CX288594

Overview
NameCX288594
Unique NameCX288594
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length544
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP4FE_MOUSE (Leukotriene-B4 omega-hydroxylase 3 OS=Mus musculus GN=Cyp4f14 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.735e-19
Identity = 51/140 (36.43%), Postives = 77/140 (55.00%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVLQGRSAS---FEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQF 415
            L+W LY L++      + ++E+  +L+GR      ++D+  L FLT CI ES+RL+P   V+ R    D +LP    +  G   +IS++ IHH+  VW   E + P RFD   P   + ++   FIPFS GPR C+G  F
Sbjct:  337 LSWILYNLARHPEYQERCRQEVQELLRGREPEEIEWDDLAQLPFLTMCIKESLRLHPPVTVISRCCTQDILLPDGRTIPKGIICLISIFGIHHNPSVWPDPEVYDPFRFD---PENIKDSSPLAFIPFSAGPRNCIGQTF 473          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP4F2_HUMAN (Leukotriene-B(4) omega-hydroxylase 1 OS=Homo sapiens GN=CYP4F2 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.735e-19
Identity = 52/140 (37.14%), Postives = 75/140 (53.57%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVLQGRSAS---FEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQF 415
            L+W LY L+K      + ++E+  +L+ R      ++D+  L FLT C+ ES+RL+P  PV+ R    D VLP    +  G   +ISV+  HH+  VW   E + P RFD   P   +  +   FIPFS GPR C+G  F
Sbjct:  337 LSWVLYHLAKHPEYQERCRQEVQELLKDREPKEIEWDDLAHLPFLTMCMKESLRLHPPVPVISRHVTQDIVLPDGRVIPKGIICLISVFGTHHNPAVWPDPEVYDPFRFD---PENIKERSPLAFIPFSAGPRNCIGQTF 473          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP4F1_RAT (Cytochrome P450 4F1 OS=Rattus norvegicus GN=Cyp4f1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.266e-19
Identity = 51/140 (36.43%), Postives = 76/140 (54.29%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVLQGRSAS---FEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQF 415
            L+W LY L+ D     + ++E+  +L+ R      ++D+  L FLT CI ES+RL+P   V+ R    D +LP    +  G   +IS++ IHH+  VW   E + P RFD   P   + ++   FIPFS GPR C+G  F
Sbjct:  337 LSWILYNLANDPEYQERCRQEVQELLRDRDPEEIEWDDLAQLPFLTMCIKESLRLHPPVTVISRCCTQDILLPDGRTIPKGIICLISIFGIHHNPSVWPDPEVYNPFRFD---PENIKDSSPLAFIPFSAGPRNCIGQTF 473          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP4AA_MOUSE (Cytochrome P450 4A10 OS=Mus musculus GN=Cyp4a10 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.266e-19
Identity = 52/182 (28.57%), Postives = 89/182 (48.90%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVL-QGRSASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQFXXXXXXXXXXXXXQNMNFELVPD-QNINMTTG-ATIHTTNGLYM 541
            ++W  Y L+   +   + +EE+  +L  G S +++ +  + + T CI E++RLYP  P ++R        P    +  G  + +S+Y +HH+ +VW   E F P RF  + P  + +     F+PFSGG R C+G QF               + FEL+PD   + M      + + NG+Y+
Sbjct:  329 VSWIFYALATHPDHQQRCREEVQSLLGDGSSITWDHLDQIPYTTMCIKEALRLYPPVPGIVRELSTSVTFPDGRSLPKGVQVTLSIYGLHHNPKVWPNPEVFDPSRFAPDSPRHSHS-----FLPFSGGARNCIGKQFAMSELKVIVALTL--LRFELLPDPTRVPMPLARLVLKSKNGIYL 503          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP4AA_RAT (Cytochrome P450 4A10 OS=Rattus norvegicus GN=Cyp4a10 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 2.960e-19
