CX288594

Overview
NameCX288594
Unique NameCX288594
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length544
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP4A6_RABIT (Cytochrome P450 4A6 OS=Oryctolagus cuniculus GN=CYP4A6 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.770e-17
Identity = 52/183 (28.42%), Postives = 86/183 (46.99%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVL-QGRSASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQFXXXXXXXXXXXXXQNMNFELVPDQN--INMTTGATIHTTNGLYMK 544
            ++W  Y L+       + +EEI  +L  G S ++E +  + + T CI E++RLYP  P + R+       P    +  G  + +S+Y +HH+ +VW   E F P  F      P        F+PFSGGPR C+G QF               + FEL+PD     +      + ++NG++++
Sbjct:  330 ISWIFYALATHPEHQHRCREEIQGLLGDGASITWEHLDQMPYTTMCIKEALRLYPPVPGVGRQLSSPVTFPDGRSLPKGVIVTLSIYALHHNPKVWPNPEVFDPFPF-----APGSARHSHAFLPFSGGPRNCIGKQFAMNELKVAVALTL--VRFELLPDPKRVPDQKPRLVLKSSNGIHLR 505          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP4V3_RAT (Cytochrome P450 4V3 OS=Rattus norvegicus GN=Cyp4v3 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.725e-17
Identity = 49/140 (35.00%), Postives = 77/140 (55.00%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVLQGRS---ASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQF 415
            + W+LYLL  +     K  +E+D V  GRS    + ED+K LK+L   I E++R++P  P+  R    D  + G YK++ G + +I  Y +H   + +   EEF PERF    P  ++    + ++PFS GPR C+G +F
Sbjct:  338 INWSLYLLGSNPEVQRKVDKELDDVF-GRSHRPVTLEDLKKLKYLDCVIKETLRVFPSVPLFARSLSEDCEVAG-YKISKGTEAVIIPYALHRDPRYFPDPEEFQPERF---FPENSQGRHPYAYVPFSAGPRNCIGQKF 472          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP4AC_RAT (Cytochrome P450 4A12 OS=Rattus norvegicus GN=Cyp4a12 PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 4.725e-17
Identity = 48/161 (29.81%), Postives = 75/161 (46.58%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVL-QGRSASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQFXXXXXXXXXXXXXQNMNFELVPD 484
            ++W  Y L+ +       ++EI  +L  G S +++D+  + + T CI E++R+YP    + R        P    +  G  +M+S Y +HH+  VW   E F P RF      P  +     F+PFSGG R C+G QF               + FEL+PD
Sbjct:  328 ISWIFYALATNPEHQQGCRKEIQSLLGDGASITWDDLDKMPYTTMCIKEALRIYPPVTAVSRMLSTPVTFPDGRSLPKGITVMLSFYGLHHNPTVWPNPEVFDPYRF-----APESSRHSHSFLPFSGGARNCIGKQFAMNELKVAVALTL--LRFELLPD 481          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP4A4_RABIT (Cytochrome P450 4A4 OS=Oryctolagus cuniculus GN=CYP4A4 PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 4.725e-17
Identity = 49/161 (30.43%), Postives = 78/161 (48.45%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVL-QGRSASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQFXXXXXXXXXXXXXQNMNFELVPD 484
            ++W  Y L+       + +EEI  +L  G S ++E +  + + T CI E++RLYP  P + R+       P    +  G  + +S+Y +H++ +VW+  E F P RF      P+       F+PFSGG R C+G QF               + FEL+PD
Sbjct:  330 VSWIFYALATHPEHQHRCREEIQGLLGDGASITWEHLDQMPYTTMCIKEALRLYPPVPSVTRQLSKPVTFPDGRSLPKGVILFLSIYGLHYNPKVWQNPEVFDPFRF-----APDSAYHSHAFLPFSGGARNCIGKQFAMRELKVAVALTL--VRFELLPD 483          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CYPD_BACSU (Probable bifunctional P-450/NADPH-P450 reductase 1 OS=Bacillus subtilis GN=cypD PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.171e-17
