CX288594

Overview
NameCX288594
Unique NameCX288594
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length544
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP17A_BOVIN (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Bos taurus GN=CYP17A1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.853e-15
Identity = 45/170 (26.47%), Postives = 79/170 (46.47%), Query Frame = 2
Query:    2 VLTWTLYLLSKDCNSLMKAQEEIDRVLQ-GRSASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQFXXXXXXXXXXXXXQNMNFELVPDQNINMTTG 508
            V+ W +  L    +   + Q++ID+++   R+ +  D   L  L   I E +R+ P  P LI    V D   G+  ++ G D++++++ +HHS + W+  + F+PERF L+       +    ++PF  GPR CVG+               Q  N E+  D  +    G
Sbjct:  310 VIKWIVAYLLHHPSLKKRIQDDIDQIIGFNRTPTISDRNRLVLLEATIREVLRIRPVAPTLIPHKAVIDSSIGDLTIDKGTDVVVNLWALHHSEKEWQHPDLFMPERF-LDPTGTQLISPSLSYLPFGAGPRSCVGEMLARQELFLFMSRLLQRFNLEIPDDGKLPSLEG 478          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP17A_BISBI (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Bison bison GN=CYP17A1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.853e-15
Identity = 45/170 (26.47%), Postives = 79/170 (46.47%), Query Frame = 2
Query:    2 VLTWTLYLLSKDCNSLMKAQEEIDRVLQ-GRSASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQFXXXXXXXXXXXXXQNMNFELVPDQNINMTTG 508
            V+ W +  L    +   + Q++ID+++   R+ +  D   L  L   I E +R+ P  P LI    V D   G+  ++ G D++++++ +HHS + W+  + F+PERF L+       +    ++PF  GPR CVG+               Q  N E+  D  +    G
Sbjct:  310 VIKWIVAYLLHHPSLKKRIQDDIDQIIGFNRTPAISDRNRLVLLEATIREVLRIRPVAPTLIPHKAVIDSSIGDLTIDKGTDVVVNLWALHHSEKEWQHPDLFMPERF-LDPTGTQLISPSLSYLPFGAGPRSCVGEMLARQELFLFMSRLLQRFNLEIPDDGKLPSLEG 478          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: C12E1_DROME (Probable cytochrome P450 12e1, mitochondrial OS=Drosophila melanogaster GN=Cyp12e1 PE=2 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 9.853e-15
Identity = 49/136 (36.03%), Postives = 75/136 (55.15%), Query Frame = 2
Query:   17 LYLLSKDCNSLMKAQEEIDRVLQGRSASF--EDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISV-YNIHHSSQVWERAEEFLPERF---DLEGPMPNETNTDFRFIPFSGGPRKCVG 406
            L+ LSK  +   +  EEI  +L  + +S   E++++L +L  CI E +R+YP  P  +RR   D VL G Y+V AG D+ I+  Y + +  Q   +  EF+PER+   +    +  ET T F ++PF  GPR C G
Sbjct:  328 LFSLSKSPDKQARLLEEIRGILPNKDSSLTIENMRNLPYLRACIKEGIRMYPIGPGTLRRMPHDVVLSG-YRVVAGTDVGIAANYQMANMEQFVPKVREFIPERWLRDESNSHLVGETATPFMYLPFGFGPRSCAG 462          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: C71BB_ARATH (Cytochrome P450 71B11 OS=Arabidopsis thaliana GN=CYP71B11 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.287e-14
Identity = 46/139 (33.09%), Postives = 73/139 (52.52%), Query Frame = 2
Query:    2 VLTWTLYLLSKDCNSLMKAQEEIDRVLQGRSASFE-DIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETN---TDFRFIPFSGGPRKCVG 406
            V+TW +  L  +   + KAQ E+  V++ +    E DI+ L++L   + E+ R+ P  P+LI R    DV  G Y +     I ++++ IH +  VW+  E F+PERF     M N+ +    +F F+PF  G R C G