Identity = 49/161 (30.43%), Postives = 79/161 (49.07%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVL-QGRSASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQFXXXXXXXXXXXXXQNMNFELVPD 484
            ++W  Y L+       + +EE+  VL  G S +++ +  + + T CI E++RLYP  P ++R        P    +  G  + +S+Y +HH+ +VW   E F P RF  + P  + +     F+PFSGG R C+G QF               + FEL+PD
Sbjct:  329 VSWIFYALATHPEHQQRCREEVQSVLGDGSSITWDHLDQIPYTTMCIKEALRLYPPVPGIVRELSTSVTFPDGRSLPKGIQVTLSIYGLHHNPKVWPNPEVFDPSRFAPDSPRHSHS-----FLPFSGGARNCIGKQFAMSEMKVIVALTL--LRFELLPD 482          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CYPE_BACSU (Probable bifunctional P-450/NADPH-P450 reductase 2 OS=Bacillus subtilis GN=cypE PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.865e-19
Identity = 49/139 (35.25%), Postives = 75/139 (53.96%), Query Frame = 2
Query:    2 VLTWTLYLLSKDCNSLMKAQEEIDRVLQGRSASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVW-ERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQF 415
            +L++ +Y L      L KAQEE DRVL   +  ++ I+ LK++   +NE++RLYP  P     A+ D VL G Y ++ GQ + + +  +H     W   AE+F PERF+    +P+       + PF  G R C+G QF
Sbjct:  275 LLSFAIYCLLTHPEKLKKAQEEADRVLTDDTPEYKQIQQLKYIRMVLNETLRLYPTAPAFSLYAKEDTVLGGEYPISKGQPVTVLIPKLHRDQNAWGPDAEDFRPERFEDPSSIPHHA-----YKPFGNGQRACIGMQF 408          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP4F8_HUMAN (Cytochrome P450 4F8 OS=Homo sapiens GN=CYP4F8 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.865e-19
Identity = 55/184 (29.89%), Postives = 90/184 (48.91%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVLQGRSAS---FEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQFXXXXXXXXXXXXXQNMNFELVPD-QNINMTTGATIHTTNGLYMK 544
            L+W LY L++      + ++E+  +L+ R      ++D+  L FLT C+ ES+RL+P  P   R    D VLP +  +  G    I+++ IHH+  VW   E + P RFD   P   +  +   FIPFS GPR C+G +F               + F ++PD +    T    +   +GL+++
Sbjct:  337 LSWVLYNLARHPEYQERCRQEVQELLKDREPKEIEWDDLAQLPFLTMCLKESLRLHPPIPTFARGCTQDVVLPDSRVIPKGNVCNINIFAIHHNPSVWPDPEVYDPFRFD---PENAQKRSPMAFIPFSAGPRNCIGQKFAMAEMKVVLALTL--LRFRILPDHREPRRTPEIVLRAEDGLWLR 515          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP4F3_HUMAN (Leukotriene-B(4) omega-hydroxylase 2 OS=Homo sapiens GN=CYP4F3 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 3.865e-19
Identity = 52/140 (37.14%), Postives = 74/140 (52.86%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVLQGRSAS---FEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQF 415
            L+W LY L+K      + ++E+  +L+ R      ++D+  L FLT CI ES+RL+P  P + R    D VLP    +  G   +ISV+  HH+  VW   E + P RFD   P   +  +   FIPFS GPR C+G  F
Sbjct:  337 LSWVLYHLAKHPEYQERCRQEVQELLKDREPKEIEWDDLAQLPFLTMCIKESLRLHPPVPAVSRCCTQDIVLPDGRVIPKGIICLISVFGTHHNPAVWPDPEVYDPFRFD---PKNIKERSPLAFIPFSAGPRNCIGQAF 473          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP4FC_HUMAN (Cytochrome P450 4F12 OS=Homo sapiens GN=CYP4F12 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.125e-18
