CX288594

Overview
NameCX288594
Unique NameCX288594
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length544
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP4E1_DROME (Probable cytochrome P450 4e1 OS=Drosophila melanogaster GN=Cyp4e1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.423e-15
Identity = 56/179 (31.28%), Postives = 90/179 (50.28%), Query Frame = 2
Query:   11 WTLYLLSKDCNSLMKAQEEIDRVLQ----GRSASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQFXXXXXXXXXXXXXQNMNFELVPDQNINMTTGATIHTTNGL 535
            + +YLLS+  +   K   E   V+     GR A+F++I  +K L   I E+ RLYP  P + R  + D V+ G+  V  G  + + +  + ++ +V++   +F PERFD E P P      F ++PFS GPR C+G +F             +  NFE++P  +  ++    I TT GL
Sbjct:  318 FAVYLLSRHPDEQEKLFNEQCDVMGASGLGRDATFQEISTMKHLDLFIKEAQRLYPSVPFIGRFTEKDYVIDGDI-VPKGTTLNLGLLMLGYNDRVFKDPHKFQPERFDREKPGP------FEYVPFSAGPRNCIGQKFALLEIKTVVSKIIR--NFEVLPALDELVSKDGYISTTLGL 487          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP4C3_DROME (Cytochrome P450 4c3 OS=Drosophila melanogaster GN=Cyp4c3 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.776e-15
Identity = 45/140 (32.14%), Postives = 76/140 (54.29%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVL---QGRSASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQF 415
            ++WTL+LL        +  EE+D +    +   A+ +++ D+++L  CI +S+RL+P  P++ R    +DV  G   V AG   +I  Y +H + +V+ + E+F P+ F  E          F +IPFS GPR C+G +F
Sbjct:  351 ISWTLFLLGCHPEYQERVVEELDSIFGDDKETPATMKNLMDMRYLECCIKDSLRLFPSVPMMARMVG-EDVNIGGKIVPAGTQAIIMTYALHRNPRVFPKPEQFNPDNFLPENCAGRH---PFAYIPFSAGPRNCIGQKF 486          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP4B1_RAT (Cytochrome P450 4B1 OS=Rattus norvegicus GN=Cyp4b1 PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 5.776e-15
Identity = 49/180 (27.22%), Postives = 78/180 (43.33%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVLQGR-SASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQFXXXXXXXXXXXXXQNMNFELVPDQNINMTTGATIHTTNGLYM 541
            ++W LY ++         +EE+  +L  + S  ++D+  + +LT C+ E  RLYP  P + R+            + AG  I + +Y +H +S VW   E F P RF  E          F F+PFS GPR C+G QF                 F L P +         + + NG+++
Sbjct:  324 ISWFLYCMALYPEHQQLCREEVRGILGDQDSFQWDDLAKMTYLTMCMKECFRLYPPVPQVYRQLNKPVTFVDGRSLPAGSLISLHIYALHRNSTVWPDPEVFDPLRFSPENAAGRH---PFAFMPFSAGPRNCIGQQFAMNEMKVVTALCLLRFEFSLDPSKMPIKVPQLILRSKNGIHL 500          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP3A6_RABIT (Cytochrome P450 3A6 OS=Oryctolagus cuniculus GN=CYP3A6 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 5.776e-15
Identity = 49/170 (28.82%), Postives = 87/170 (51.18%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVLQGRS-ASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTD-FRFIPFSGGPRKCVGDQFXXXXXXXXXXXXXQNMNFELVPDQNINMTTG 508
            L++ ++LL+   +   K QEEID +L  +  A+++ +  +++L   +NE++RLYP    L R  + D  + G + +  G  +M+  Y +H   Q W   +EF PERF  +    N+ N + + + PF  GPR C+G +F             QN +F+L  +  + +  G
Sbjct:  312 LSFIMHLLATHPDVQQKLQEEIDTLLPNKELATYDTLVKMEYLDMVVNETLRLYPIAGRLERVCKKDVDINGTF-IPKGTIVMMPTYALHRDPQHWTEPDEFRPERFSKK----NKDNINPYIYHPFGAGPRNCLGMRFALMNIKLALVRLMQNFSFKLCKETQVPLKLG 476          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP3A5_HUMAN (Cytochrome P450 3A5 OS=Homo sapiens GN=CYP3A5 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.776e-15