Identity = 44/139 (31.65%), Postives = 74/139 (53.24%), Query Frame = 2
Query:    2 VLTWTLYLLSKDCNSLMKAQEEIDRVLQGRSASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWER-AEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQF 415
            +L++  Y L K  + L KA EE+DRVL   + +++ + +L ++   +NES+RL+P  P      + D V+ G + +     I + +  +H     W + AEEF PERF+ +  +P+       + PF  G R C+G QF
Sbjct:  275 LLSFATYFLLKHPDKLKKAYEEVDRVLTDAAPTYKQVLELTYIRMILNESLRLWPTAPAFSLYPKEDTVIGGKFPITTNDRISVLIPQLHRDRDAWGKDAEEFRPERFEHQDQVPHHA-----YKPFGNGQRACIGMQF 408          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP3AB_MOUSE (Cytochrome P450 3A11 OS=Mus musculus GN=Cyp3a11 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.171e-17
Identity = 52/158 (32.91%), Postives = 84/158 (53.16%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVLQGRSA-SFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTD-FRFIPFSGGPRKCVGDQFXXXXXXXXXXXXXQNMNFE 472
            L++TL+ L+   +   K Q+EID  L  ++  +++ + ++++L   +NE++RLYP    L R  + D  L G Y +  G  +MI  Y +HH  Q W   EEF PERF  E    N+ + D + ++PF  GPR C+G +F             QN +F+
Sbjct:  315 LSFTLHSLATHPDIQKKLQDEIDEALPNKAPPTYDTVMEMEYLDMVLNETLRLYPIANRLERVCKKDVELNGVY-IPKGSTVMIPSYALHHDPQHWSEPEEFQPERFSKE----NKGSIDPYVYLPFGNGPRNCLGMRFALMNMKLALTKIMQNFSFQ 467          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP4F3_MOUSE (Leukotriene-B(4) omega-hydroxylase 2 OS=Mus musculus GN=Cyp4f3 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.060e-17
Identity = 48/140 (34.29%), Postives = 72/140 (51.43%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVLQGRSAS---FEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQF 415
            L+W LY L++      + ++E+  +L+ R      ++D+  L FLT CI ES+RL+P    + R    D VLP    +  G    IS++  HH+  VW   E + P RFD +     +  +   FIPFS GPR C+G  F
Sbjct:  337 LSWILYNLARHPEYQERCRQEVRELLRDREPEEIEWDDLAQLPFLTMCIKESLRLHPPVTAISRCCTQDIVLPDGRVIPKGVISRISIFGTHHNPAVWPDPEVYDPFRFDADNV---KGRSPLAFIPFSAGPRNCIGQTF 473          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP4A7_RABIT (Cytochrome P450 4A7 OS=Oryctolagus cuniculus GN=CYP4A7 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 8.060e-17
Identity = 50/161 (31.06%), Postives = 75/161 (46.58%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVL-QGRSASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQFXXXXXXXXXXXXXQNMNFELVPD 484
            ++W  Y L+       + +EEI  +L  G S ++E +  + + T CI E++RLYP  P +  +       P    +  G  I +S+Y +HH+ +VW   E F P RF      P        F+PFSGG R C+G QF               + FEL+PD
Sbjct:  331 ISWIFYALATHPEHQHRCREEIQGLLGDGASITWEHLDKMPYTTMCIKEALRLYPPVPGVGSKLSSPVTFPDGRSLPKGIIITLSIYGLHHNPKVWPNPEVFDPSRF-----APGSARHSHAFLPFSGGSRNCIGKQFAMNELKVAVALTL--VRFELLPD 484          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP4V2_HUMAN (Cytochrome P450 4V2 OS=Homo sapiens GN=CYP4V2 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.053e-16
