CX288594

Overview
NameCX288594
Unique NameCX288594
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length544
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP132_MYCTU (Putative cytochrome P450 132 OS=Mycobacterium tuberculosis GN=cyp132 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.520e-15
Identity = 46/179 (25.70%), Postives = 86/179 (48.04%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVLQGRSASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQFXXXXXXXXXXXXXQNMNFELVPDQNINMTTGATIHTTNGLYM 541
            ++W  YL++ +  +      E+D VL  R  + +D+  L + T C+ ES R +    ++ R A  DD++ G +++  G  ++I +++IHH  + W   + F P RF L  P          ++PF GG R C+G  F             Q+  F+L P  ++ +    T+   +G+++
Sbjct:  283 MSWFWYLMALNPQARDHMLTELDDVLGMRRPTADDLGKLAWTTACLQESQRYFSSVWIIAREAVDDDIIDG-HRIRRGTTVVIPIHHIHHDPRWWPDPDRFDPGRF-LRCPTDRPR---CAYLPFGGGRRICIGQSFALMEMVLMAAIMSQHFTFDLAPGYHVELEATLTLRPKHGVHV 456          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP132_MYCBO (Putative cytochrome P450 132 OS=Mycobacterium bovis GN=cyp132 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.520e-15
Identity = 46/179 (25.70%), Postives = 86/179 (48.04%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVLQGRSASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQFXXXXXXXXXXXXXQNMNFELVPDQNINMTTGATIHTTNGLYM 541
            ++W  YL++ +  +      E+D VL  R  + +D+  L + T C+ ES R +    ++ R A  DD++ G +++  G  ++I +++IHH  + W   + F P RF L  P          ++PF GG R C+G  F             Q+  F+L P  ++ +    T+   +G+++
Sbjct:  283 MSWFWYLMALNPQARDHMLTELDDVLGMRRPTADDLGKLAWTTACLQESQRYFSSVWIIAREAVDDDIIDG-HRIRRGTTVVIPIHHIHHDPRWWPDPDRFDPGRF-LRCPTDRPR---CAYLPFGGGRRICIGQSFALMEMVLMAAIMSQHFTFDLAPGYHVELEATLTLRPKHGVHV 456          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP4B1_RABIT (Cytochrome P450 4B1 OS=Oryctolagus cuniculus GN=CYP4B1 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.985e-15
Identity = 45/138 (32.61%), Postives = 69/138 (50.00%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVLQGR-SASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQF 415
            ++W LY ++       + +EE+  +L  + S  +ED+  + +LT C+ E  RLYP  P + R+            + AG  I + +Y +H +S VW   E F P RF    P  +     + FIPFS GPR C+G QF
Sbjct:  319 ISWFLYCMALYPEHQQRCREEVREILGDQDSFQWEDLAKMTYLTMCMKECFRLYPPVPQVYRQLSKPVSFVDGRSLPAGSLISLHIYALHRNSDVWPDPEVFDPLRF---SPENSSGRHPYAFIPFSAGPRNCIGQQF 453          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: C6A18_DROME (Probable cytochrome P450 6a18 OS=Drosophila melanogaster GN=Cyp6a18 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.985e-15
Identity = 51/139 (36.69%), Postives = 75/139 (53.96%), Query Frame = 2
Query:   11 WTLYLLSKDCNSLMKAQEEIDRVLQGRSASF--EDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYK--VNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQF 415
            + LY L+K+ +   K + E+ +VL+     F  E IKDLK+L + INE++R Y   P + R A    V+PGN K  + AGQ ++I    IHH   ++    EF PERF    P  +       ++PF  GPR C+G +F
Sbjct:  321 FALYELAKNPSIQDKVRAELGQVLEQHDQKFTYECIKDLKYLDQVINETLRHYTIVPNVDRVAAKRFVVPGNPKFVIEAGQSVIIPSSAIHHDPSIYPEPNEFRPERF---SPEESAKRPSVAWLPFGEGPRNCIGLRF 456          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP3AL_CALJA (Cytochrome P450 3A21 OS=Callithrix jacchus GN=CYP3A21 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.593e-15