Identity = 47/158 (29.75%), Postives = 82/158 (51.90%), Query Frame = 2
Query:    2 VLTWTLYLLSKDCNSLMKAQEEIDRVLQGRSA-SFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQFXXXXXXXXXXXXXQNMNFE 472
            VL++TLY L+   +   K Q+EID VL  ++  +++ +  +++L   +NE++RL+P    L R  + D  + G + +  G  ++I  Y +HH  + W   EEF PERF  +     ++   + + PF  GPR C+G +F             QN +F+
Sbjct:  313 VLSFTLYELATHPDVQQKLQKEIDAVLPNKAPPTYDAVVQMEYLDMVVNETLRLFPVAIRLERTCKKDVEINGVF-IPKGSMVVIPTYALHHDPKYWTEPEEFRPERFSKK----KDSIDPYIYTPFGTGPRNCIGMRFALMNMKLALIRVLQNFSFK 465          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP3A4_HUMAN (Cytochrome P450 3A4 OS=Homo sapiens GN=CYP3A4 PE=1 SV=4)

HSP 1 Score: 80.4925 bits (197), Expect = 5.776e-15
Identity = 49/159 (30.82%), Postives = 83/159 (52.20%), Query Frame = 2
Query:    2 VLTWTLYLLSKDCNSLMKAQEEIDRVLQGRSA-SFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTD-FRFIPFSGGPRKCVGDQFXXXXXXXXXXXXXQNMNFE 472
            VL++ +Y L+   +   K QEEID VL  ++  +++ +  +++L   +NE++RL+P    L R  + D  + G + +  G  +MI  Y +H   + W   E+FLPERF  +    N+ N D + + PF  GPR C+G +F             QN +F+
Sbjct:  313 VLSFIMYELATHPDVQQKLQEEIDAVLPNKAPPTYDTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEINGMF-IPKGVVVMIPSYALHRDPKYWTEPEKFLPERFSKK----NKDNIDPYIYTPFGSGPRNCIGMRFALMNMKLALIRVLQNFSFK 466          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: C4AA1_DROME (Probable cytochrome P450 4aa1 OS=Drosophila melanogaster GN=Cyp4aa1 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 5.776e-15
Identity = 49/185 (26.49%), Postives = 95/185 (51.35%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVLQ--GRSASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQFXXXXXXXXXXXXXQNMNFELVP---DQNINMTTGATIHTTNGLYMK 544
            + +TL+LL+++     +   E+  + +   R+ +  D+ +++++  CI E++RLYP  P LI R   ++V    + + AG ++ I  Y  H  + ++   E+F PERF    P  +E    + F+PFS GPR C+G++F             +  +++L+P      I  T   T+  + GL+++
Sbjct:  321 VAFTLFLLTQNPECQDRCVLELATIFEDSNRAPTMTDLHEMRYMEMCIKEALRLYPSVP-LIARKLGEEVRLAKHTLPAGSNVFICPYATHRLAHIYPDPEKFQPERF---SPENSENRHPYAFLPFSAGPRYCIGNRFAIMEIKTIVSRLLR--SYQLLPVTGKTTIAATFRITLRASGGLWVR 499          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CPXN_ANASP (Probable cytochrome P450 110 OS=Anabaena sp. (strain PCC 7120) GN=cyp110 PE=3 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 7.544e-15
Identity = 46/165 (27.88%), Postives = 76/165 (46.06%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVLQGRSASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQFXXXXXXXXXXXXXQNMNFELVPDQNINM 499
            + W  Y + K+ N   K Q+E+DR+  G + +  +I  L +LT    E++R+YP  P L  R     +    Y++     +M S+Y IH+   ++   ++F PERF      P+E      +IPF GG R+C+G                 N    L  D+ +N+
Sbjct:  270 IAWAFYQILKNVNVQEKLQQELDRL--GANPNPMEIAQLPYLTAVSQETLRMYPVLPTLFPRITKSSINIAGYQLEPDTTLMASIYLIHYREDLYPNPQQFRPERFIERQYSPSE------YIPFGGGSRRCLGYALALLEIKLVIATVLSNYQLALAEDKPVNV 426          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP17A_HORSE (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Equus caballus GN=CYP17A1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.544e-15
