CX288599

Overview
NameCX288599
Unique NameCX288599
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length620
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX288599_ssr1 microsatellite CX288599_ssr1:1..16. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig136 contig Ccv1_Contig136:1..620. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288599 vs. ExPASy Swiss-Prot
Match: SODC_PANTR (Superoxide dismutase [Cu-Zn] OS=Pan troglodytes GN=SOD1 PE=2 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 3.164e-37
Identity = 77/149 (51.68%), Postives = 94/149 (63.09%), Query Frame = 2
Query:   95 KAVAVLGGTEGVKGTVSFSQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 538
            KAV VL G   V+G ++F Q E +GP  V GS+ GL  G HGFHVH  GD T GC S GPHFNP  ++HG P+DE RH              A  ++ D+ I LSG + IIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:    4 KAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of CX288599 vs. ExPASy Swiss-Prot
Match: SODC_HUMAN (Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 3.164e-37
Identity = 77/149 (51.68%), Postives = 94/149 (63.09%), Query Frame = 2
Query:   95 KAVAVLGGTEGVKGTVSFSQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 538
            KAV VL G   V+G ++F Q E +GP  V GS+ GL  G HGFHVH  GD T GC S GPHFNP  ++HG P+DE RH              A  ++ D+ I LSG + IIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:    4 KAVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 152          
BLAST of CX288599 vs. ExPASy Swiss-Prot
Match: SODC_ASPFU (Superoxide dismutase [Cu-Zn] OS=Aspergillus fumigatus GN=sodC PE=2 SV=3)

HSP 1 Score: 154.451 bits (389), Expect = 4.133e-37
Identity = 80/152 (52.63%), Postives = 94/152 (61.84%), Query Frame = 2
Query:   89 MVKAVAVLGGTEGVKGTVSFSQ-EGDGPTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 538
            MVKAVAVL G   + GTV+F Q + + PTTVS ++ G  P    GFHVH  GD TNGC S GPHFNP GK HG PED  RH              A  +  D  I L G  S++GR +VVHA  DDLG+GG+E SK TGNAG R ACG+IG+
Sbjct:    1 MVKAVAVLRGDSKITGTVTFEQADENSPTTVSWNIKGNDPNAKRGFHVHQFGDNTNGCTSAGPHFNPYGKTHGAPEDSERHVGDLGNFETDAEGNAVGSKQDKLIKLIGAESVLGRTLVVHAGTDDLGRGGNEESKKTGNAGARPACGVIGI 152          
BLAST of CX288599 vs. ExPASy Swiss-Prot
Match: SODC_RABIT (Superoxide dismutase [Cu-Zn] OS=Oryctolagus cuniculus GN=SOD1 PE=1 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 7.049e-37
Identity = 74/148 (50.00%), Postives = 90/148 (60.81%), Query Frame = 2
Query:   95 KAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 538
            KAV VL G   V+ T+ F Q+G GP  V G ++GL  G H FHVH  GD   GC S GPHFNP  K+HG P+DE RH              A   + D+ I LSG  S+IGR +VVH   DDLGKGG++ S  TGNAG R+ACG+IG+
Sbjct:    4 KAVCVLKGDGPVEATIHFEQKGTGPVVVKGRITGLTEGLHEFHVHQFGDNRQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTAGSNGVADVLIEDSVISLSGDMSVIGRTLVVHEKEDDLGKGGNDESTKTGNAGSRLACGVIGI 151          
BLAST of CX288599 vs. ExPASy Swiss-Prot
Match: SODC_CORMI (Superoxide dismutase [Cu-Zn] OS=Cordyceps militaris GN=SOD1 PE=2 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 7.049e-37