Sbjct:  305 VMTWVMTYLISNPRVMKKAQAEVREVIKNKDDIIEEDIERLEYLKMVVKETFRVLPLVPLLIPREASKDVKIGGYDIPKKTWIHVNIWAIHRNPNVWKDPEAFIPERF-----MDNQIDYKGLNFEFLPFGSGRRMCPG 438          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP17A_CAVPO (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Cavia porcellus GN=CYP17A1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.681e-14
Identity = 43/137 (31.39%), Postives = 71/137 (51.82%), Query Frame = 2
Query:    2 VLTWTLYLLSKDCNSLMKAQEEIDR-VLQGRSASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGD 409
            V+ W +  L  +     K QEEID  V   R+ +F D   L  L   I E +R+ P  P+LI      D   G + ++   +++++++ +HH+ Q W+R ++F+PERF L+            ++PF  GPR CVG+
Sbjct:  310 VVLWVIAFLLHNPQVKKKIQEEIDHNVGFSRTPTFSDRNHLLMLEATIREVLRIRPVAPILIPHKANTDSSIGEFAIDKDTNVLVNLWALHHNEQEWDRPDQFMPERF-LDPTGSQIIVPSSSYLPFGAGPRSCVGE 445          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: C6A19_DROME (Probable cytochrome P450 6a19 OS=Drosophila melanogaster GN=Cyp6a19 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.681e-14
Identity = 53/166 (31.93%), Postives = 79/166 (47.59%), Query Frame = 2
Query:   11 WTLYLLSKDCNSLMKAQEEIDRVLQGRSASFE--DIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPG-NYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQFXXXXXXXXXXXXXQNMNFELVPDQNINM 499
            +TLY L+ + +   K + EID VL+  +   E   ++DL ++ + INES+R +P    L R A          Y + AG  +++S   IHH  + +   E+F+PERFD E      T     F+PF  GPR C+G +F              N  FEL P   + M
Sbjct:  316 FTLYELACNQDVQDKLRAEIDSVLERYNGKLEYDSMQDLFYMEKVINESLRKHPVVAHLARIATKPYQHSNPKYFIEAGTGVLVSTLGIHHDPEFYPEPEKFIPERFDEEQVKKRPT---CAFLPFGAGPRNCIGLRFGRMQVIIGLALLIHNFRFELHPKTPVPM 478          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: CP3AD_MOUSE (Cytochrome P450 3A13 OS=Mus musculus GN=Cyp3a13 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.195e-14
Identity = 43/138 (31.16%), Postives = 76/138 (55.07%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVLQGRS-ASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQF 415
            L++ LYLL+   +   K Q+EID  L  ++ A+++ +  +++L   +NE++RLYP    L R  + D  + G + +  G  +MI  + +H   + W   EEF PERF  +     ++   + ++PF  GPR C+G +F
Sbjct:  314 LSFALYLLAIHPDVQKKLQDEIDAALPNKAPATYDTLLQMEYLDMVVNETLRLYPIAGRLERVCKTDVEINGLF-IPKGTVVMIPTFALHKDPKYWPEPEEFRPERFSKKN---QDSINPYMYLPFGSGPRNCIGMRF 447          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: C83A1_ARATH (Cytochrome P450 83A1 OS=Arabidopsis thaliana GN=CYP83A1 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 2.195e-14
Identity = 52/186 (27.96%), Postives = 89/186 (47.85%), Query Frame = 2
Query:    5 LTWTLYLLSKDCNSLMKAQEEIDRVLQGRSASF---EDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVW-ERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQFXXXXXXXXXXXXXQNMNFEL-----VPDQNINMTTGATIHTTNGL 535
            + W +  L K    L KAQ E+   ++ + ++F   +D+K+L +    + E++R+ P  P+LI RA + D     Y + AG  + ++ + +    + W    +EF PERF LE  + +   TD+ FIPF  G R C G +               + NF+L       D N+++ TG  +H +  L
Sbjct:  309 VVWGMTYLMKYPQVLKKAQAEVREYMKEKGSTFVTEDDVKNLPYFRALVKETLRIEPVIPLLIPRACIQDTKIAGYDIPAGTTVNVNAWAVSRDEKEWGPNPDEFRPERF-LEKEV-DFKGTDYEFIPFGSGRRMCPGMRLGAAMLEVPYANLLLSFNFKLPNGMKPDDINMDVMTGLAMHKSQHL 492          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: C7D95_MENSP (Cytochrome P450 71D95 OS=Mentha spicata GN=CYP71D95 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.195e-14
