CX288587

Overview
NameCX288587
Unique NameCX288587
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length414
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288587 vs. ExPASy Swiss-Prot
Match: TLCB_RICBR (ADP,ATP carrier protein 2 OS=Rickettsia bellii (strain RML369-C) GN=tlcB PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.331e-12
Identity = 36/110 (32.73%), Postives = 60/110 (54.55%), Query Frame = 2
Query:   56 MGTMESLKFLVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATGIATFTMMLLSQFIFDKFGWGVAAKITPTVLLLTGVGFFSLLLFGDPL 385
            +  +ES K +++SRY+  +  L+++Y +SI+L+E  W SK+K  +P   ++ S+ G     TG+ T     L   +    GW   A ITP ++   GV FFS  +F + L
Sbjct:  277 LSLIESTKIILTSRYLGFICILLISYSMSISLIEGLWMSKVKQLYPDTKDFISYHGKVFFWTGVLTLVSAFLGSNLIRLCGWFWGAIITPIMMFGAGVMFFSFTVFENHL 386          
BLAST of CX288587 vs. ExPASy Swiss-Prot
Match: TLC2_CHLPN (ADP,ATP carrier protein 2 OS=Chlamydia pneumoniae GN=tlcB PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.511e-11
Identity = 37/111 (33.33%), Postives = 63/111 (56.76%), Query Frame = 2
Query:   83 LVSSRYIRDLATLVVAYGISINLVEVTWKSKLKAQFPSPNEYSSFMGDFSTATG-IATFTMMLLSQFIFDKFGWGVAAKITPTVLLLTGVGFFSLL--------LFGDPLG 388
            L+ SRY+  LA +V++Y + I+L EV WK ++   + S  E++ +M   +T  G ++    +LL+     K+GW V A +TP V+L++G+ FF  +        +FG  LG
Sbjct:  289 LIQSRYLLGLAIIVLSYNLVIHLFEVVWKDQVSQIYSSHVEFNGYMSRITTLIGVVSVLAAVLLTGQCIRKWGWTVGALVTPLVMLVSGLLFFGTIFAAKRDISIFGGVLG 399          
The following BLAST results are available for this feature:
BLAST of CX288587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
TLCB_RICBR2.331e-1232.73ADP,ATP carrier protein 2 OS=Rickettsia bellii (st... [more]
TLC2_CHLPN1.511e-1133.33ADP,ATP carrier protein 2 OS=Chlamydia pneumoniae ... [more]

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Properties
Property NameValue
Genbank descriptionC02002B01SK IF1 Citrus clementina cDNA clone C02002B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288587 ID=CX288587; Name=CX288587; organism=Citrus clementina; type=EST; length=414bp
GAACAATAATGTTGAACTTCCTACCCGTAGTAAGAAGAAGAAGGAGAAGC
CAAAGATGGGAACAATGGAGAGCTTGAAATTCTTGGTGTCTTCAAGATAC
ATTAGGGATCTTGCTACTTTAGTGGTTGCATATGGTATCAGTATTAATCT
AGTTGAGGTTACATGGAAATCGAAGCTCAAGGCTCAGTTCCCAAGTCCGA
ATGAGTATTCTTCCTTTATGGGAGACTTCTCAACAGCTACTGGAATAGCA
ACATTCACGATGATGCTTCTAAGTCAATTTATATTTGATAAATTTGGATG
GGGAGTTGCTGCAAAGATCACACCCACAGTCCTCCTGCTTACAGGAGTTG
GTTTCTTTTCTCTACTATTATTTGGGGATCCTCTGGGACCTGCTCTTGCG
AAGTTCGGAATGAC
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