Identity = 78/152 (51.32%), Postives = 94/152 (61.84%), Query Frame = 2
Query:   89 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 538
            MVKAV VL G   V GTV+F QE +  PTT++  ++G  P    GFH+H  GD TNGC S GPHFNP GK HG P D  RH              A  +V D+ + L GP+S++GR VVVH   DDLGKGG+E S  TGNAG R ACG+IG+
Sbjct:    1 MVKAVCVLRGDAKVAGTVTFEQESESAPTTITWDITGNDPNAERGFHIHTFGDNTNGCTSAGPHFNPHGKTHGAPTDAARHVGDLGNIKTDGQGNAKGSVQDSHVKLIGPHSVVGRTVVVHGGTDDLGKGGNEESLKTGNAGPRPACGVIGV 152          
BLAST of CX288599 vs. ExPASy Swiss-Prot
Match: SODC_PONPY (Superoxide dismutase [Cu-Zn] OS=Pongo pygmaeus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 1.202e-36
Identity = 78/150 (52.00%), Postives = 95/150 (63.33%), Query Frame = 2
Query:   95 KAVAVLGGTEG-VKGTVSFSQ-EGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 538
            KAV VL G    VKG ++F Q E +GP  V GS+ GL  G HGFHVH  GD T GC S GPHFNP  ++HG P+DE RH              A+ ++ D+ I LSG + IIGR +VVH   DDLGKGG+E S  TGNAG R+ACG+IG+
Sbjct:    4 KAVCVLKGDNSPVKGIINFEQKERNGPVKVWGSIEGLTEGLHGFHVHEFGDNTVGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVASVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGI 153          
BLAST of CX288599 vs. ExPASy Swiss-Prot
Match: SODC1_DEBHA (Superoxide dismutase [Cu-Zn] 1 OS=Debaryomyces hansenii GN=SOD1 PE=1 SV=4)

HSP 1 Score: 152.14 bits (383), Expect = 2.051e-36
Identity = 80/152 (52.63%), Postives = 92/152 (60.53%), Query Frame = 2
Query:   89 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 538
            M KAVAVL G   V G V+F Q  +  PTT++  +SG       GFHVH  GD TNGC S GPHFNP  KEHG PED+NRH              A  +  D  + L G NSI+GR VV+HA  DDLGKGG+  SK TGNAG R ACG+IGL
Sbjct:    1 MAKAVAVLRGDSKVSGVVNFEQSSESDPTTITWEISGNDANALRGFHVHTFGDNTNGCTSAGPHFNPFTKEHGAPEDDNRHVGDLGNVTTDTSGVAKGSKQDLFVKLIGQNSILGRTVVIHAGTDDLGKGGNAESKKTGNAGARPACGVIGL 152          
BLAST of CX288599 vs. ExPASy Swiss-Prot
Match: SODC_CLAPU (Superoxide dismutase [Cu-Zn] OS=Claviceps purpurea GN=SOD1 PE=3 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 2.679e-36
Identity = 79/152 (51.97%), Postives = 93/152 (61.18%), Query Frame = 2
Query:   89 MVKAVAVLGGTEGVKGTVSFSQEGDG-PTTVSGSLSGLKPGP-HGFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 538
            MVKAVAVL G   V GTV F QE +  PTT++  ++G       GFH+H  GD TNGC S GPHFNP GK HG P DE RH              A  +V D  + L GP+S+IGR VV+HA  DDLGKG +E S  TGNAG R ACG+IG+
Sbjct:    1 MVKAVAVLRGDAKVGGTVVFEQESESAPTTITWDITGNDANAKRGFHIHTFGDNTNGCTSAGPHFNPHGKTHGAPTDEARHVGDLGNLETDGQGNAKGSVKDEHVKLIGPHSVIGRTVVIHAGTDDLGKGDNEESLKTGNAGPRPACGVIGI 152          
BLAST of CX288599 vs. ExPASy Swiss-Prot
Match: SODC_ASPOR (Superoxide dismutase [Cu-Zn] OS=Aspergillus oryzae GN=sodC PE=3 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 2.679e-36
Identity = 78/152 (51.32%), Postives = 93/152 (61.18%), Query Frame = 2
Query:   89 MVKAVAVLGGTEGVKGTVSFSQ-EGDGPTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 538
