CX288594

Overview
NameCX288594
Unique NameCX288594
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length544
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP4A5_RABIT (Cytochrome P450 4A5 OS=Oryctolagus cuniculus GN=CYP4A5 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.918e-18
Identity = 54/183 (29.51%), Postives = 83/183 (45.36%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVL-QGRSASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQFXXXXXXXXXXXXXQNMNFELVPDQN--INMTTGATIHTTNGLYMK 544
            ++W  Y L+       + +EEI  +L  G S ++E +  + + T CI E+MRLYP  P + R        P    +  G  + +S+Y +HH+  VW   E F P RF      P        F+PFSGG R C+G QF               + FEL+PD       T    + + NG++++
Sbjct:  331 VSWIFYALATHPEHQHRCREEIQGLLGDGASITWEHLDQMPYTTMCIKEAMRLYPPVPAISRDLSSPVTFPDGRSLPKGFTVTLSIYGLHHNPNVWPNPEVFDPGRF-----TPGSARHSHAFLPFSGGARNCIGKQFAMNELKVAVALTL--VRFELLPDPTRIPKPTARLVLKSNNGIHLR 506          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP4CA_MOUSE (Cytochrome P450 4A12A OS=Mus musculus GN=Cyp4a12a PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.274e-18
Identity = 49/161 (30.43%), Postives = 76/161 (47.20%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVL-QGRSASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQFXXXXXXXXXXXXXQNMNFELVPD 484
            ++W  Y L+ +     + ++EI  +L  G S ++ D+  + + T CI E++R+YP  P + R        P    +  G  +M+S Y +HH+  VW   E F P RF      P  +     F+PFSGG R C+G QF               + FEL+PD
Sbjct:  328 ISWIFYALATNPEHQQRCRKEIQSLLGDGTSITWNDLDKMPYTTMCIKEALRIYPPVPSVSRELSSPVTFPDGRSLPKGIHVMLSFYGLHHNPTVWPNPEVFDPSRF-----APGSSRHSHSFLPFSGGARNCIGKQFAMNELKVAVALTL--LRFELLPD 481          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP4V3_MOUSE (Cytochrome P450 4V3 OS=Mus musculus GN=Cyp4v3 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.290e-18
Identity = 51/140 (36.43%), Postives = 77/140 (55.00%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVLQGRS---ASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQF 415
            + W+LYLL  +     K  +E+D V  GRS    + ED+K LK+L   I E++R++P  P L  R+  +D   G YKV  G + +I  Y +H   + +   EEF PERF    P  ++    + ++PFS GPR C+G +F
Sbjct:  338 INWSLYLLGTNPEVQRKVDQELDEVF-GRSHRPVTLEDLKKLKYLDCVIKETLRVFPSVP-LFARSLSEDCEVGGYKVTKGTEAIIIPYALHRDPRYFPDPEEFRPERF---FPENSQGRHPYAYVPFSAGPRNCIGQKF 472          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP4FB_HUMAN (Cytochrome P450 4F11 OS=Homo sapiens GN=CYP4F11 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 7.290e-18
Identity = 50/140 (35.71%), Postives = 75/140 (53.57%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVLQGRSA---SFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQF 415
            L+W LY L+K      + ++E+  +L+ R      ++D+  L FLT CI ES+RL+P  PV+ R    D VLP    +  G   +I++  IH++  VW   E + P RF+ E     +  +   FIPFS GPR C+G  F
Sbjct:  337 LSWVLYHLAKHPEYQEQCRQEVQELLKDREPIEIEWDDLAQLPFLTMCIKESLRLHPPVPVISRCCTQDFVLPDGRVIPKGIVCLINIIGIHYNPTVWPDPEVYDPFRFNQEN---IKERSPLAFIPFSAGPRNCIGQAF 473          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP4AM_HUMAN (Cytochrome P450 4A22 OS=Homo sapiens GN=CYP4A22 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.290e-18