Identity = 53/184 (28.80%), Postives = 92/184 (50.00%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVLQGRS-ASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTD-FRFIPFSGGPRKCVGDQFXXXXXXXXXXXXXQNMNFELVPDQNI--NMTTGATIHTTNGLYMK 544
            L++ +Y L+   +   K QEEID VL  ++ A+++ +  +++L   +NE++RL+P    L R  + D  + G + +  G  +MI  Y +H+  + W   E+FLPERF       N+ N D + + PF  GPR C+G +F             QN +F+   +  I   +  G  + T   + +K
Sbjct:  314 LSFIMYELATHPDVQQKLQEEIDAVLPNKAPATYDTVLQMEYLDMVVNETLRLFPLAMRLERVCKKDVEINGVF-IPKGVVVMIPSYALHYDPKYWTEPEKFLPERFSKN----NKDNIDPYIYTPFGTGPRNCIGMRFALMNMKLALIRVLQNFSFKPCKETQIPLKLRLGGLLQTEKPIVLK 492          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP17A_FELCA (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Felis catus GN=CYP17A1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.593e-15
Identity = 48/162 (29.63%), Postives = 78/162 (48.15%), Query Frame = 2
Query:    2 VLTWTLYLLSKDCNSLMKAQEEIDRVLQ-GRSASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQFXXXXXXXXXXXXXQNMNFELVPD 484
            V+ WT+  L        K QEEID+ +   R+ +  D   L  L   I E +R+ P  P LI    + D   G + V+ G +++I+++ +HH+ + W R ++F+PERF L+       +    ++PF  GPR C+G+               Q  + E VPD
Sbjct:  310 VVRWTVAFLLHHPQLYKKLQEEIDQNIGFSRTPTMSDRNQLILLEATIREVLRIRPVAPTLIPHKAIMDSSIGEFAVDKGTNVIINLWALHHNEKEWYRPDQFMPERF-LDPTRSQLISPSLSYLPFGAGPRSCLGESLARQEVFLFMAWLLQRFDLE-VPD 469          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP4B1_MOUSE (Cytochrome P450 4B1 OS=Mus musculus GN=Cyp4b1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.386e-15
Identity = 45/138 (32.61%), Postives = 68/138 (49.28%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVLQGR-SASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQF 415
            ++W LY ++       + +EE+  +L  R S  ++D+  + +LT C+ E  RLYP  P + R+            + AG  I + +Y +H +S VW   E F P RF  E          F F+PFS GPR C+G QF
Sbjct:  324 ISWFLYCMALYPMHQQRCREEVREILGDRDSFQWDDLAQMTYLTMCMKECFRLYPPVPQVYRQLSKPVTFVDGRSLPAGSLISLHIYALHRNSAVWPDPEVFDPLRFSPENMTGRH---PFAFMPFSAGPRNCIGQQF 458          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP3AI_RAT (Cytochrome P450 3A18 OS=Rattus norvegicus GN=Cyp3a18 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.386e-15
Identity = 48/158 (30.38%), Postives = 83/158 (52.53%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVLQGRS-ASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTD-FRFIPFSGGPRKCVGDQFXXXXXXXXXXXXXQNMNFE 472
            +++ +Y L+   N   K Q EIDR L  ++  +++ + ++++L   +NES+RLYP    L R ++ D  + G + +  G  + I +Y +H + + W   EEF PERF  E    N+ + D + ++PF  GPR C+G +F             QN N +
Sbjct:  314 ISFIMYELATRPNVQKKLQNEIDRALPNKAPVTYDALMEMEYLDMVVNESLRLYPIATRLDRVSKKDVEINGVF-IPKGTVVTIPIYPLHRNPEYWLEPEEFNPERFSKE----NKGSIDPYVYLPFGNGPRNCIGMRFALISMKLAVIGVLQNFNIQ 466          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP3A9_RAT (Cytochrome P450 3A9 OS=Rattus norvegicus GN=Cyp3a9 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 3.386e-15