Identity = 49/162 (30.25%), Postives = 78/162 (48.15%), Query Frame = 2
Query:    2 VLTWTLYLLSKDCNSLMKAQEEIDR-VLQGRSASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQFXXXXXXXXXXXXXQNMNFELVPD 484
            V+ W +  L  D     K QEEID+ V   R+ +  D   L  L   I E +R+ P  P+LI    + D   G + V+ G +++I+++ +HH+ + W + + F+PERF L+       +    ++PF  GPR C+G+               Q  N E VPD
Sbjct:  310 VVKWIVAFLLHDPQLKKKIQEEIDQNVGFSRTPTLSDRNRLLLLEATIREVLRIRPVAPMLIPHKALVDSSIGEFAVDDGTNVIINLWALHHNEKEWHQPDRFMPERF-LDPTGSQLISPSLSYLPFGAGPRSCIGELLARQELFLFTAWLLQRFNLE-VPD 469          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP4B1_HUMAN (Cytochrome P450 4B1 OS=Homo sapiens GN=CYP4B1 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 9.853e-15
Identity = 49/180 (27.22%), Postives = 77/180 (42.78%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVLQGRSA-SFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQFXXXXXXXXXXXXXQNMNFELVPDQNINMTTGATIHTTNGLYM 541
            ++W LY ++       + +EE+  +L  +    ++D+  + +LT CI ES RLYP  P + R+            + AG  I + +Y +H +S VW   E F   RF  E          F F+PFS GPR C+G QF                 F L P +         + + NG ++
Sbjct:  324 ISWFLYCMALYPEHQHRCREEVREILGDQDFFQWDDLGKMTYLTMCIKESFRLYPPVPQVYRQLSKPVTFVDGRSLPAGSLISMHIYALHRNSAVWPDPEVFDSLRFSTENASKRH---PFAFMPFSAGPRNCIGQQFAMSEMKVVTAMCLLRFEFSLDPSRLPIKMPQLVLRSKNGFHL 500          
The following BLAST results are available for this feature:
BLAST of CX288594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
CP4E1_DROME4.423e-1531.28Probable cytochrome P450 4e1 OS=Drosophila melanog... [more]
CP4C3_DROME5.776e-1532.14Cytochrome P450 4c3 OS=Drosophila melanogaster GN=... [more]
CP4B1_RAT5.776e-1527.22Cytochrome P450 4B1 OS=Rattus norvegicus GN=Cyp4b1... [more]
CP3A6_RABIT5.776e-1528.82Cytochrome P450 3A6 OS=Oryctolagus cuniculus GN=CY... [more]
CP3A5_HUMAN5.776e-1529.75Cytochrome P450 3A5 OS=Homo sapiens GN=CYP3A5 PE=1... [more]
CP3A4_HUMAN5.776e-1530.82Cytochrome P450 3A4 OS=Homo sapiens GN=CYP3A4 PE=1... [more]
C4AA1_DROME5.776e-1526.49Probable cytochrome P450 4aa1 OS=Drosophila melano... [more]
CPXN_ANASP7.544e-1527.88Probable cytochrome P450 110 OS=Anabaena sp. (stra... [more]
CP17A_HORSE7.544e-1530.25Steroid 17-alpha-hydroxylase/17,20 lyase OS=Equus ... [more]
CP4B1_HUMAN9.853e-1527.22Cytochrome P450 4B1 OS=Homo sapiens GN=CYP4B1 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionC02002B08SK IF1 Citrus clementina cDNA clone C02002B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288594 ID=CX288594; Name=CX288594; organism=Citrus clementina; type=EST; length=544bp
AGTTTTGACCTGGACACTATATCTTCTAAGCAAGGATTGTAACTCATTGA
TGAAAGCACAAGAAGAGATTGATAGAGTATTGCAGGGAAGATCTGCATCC
TTTGAAGACATAAAAGATCTGAAATTCCTAACACGTTGCATAAATGAGTC
AATGCGTCTCTACCCACATCCTCCTGTCTTGATAAGAAGAGCTCAAGTAG
ATGATGTGCTCCCTGGAAATTACAAGGTTAATGCTGGTCAAGATATAATG
ATTTCAGTTTACAATATCCACCATTCCTCACAGGTCTGGGAGAGAGCAGA
AGAGTTTTTACCAGAAAGGTTTGACTTGGAAGGCCCCATGCCCAATGAAA
CAAATACAGATTTTAGATTCATTCCTTTCAGCGGAGGGCCTCGGAAGTGT
GTTGGAGATCAGTTTGCTCTGCTAGAGGCTATTGTTGCTCTAGCAATACT
CTTGCAGAATATGAACTTTGAACTAGTTCCTGATCAGAATATCAACATGA
CTACTGGAGCAACCATACACACAACGAATGGTTTATACATGAAA
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