Identity = 50/161 (31.06%), Postives = 76/161 (47.20%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVL-QGRSASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQFXXXXXXXXXXXXXQNMNFELVPD 484
            ++W LY L+       + +EEI  +L  G S ++  +  + + T CI E++RLYP  P + R        P    +  G  +++S+Y +HH+ +VW   E F P RF      P        F+PFSGG R C+G QF               + FEL+PD
Sbjct:  330 ISWILYALATHPKHQERCREEIHGLLGDGASITWNHLDQMPYTTMCIKEALRLYPPVPGIGRELSTPVTFPDGRSLPKGIMVLLSIYGLHHNPKVWPNLEVFDPSRF-----APGSAQHSHAFLPFSGGSRNCIGKQFAMNQLKVARALTL--LRFELLPD 483          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP4AB_HUMAN (Cytochrome P450 4A11 OS=Homo sapiens GN=CYP4A11 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.243e-17
Identity = 50/161 (31.06%), Postives = 76/161 (47.20%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVL-QGRSASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQFXXXXXXXXXXXXXQNMNFELVPD 484
            ++W LY L+       + +EEI  +L  G S ++  +  + + T CI E++RLYP  P + R        P    +  G  +++S+Y +HH+ +VW   E F P RF      P        F+PFSGG R C+G QF               + FEL+PD
Sbjct:  330 ISWILYALATHPKHQERCREEIHSLLGDGASITWNHLDQMPYTTMCIKEALRLYPPVPGIGRELSTPVTFPDGRSLPKGIMVLLSIYGLHHNPKVWPNPEVFDPFRF-----APGSAQHSHAFLPFSGGSRNCIGKQFAMNELKVATALTL--LRFELLPD 483          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP4X1_RAT (Cytochrome P450 4X1 OS=Rattus norvegicus GN=Cyp4x1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.624e-17
Identity = 45/138 (32.61%), Postives = 75/138 (54.35%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVL-QGRSASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQF 415
            ++W LY L+ +     + + EI  +L  G S ++E + ++ + T CI E++RL P  P + R       LP  + + AG  +++S++ +HH+  VW+  + F P RF  E    +E      F+PFS GPR C+G QF
Sbjct:  323 ISWLLYCLALNPEHQDRCRTEIRSILGDGSSITWEQLDEIPYTTMCIKETLRLIPPIPSISRELSKPLTLPDGHSLPAGMTVVLSIWGLHHNPAVWKDPKVFDPLRFTKEN---SEQRHPCAFLPFSSGPRNCIGQQF 457          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP341_MOUSE (Cytochrome P450 3A41 OS=Mus musculus GN=Cyp3a41a PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.624e-17
Identity = 54/158 (34.18%), Postives = 84/158 (53.16%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVLQGRSA-SFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTD-FRFIPFSGGPRKCVGDQFXXXXXXXXXXXXXQNMNFE 472
            L++TLY L+   +   K QEEID  L  ++  +++ + ++++L   +NE++RLYP    L R  + D  L G Y +  G  +MI  Y +HH  Q W   EEF PERF  E    N+ + D + ++PF  GPR C+G +F             QN +F+
Sbjct:  315 LSFTLYCLATHPDIQKKLQEEIDETLPNKAPPTYDTVMEMEYLDMVLNETLRLYPIGNRLERFCKKDVELNGVY-IPKGSTVMIPSYALHHDPQHWPEPEEFQPERFSKE----NKGSIDPYLYMPFGIGPRNCIGMRFAFMTMKLALTKVMQNFSFQ 467          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP4F3_RAT (Leukotriene-B(4) omega-hydroxylase 2 OS=Rattus norvegicus GN=Cyp4f3 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.121e-17