Identity = 48/158 (30.38%), Postives = 82/158 (51.90%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVLQGRS-ASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTD-FRFIPFSGGPRKCVGDQFXXXXXXXXXXXXXQNMNFE 472
            L++ LYLL+   +   K Q+EID  L  ++ A+++ +  +++L   +NE++RLYP    L R  + D  + G + +  G  +MI  + +H     W   EEF PERF  +    N+ N + + ++PF  GPR C+G +F             QN +F+
Sbjct:  314 LSFVLYLLAIHPDIQKKLQDEIDAALPNKAHATYDTLLQMEYLDMVVNETLRLYPIAGRLERVCKTDVEINGVF-IPKGTVVMIPTFALHKDPHYWPEPEEFRPERFSKK----NQDNINPYMYLPFGNGPRNCIGMRFALMNMKVALFRVLQNFSFQ 466          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP4X1_HUMAN (Cytochrome P450 4X1 OS=Homo sapiens GN=CYP4X1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.423e-15
Identity = 46/182 (25.27%), Postives = 87/182 (47.80%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVL-QGRSASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQFXXXXXXXXXXXXXQNMNFELVPDQNINMT--TGATIHTTNGLYM 541
            ++W LY L+ +     + +EE+  +L  G S +++ + ++ + T CI E+ RL P  P + R        P    + AG  +++S++ +HH+  VW+  + F P RF  E    ++    + ++PFS G R C+G +F               ++F + PD    +T      +   NG+Y+
Sbjct:  325 ISWILYCLALNPEHQERCREEVRGILGDGSSITWDQLGEMSYTTMCIKETCRLIPAVPSISRDLSKPLTFPDGCTLPAGITVVLSIWGLHHNPAVWKNPKVFDPLRFSQEN---SDQRHPYAYLPFSAGSRNCIGQEFAMIELKVTIALIL--LHFRVTPDPTRPLTFPNHFILKPKNGMYL 501          
The following BLAST results are available for this feature:
BLAST of CX288594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
CP132_MYCTU1.520e-1525.70Putative cytochrome P450 132 OS=Mycobacterium tube... [more]
CP132_MYCBO1.520e-1525.70Putative cytochrome P450 132 OS=Mycobacterium bovi... [more]
CP4B1_RABIT1.985e-1532.61Cytochrome P450 4B1 OS=Oryctolagus cuniculus GN=CY... [more]
C6A18_DROME1.985e-1536.69Probable cytochrome P450 6a18 OS=Drosophila melano... [more]
CP3AL_CALJA2.593e-1528.80Cytochrome P450 3A21 OS=Callithrix jacchus GN=CYP3... [more]
CP17A_FELCA2.593e-1529.63Steroid 17-alpha-hydroxylase/17,20 lyase OS=Felis ... [more]
CP4B1_MOUSE3.386e-1532.61Cytochrome P450 4B1 OS=Mus musculus GN=Cyp4b1 PE=1... [more]
CP3AI_RAT3.386e-1530.38Cytochrome P450 3A18 OS=Rattus norvegicus GN=Cyp3a... [more]
CP3A9_RAT3.386e-1530.38Cytochrome P450 3A9 OS=Rattus norvegicus GN=Cyp3a9... [more]
CP4X1_HUMAN4.423e-1525.27Cytochrome P450 4X1 OS=Homo sapiens GN=CYP4X1 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionC02002B08SK IF1 Citrus clementina cDNA clone C02002B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288594 ID=CX288594; Name=CX288594; organism=Citrus clementina; type=EST; length=544bp
AGTTTTGACCTGGACACTATATCTTCTAAGCAAGGATTGTAACTCATTGA
TGAAAGCACAAGAAGAGATTGATAGAGTATTGCAGGGAAGATCTGCATCC
TTTGAAGACATAAAAGATCTGAAATTCCTAACACGTTGCATAAATGAGTC
AATGCGTCTCTACCCACATCCTCCTGTCTTGATAAGAAGAGCTCAAGTAG
ATGATGTGCTCCCTGGAAATTACAAGGTTAATGCTGGTCAAGATATAATG
ATTTCAGTTTACAATATCCACCATTCCTCACAGGTCTGGGAGAGAGCAGA
AGAGTTTTTACCAGAAAGGTTTGACTTGGAAGGCCCCATGCCCAATGAAA
CAAATACAGATTTTAGATTCATTCCTTTCAGCGGAGGGCCTCGGAAGTGT
GTTGGAGATCAGTTTGCTCTGCTAGAGGCTATTGTTGCTCTAGCAATACT
CTTGCAGAATATGAACTTTGAACTAGTTCCTGATCAGAATATCAACATGA
CTACTGGAGCAACCATACACACAACGAATGGTTTATACATGAAA
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