Identity = 48/139 (34.53%), Postives = 73/139 (52.52%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVL--QGRSASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQF 415
            + W+LYLL  +     K   E+D V     R A+ ED+K L++L   I E++RL+P  P+  R    D  + G Y+V  G + +I  Y +H   + +   EEF PERF    P   +    + ++PFS GPR C+G +F
Sbjct:  338 INWSLYLLGSNPEVQKKVDHELDDVFGKSDRPATVEDLKKLRYLECVIKETLRLFPSVPLFARSVSEDCEVAG-YRVLKGTEAVIIPYALHRDPRYFPNPEEFQPERF---FPENAQGRHPYAYVPFSAGPRNCIGQKF 472          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP3AG_MOUSE (Cytochrome P450 3A16 OS=Mus musculus GN=Cyp3a16 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.053e-16
Identity = 51/159 (32.08%), Postives = 84/159 (52.83%), Query Frame = 2
Query:    2 VLTWTLYLLSKDCNSLMKAQEEIDRVLQGRSA-SFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTD-FRFIPFSGGPRKCVGDQFXXXXXXXXXXXXXQNMNFE 472
            +L++T+Y L+   +   K QEEID  L  ++  +++ +  +++L   +NE++RLYP    L R  + D  + G Y +  G  ++I  Y +HH  Q W   EEF PERF  E    N+ + D + ++PF  GPR C+G +F             QN +F+
Sbjct:  314 ILSFTVYSLATHPDIQKKLQEEIDEALPNKAPPTYDTVMAMEYLDMVLNETLRLYPITNRLQRVCKKDVEINGIY-IPKGSTVIIPSYVLHHDPQHWPEPEEFQPERFSKE----NKGSIDPYVYLPFGNGPRNCIGMRFALMNMKLALIKVLQNFSFQ 467          
The following BLAST results are available for this feature:
BLAST of CX288594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
CP4A6_RABIT2.770e-1728.42Cytochrome P450 4A6 OS=Oryctolagus cuniculus GN=CY... [more]
CP4V3_RAT4.725e-1735.00Cytochrome P450 4V3 OS=Rattus norvegicus GN=Cyp4v3... [more]
CP4AC_RAT4.725e-1729.81Cytochrome P450 4A12 OS=Rattus norvegicus GN=Cyp4a... [more]
CP4A4_RABIT4.725e-1730.43Cytochrome P450 4A4 OS=Oryctolagus cuniculus GN=CY... [more]
CYPD_BACSU6.171e-1731.65Probable bifunctional P-450/NADPH-P450 reductase 1... [more]
CP3AB_MOUSE6.171e-1732.91Cytochrome P450 3A11 OS=Mus musculus GN=Cyp3a11 PE... [more]
CP4F3_MOUSE8.060e-1734.29Leukotriene-B(4) omega-hydroxylase 2 OS=Mus muscul... [more]
CP4A7_RABIT8.060e-1731.06Cytochrome P450 4A7 OS=Oryctolagus cuniculus GN=CY... [more]
CP4V2_HUMAN1.053e-1634.53Cytochrome P450 4V2 OS=Homo sapiens GN=CYP4V2 PE=1... [more]
CP3AG_MOUSE1.053e-1632.08Cytochrome P450 3A16 OS=Mus musculus GN=Cyp3a16 PE... [more]

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Properties
Property NameValue
Genbank descriptionC02002B08SK IF1 Citrus clementina cDNA clone C02002B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288594 ID=CX288594; Name=CX288594; organism=Citrus clementina; type=EST; length=544bp
AGTTTTGACCTGGACACTATATCTTCTAAGCAAGGATTGTAACTCATTGA
TGAAAGCACAAGAAGAGATTGATAGAGTATTGCAGGGAAGATCTGCATCC
TTTGAAGACATAAAAGATCTGAAATTCCTAACACGTTGCATAAATGAGTC
AATGCGTCTCTACCCACATCCTCCTGTCTTGATAAGAAGAGCTCAAGTAG
ATGATGTGCTCCCTGGAAATTACAAGGTTAATGCTGGTCAAGATATAATG
ATTTCAGTTTACAATATCCACCATTCCTCACAGGTCTGGGAGAGAGCAGA
AGAGTTTTTACCAGAAAGGTTTGACTTGGAAGGCCCCATGCCCAATGAAA
CAAATACAGATTTTAGATTCATTCCTTTCAGCGGAGGGCCTCGGAAGTGT
GTTGGAGATCAGTTTGCTCTGCTAGAGGCTATTGTTGCTCTAGCAATACT
CTTGCAGAATATGAACTTTGAACTAGTTCCTGATCAGAATATCAACATGA
CTACTGGAGCAACCATACACACAACGAATGGTTTATACATGAAA
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