Identity = 45/136 (33.09%), Postives = 76/136 (55.88%), Query Frame = 2
Query:   11 WTLYLLSKDCNSLMKAQEEIDRVLQGR-SASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQF 415
            W +  L ++   + KAQ E+   L+G+ S   +D+++LK++   + E+MR++P  P++ R  + +  + G YK+     IMI+V+++  +   WE+ E F PERFD      +   +DF FIPF  G R C G  F
Sbjct:  309 WVMAELMRNPAVMAKAQAEVRAALKGKTSVDVDDVQELKYMKSVVKETMRMHPPIPLIPRSCREECEVNG-YKIPNKARIMINVWSMGRNPLYWEKPETFWPERFDQVS--RDFMGSDFEFIPFGAGRRICPGLNF 441          
BLAST of CX288594 vs. ExPASy Swiss-Prot
Match: C7D95_MENGR (Cytochrome P450 71D95 OS=Mentha gracilis GN=CYP71D95 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.195e-14
Identity = 45/136 (33.09%), Postives = 76/136 (55.88%), Query Frame = 2
Query:   11 WTLYLLSKDCNSLMKAQEEIDRVLQGR-SASFEDIKDLKFLTRCINESMRLYPHPPVLIRRAQVDDVLPGNYKVNAGQDIMISVYNIHHSSQVWERAEEFLPERFDLEGPMPNETNTDFRFIPFSGGPRKCVGDQF 415
            W +  L ++   + KAQ E+   L+G+ S   +D+++LK++   + E+MR++P  P++ R  + +  + G YK+     IMI+V+++  +   WE+ E F PERFD      +   +DF FIPF  G R C G  F
Sbjct:  309 WVMAELMRNPAVMAKAQAEVRAALKGKTSVDVDDVQELKYMKSVVKETMRMHPPIPLIPRSCREECEVNG-YKIPNKARIMINVWSMGRNPLYWEKPETFWPERFDQVS--RDFMGSDFEFIPFGAGRRICPGLNF 441          
The following BLAST results are available for this feature:
BLAST of CX288594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 275
Match NameE-valueIdentityDescription
CP17A_BOVIN9.853e-1526.47Steroid 17-alpha-hydroxylase/17,20 lyase OS=Bos ta... [more]
CP17A_BISBI9.853e-1526.47Steroid 17-alpha-hydroxylase/17,20 lyase OS=Bison ... [more]
C12E1_DROME9.853e-1536.03Probable cytochrome P450 12e1, mitochondrial OS=Dr... [more]
C71BB_ARATH1.287e-1433.09Cytochrome P450 71B11 OS=Arabidopsis thaliana GN=C... [more]
CP17A_CAVPO1.681e-1431.39Steroid 17-alpha-hydroxylase/17,20 lyase OS=Cavia ... [more]
C6A19_DROME1.681e-1431.93Probable cytochrome P450 6a19 OS=Drosophila melano... [more]
CP3AD_MOUSE2.195e-1431.16Cytochrome P450 3A13 OS=Mus musculus GN=Cyp3a13 PE... [more]
C83A1_ARATH2.195e-1427.96Cytochrome P450 83A1 OS=Arabidopsis thaliana GN=CY... [more]
C7D95_MENSP2.195e-1433.09Cytochrome P450 71D95 OS=Mentha spicata GN=CYP71D9... [more]
C7D95_MENGR2.195e-1433.09Cytochrome P450 71D95 OS=Mentha gracilis GN=CYP71D... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02002B08SK IF1 Citrus clementina cDNA clone C02002B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288594 ID=CX288594; Name=CX288594; organism=Citrus clementina; type=EST; length=544bp
AGTTTTGACCTGGACACTATATCTTCTAAGCAAGGATTGTAACTCATTGA
TGAAAGCACAAGAAGAGATTGATAGAGTATTGCAGGGAAGATCTGCATCC
TTTGAAGACATAAAAGATCTGAAATTCCTAACACGTTGCATAAATGAGTC
AATGCGTCTCTACCCACATCCTCCTGTCTTGATAAGAAGAGCTCAAGTAG
ATGATGTGCTCCCTGGAAATTACAAGGTTAATGCTGGTCAAGATATAATG
ATTTCAGTTTACAATATCCACCATTCCTCACAGGTCTGGGAGAGAGCAGA
AGAGTTTTTACCAGAAAGGTTTGACTTGGAAGGCCCCATGCCCAATGAAA
CAAATACAGATTTTAGATTCATTCCTTTCAGCGGAGGGCCTCGGAAGTGT
GTTGGAGATCAGTTTGCTCTGCTAGAGGCTATTGTTGCTCTAGCAATACT
CTTGCAGAATATGAACTTTGAACTAGTTCCTGATCAGAATATCAACATGA
CTACTGGAGCAACCATACACACAACGAATGGTTTATACATGAAA
back to top