            MVKAVAVL G   + GTV+F Q + + PTTVS +++G        FHVH  GD TNGC S GPHFNP GKEHG PEDENRH              A  +  D  I L G  S++GR +V+HA  DDLG+  H  SK TGNAG R ACG+IG+
Sbjct:    1 MVKAVAVLRGDSKISGTVTFEQADANAPTTVSWNITGHDANAERAFHVHQFGDNTNGCTSAGPHFNPFGKEHGAPEDENRHVGDLGNFKTDAEGNAVGSKQDKLIKLIGAESVLGRTLVIHAGTDDLGRSEHPESKKTGNAGARPACGVIGI 152          
BLAST of CX288599 vs. ExPASy Swiss-Prot
Match: SODC_YARLI (Superoxide dismutase [Cu-Zn] OS=Yarrowia lipolytica GN=SOD1 PE=3 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 3.499e-36
Identity = 79/152 (51.97%), Postives = 91/152 (59.87%), Query Frame = 2
Query:   89 MVKAVAVLGGTEGVKGTVSFSQEGD-GPTTVSGSLSGLKPGPH-GFHVHALGDTTNGCMSTGPHFNPAGKEHGPPEDENRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGL 538
            MVKAVAVL G   V GTV+F Q+ + GP TV+  + G  P    GFHVH  GD TNGC S GPHFNP  K HG P D  RH              A   + D+ + L+G NSI+GR VV+H   DDLGKGGH  S  TGNAG R ACG+IGL
Sbjct:    1 MVKAVAVLRGDSKVSGTVTFEQDSESGPVTVTYDIKGNDPNAERGFHVHEFGDNTNGCTSAGPHFNPFKKNHGGPTDSERHVGDLGNVKTDSEGVAKGVLKDSLLKLTGDNSIVGRTVVIHGGEDDLGKGGHADSLKTGNAGPRPACGVIGL 152          
The following BLAST results are available for this feature:
BLAST of CX288599 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
SODC_PANTR3.164e-3751.68Superoxide dismutase [Cu-Zn] OS=Pan troglodytes GN... [more]
SODC_HUMAN3.164e-3751.68Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SO... [more]
SODC_ASPFU4.133e-3752.63Superoxide dismutase [Cu-Zn] OS=Aspergillus fumiga... [more]
SODC_RABIT7.049e-3750.00Superoxide dismutase [Cu-Zn] OS=Oryctolagus cunicu... [more]
SODC_CORMI7.049e-3751.32Superoxide dismutase [Cu-Zn] OS=Cordyceps militari... [more]
SODC_PONPY1.202e-3652.00Superoxide dismutase [Cu-Zn] OS=Pongo pygmaeus GN=... [more]
SODC1_DEBHA2.051e-3652.63Superoxide dismutase [Cu-Zn] 1 OS=Debaryomyces han... [more]
SODC_CLAPU2.679e-3651.97Superoxide dismutase [Cu-Zn] OS=Claviceps purpurea... [more]
SODC_ASPOR2.679e-3651.32Superoxide dismutase [Cu-Zn] OS=Aspergillus oryzae... [more]
SODC_YARLI3.499e-3651.97Superoxide dismutase [Cu-Zn] OS=Yarrowia lipolytic... [more]

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Properties
Property NameValue
Genbank descriptionC02002C02SK IF1 Citrus clementina cDNA clone C02002C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288599 ID=CX288599; Name=CX288599; organism=Citrus clementina; type=EST; length=620bp
TCTCTCTCTCTCTCTCACTCCCTCTTTCTCTCTACAAGCCCTCTTCATTT
TCCTCCCTCCAAGGGGTGTTCTGAGATCACACAGCACAATGGTGAAAGCA
GTTGCAGTTCTTGGTGGAACTGAGGGTGTCAAGGGAACTGTTTCCTTTTC
CCAGGAAGGAGATGGTCCAACAACTGTATCAGGAAGCCTCTCTGGTCTCA
AGCCTGGTCCTCATGGATTCCATGTTCATGCTCTTGGAGACACAACAAAT
GGTTGCATGTCTACCGGACCCCACTTTAACCCTGCTGGAAAAGAACATGG
ACCTCCAGAGGATGAGAATCGTCATGCTGGTGACTTAGGAAATGTCAATG
TTGGTGATGATGGTACTGCTACTTTTACAGTTGTTGACAATCAGATTCCT
CTTTCTGGACCAAATTCCATTATTGGAAGGGCTGTTGTAGTCCACGCAGA
TCCCGATGATCTTGGCAAGGGCGGTCATGAGCTGAGCAAAACCACTGGAA
ATGCTGGTGGCAGAGTAGCTTGCGGCATCATTGGCCTCCAAGGATGAAGC
CGCATCTCATCGGACAATAATAAATTCATTTGATATGATGTTTTGAGTGC
ATTATAGTCCATATATGCTT
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