Identity = 48/140 (34.29%), Postives = 72/140 (51.43%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVLQGRSAS---FEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQF 415
            L+W LY L+K      + ++E+  +L+ R      ++D+  L FLT CI ES+RL+P    + R    D +LP    +  G    IS++  HH+  VW   E + P RFD +     +  +   FIPFS GPR C+G  F
Sbjct:  337 LSWILYNLAKHPEYQERCRQEVRELLRDREPEEIEWDDLAQLPFLTMCIKESLRLHPPATAISRCCTQDIMLPDGRVIPKGVICRISIFGTHHNPAVWPDPEVYNPFRFDADN---GKGRSPLAFIPFSAGPRNCIGQTF 473          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP4C1_BLADI (Cytochrome P450 4C1 OS=Blaberus discoidalis GN=CYP4C1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.121e-17
Identity = 48/139 (34.53%), Postives = 73/139 (52.52%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVLQG--RSASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQF 415
            + W L+LL        K  EE+D + QG  RS +  D+ D+K+L R I ES+RL+P  P  I R   +D   G+Y V AG  + + +Y++H +   +   E F P+ F    P        + ++PFS GPR C+G +F
Sbjct:  323 ICWALFLLGSHPEIQDKVYEELDHIFQGSDRSTTMRDLADMKYLERVIKESLRLFPSVP-FIGRVLKEDTKIGDYLVPAGCMMNLQIYHVHRNQDQYPNPEAFNPDNF---LPERVAKRHPYAYVPFSAGPRNCIGQKF 457          
The following BLAST results are available for this feature:
BLAST of CX288594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
CP4A5_RABIT1.918e-1829.51Cytochrome P450 4A5 OS=Oryctolagus cuniculus GN=CY... [more]
CP4CA_MOUSE4.274e-1830.43Cytochrome P450 4A12A OS=Mus musculus GN=Cyp4a12a ... [more]
CP4V3_MOUSE7.290e-1836.43Cytochrome P450 4V3 OS=Mus musculus GN=Cyp4v3 PE=1... [more]
CP4FB_HUMAN7.290e-1835.71Cytochrome P450 4F11 OS=Homo sapiens GN=CYP4F11 PE... [more]
CP4AM_HUMAN7.290e-1831.06Cytochrome P450 4A22 OS=Homo sapiens GN=CYP4A22 PE... [more]
CP4AB_HUMAN1.243e-1731.06Cytochrome P450 4A11 OS=Homo sapiens GN=CYP4A11 PE... [more]
CP4X1_RAT1.624e-1732.61Cytochrome P450 4X1 OS=Rattus norvegicus GN=Cyp4x1... [more]
CP341_MOUSE1.624e-1734.18Cytochrome P450 3A41 OS=Mus musculus GN=Cyp3a41a P... [more]
CP4F3_RAT2.121e-1734.29Leukotriene-B(4) omega-hydroxylase 2 OS=Rattus nor... [more]
CP4C1_BLADI2.121e-1734.53Cytochrome P450 4C1 OS=Blaberus discoidalis GN=CYP... [more]

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Properties
Property NameValue
Genbank descriptionC02002B08SK IF1 Citrus clementina cDNA clone C02002B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288594 ID=CX288594; Name=CX288594; organism=Citrus clementina; type=EST; length=544bp
AGTTTTGACCTGGACACTATATCTTCTAAGCAAGGATTGTAACTCATTGA
TGAAAGCACAAGAAGAGATTGATAGAGTATTGCAGGGAAGATCTGCATCC
TTTGAAGACATAAAAGATCTGAAATTCCTAACACGTTGCATAAATGAGTC
AATGCGTCTCTACCCACATCCTCCTGTCTTGATAAGAAGAGCTCAAGTAG
ATGATGTGCTCCCTGGAAATTACAAGGTTAATGCTGGTCAAGATATAATG
ATTTCAGTTTACAATATCCACCATTCCTCACAGGTCTGGGAGAGAGCAGA
AGAGTTTTTACCAGAAAGGTTTGACTTGGAAGGCCCCATGCCCAATGAAA
CAAATACAGATTTTAGATTCATTCCTTTCAGCGGAGGGCCTCGGAAGTGT
GTTGGAGATCAGTTTGCTCTGCTAGAGGCTATTGTTGCTCTAGCAATACT
CTTGCAGAATATGAACTTTGAACTAGTTCCTGATCAGAATATCAACATGA
CTACTGGAGCAACCATACACACAACGAATGGTTTATACATGAAA
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