enolase OS=Finegoldia magna (strain ATCC 29328) GN...	[more]
ENO_GEOSM	7.270e-25	40.94	Enolase OS=Geobacter sp. (strain M21) GN=eno PE=3 ...	[more]
ENO_GEOBB	7.270e-25	40.94	Enolase OS=Geobacter bemidjiensis (strain Bem / AT...	[more]
ENO_RHOSR	9.462e-25	43.31	Enolase OS=Rhodococcus sp. (strain RHA1) GN=eno PE...	[more]
ENO_MYCGI	9.462e-25	44.09	Enolase OS=Mycobacterium gilvum (strain PYR-GCK) G...	[more]
ENO_GEOSF	1.231e-24	40.94	Enolase OS=Geobacter sp. (strain FRC-32) GN=eno PE...	[more]
ENO_NOCFA	1.231e-24	42.52	Enolase OS=Nocardia farcinica GN=eno PE=3 SV=1	[more]
ENO_ALKOO	1.231e-24	41.41	Enolase OS=Alkaliphilus oremlandii (strain OhILAs)...	[more]

Pages

Properties


Property Name	Value
Genbank description	C02002A12SK IF1 Citrus clementina cDNA clone C02002A12, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX288586 ID=CX288586; Name=CX288586; organism=Citrus clementina; type=EST; length=527bp
GACTTGAATTGCTCAACACAGCCATTGCTAAAGCCGGTTACACAGGCAAA
GTTGTCATTGGAATGGATGTTGCTGCATCTGAATTCTATGGCTCAGATAA
GACTTATGATCTGAACTTCAAGGAAGAGAACAATGATGGTTCACAAAAGA
TCTCAGGAGATGCACTCAAAGATCTCTATAAGTCATTCATCTCTGATTAT
CCTATTGTATCAATTGAAGATCCATTTGACCAAGACGACTGGGAGCACTA
TGCCAAGCTAACCAGTGAGGTCGGAGAAAAAGTACAAATTGTTGGAGATG
ATCTTTTGGTCACCAATCCTAAGAGGGTTGAGAAGGCTATCAAAGAGAAG
ACCTGCAACGCCCTCCTTCTCAAGGTACTTCTTTAGTCCTTCTTTATTTG
GTCATTGGTTTACGACATTGTAAATGAAAATCTGTTCCTTCTCTCTGTTC
TGGTGGAAAGGTTAATCAAATTGGATCTGTAACTGAGAGCATTGAAGCCG
TCAGAATGTCCAAGCAAGCTGGGTGGG