Identity = 48/140 (34.29%), Postives = 74/140 (52.86%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVLQGRSAS---FEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQF 415
            L+W LY L++      + ++E+  +L+ R      ++D+  L FLT C+ ES+RL+P  P + R    D VLP    +  G   +I +  +HH+  VW   E + P RFD   P  ++  +   FIPFS GPR C+G  F
Sbjct:  337 LSWVLYNLARHPEYQERCRQEVQELLKDRDPKEIEWDDLAQLPFLTMCVKESLRLHPPAPFISRCCTQDIVLPDGRVIPKGITCLIDIIGVHHNPTVWPDPEVYDPFRFD---PENSKGRSPLAFIPFSAGPRNCIGQAF 473          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP4F4_RAT (Cytochrome P450 4F4 OS=Rattus norvegicus GN=Cyp4f4 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.469e-18
Identity = 50/140 (35.71%), Postives = 77/140 (55.00%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVLQGRSAS---FEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQF 415
            L+W LY L++      + ++E+  +L+ R ++   ++D+  L FLT CI ES+RL+P   V+ RR   D VLP    +  G   +I+++  HH+  VW   E + P RFD   P   +  +   FIPFS GPR C+G  F
Sbjct:  337 LSWILYNLARHPEYQERCRQEVRELLRDRESTEIEWDDLAQLPFLTMCIKESLRLHPPVTVISRRCTQDIVLPDGRVIPKGVICIINIFATHHNPTVWPDPEVYDPFRFD---PENIKDRSPLAFIPFSAGPRNCIGQTF 473          
The following BLAST results are available for this feature:
BLAST of CX288594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
CP4FE_MOUSE1.735e-1936.43Leukotriene-B4 omega-hydroxylase 3 OS=Mus musculus... [more]
CP4F2_HUMAN1.735e-1937.14Leukotriene-B(4) omega-hydroxylase 1 OS=Homo sapie... [more]
CP4F1_RAT2.266e-1936.43Cytochrome P450 4F1 OS=Rattus norvegicus GN=Cyp4f1... [more]
CP4AA_MOUSE2.266e-1928.57Cytochrome P450 4A10 OS=Mus musculus GN=Cyp4a10 PE... [more]
CP4AA_RAT2.960e-1930.43Cytochrome P450 4A10 OS=Rattus norvegicus GN=Cyp4a... [more]
CYPE_BACSU3.865e-1935.25Probable bifunctional P-450/NADPH-P450 reductase 2... [more]
CP4F8_HUMAN3.865e-1929.89Cytochrome P450 4F8 OS=Homo sapiens GN=CYP4F8 PE=1... [more]
CP4F3_HUMAN3.865e-1937.14Leukotriene-B(4) omega-hydroxylase 2 OS=Homo sapie... [more]
CP4FC_HUMAN1.125e-1834.29Cytochrome P450 4F12 OS=Homo sapiens GN=CYP4F12 PE... [more]
CP4F4_RAT1.469e-1835.71Cytochrome P450 4F4 OS=Rattus norvegicus GN=Cyp4f4... [more]

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Properties
Property NameValue
Genbank descriptionC02002B08SK IF1 Citrus clementina cDNA clone C02002B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288594 ID=CX288594; Name=CX288594; organism=Citrus clementina; type=EST; length=544bp
AGTTTTGACCTGGACACTATATCTTCTAAGCAAGGATTGTAACTCATTGA
TGAAAGCACAAGAAGAGATTGATAGAGTATTGCAGGGAAGATCTGCATCC
TTTGAAGACATAAAAGATCTGAAATTCCTAACACGTTGCATAAATGAGTC
AATGCGTCTCTACCCACATCCTCCTGTCTTGATAAGAAGAGCTCAAGTAG
ATGATGTGCTCCCTGGAAATTACAAGGTTAATGCTGGTCAAGATATAATG
ATTTCAGTTTACAATATCCACCATTCCTCACAGGTCTGGGAGAGAGCAGA
AGAGTTTTTACCAGAAAGGTTTGACTTGGAAGGCCCCATGCCCAATGAAA
CAAATACAGATTTTAGATTCATTCCTTTCAGCGGAGGGCCTCGGAAGTGT
GTTGGAGATCAGTTTGCTCTGCTAGAGGCTATTGTTGCTCTAGCAATACT
CTTGCAGAATATGAACTTTGAACTAGTTCCTGATCAGAATATCAACATGA
CTACTGGAGCAACCATACACACAACGAATGGTTTATACATGAAA
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