CX288613

Overview
NameCX288613
Unique NameCX288613
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length485
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig137 contig Ccv1_Contig137:1..485. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288613 vs. ExPASy Swiss-Prot
Match: NACB_ASPOR (Nascent polypeptide-associated complex subunit beta OS=Aspergillus oryzae GN=egd1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.903e-27
Identity = 63/130 (48.46%), Postives = 92/130 (70.77%), Query Frame = 3
Query:   99 KMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDV-VIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQED 485
            ++  +++  GKG+ RRK K VHK++  DDK+LQ+TLK++ V  I AIEEVN+FK+D  VI F  PKV AS+ +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q    N   GA   ++D
Sbjct:   49 RLTNSLKNRGKGTPRRKVKKVHKSSGADDKKLQATLKKMNVQPIQAIEEVNMFKEDGNVIHFGAPKVHASVPSNTFALYGNGEEKELTELVPGILNQLGPDSLASLRKLAESYQNMQKNQ-AGAEGKKDD 177          
BLAST of CX288613 vs. ExPASy Swiss-Prot
Match: NACB_ASPFU (Nascent polypeptide-associated complex subunit beta OS=Aspergillus fumigatus GN=egd1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 2.903e-27
Identity = 61/121 (50.41%), Postives = 86/121 (71.07%), Query Frame = 3
Query:  126 GKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDV-VIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQED 485
            GKG+ RRK K VHK++  DDK+LQ+TLK++ V  I AIEEVN+FK+D  VI F  PKV AS+ +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q     AG      +++
Sbjct:   49 GKGTPRRKVKKVHKSSGADDKKLQTTLKKMNVQPIQAIEEVNMFKEDGNVIHFAAPKVHASVPSNTFALYGNGEEKELTELVPGILNQLGPDSLASLRKLAESYQNMQKQAGAEGKKDEDE 169          
BLAST of CX288613 vs. ExPASy Swiss-Prot
Match: NACB_ASPCL (Nascent polypeptide-associated complex subunit beta OS=Aspergillus clavatus GN=egd1 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.951e-27
Identity = 67/146 (45.89%), Postives = 93/146 (63.70%), Query Frame = 3
Query:   78 MNVEKLMKMAGAVRTG---------GKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDV-VIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQED 485
            M+  KL +M  +VR           GKG+ RRK K VHK++  DDK+LQ+TLK++ V  I AIEEVN+FK+D  VI F  PKV AS+ +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q    +         ED
Sbjct:    1 MDQAKLARMQASVRIDKSATNPINRGKGTPRRKVKKVHKSSGADDKKLQTTLKKMNVQPIQAIEEVNMFKEDGNVIHFAAPKVHASVPSNTFALYGNGEEKELTELVPGILNQLGPDSLASLRKLAESYQNMQKSQAGAEGKKDED 146          
BLAST of CX288613 vs. ExPASy Swiss-Prot
Match: BT3L3_HUMAN (Transcription factor BTF3 homolog 3 OS=Homo sapiens GN=BTF3L3 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 6.466e-27
Identity = 61/133 (45.86%), Postives = 88/133 (66.17%), Query Frame = 3
Query:   90 KLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQED 485
            KL K+   VR GGKG+  RKKK  H+T T DDK+LQ +LK++ VN I  IE+VN+F +   VI F NPK QAS+A NT+ ++G  + K++ ++LP +++QLG D+L +LR+LAE   KQ  +      T  +D
Sbjct:   40 KLAKLQAQVRIGGKGTAHRKKKVFHRTATADDKKLQFSLKKLQVNNISGIEKVNMFTNQGTVIHFNNPKFQASLAVNTFTITGHAEAKQVTEMLPSVLSQLGADSLTSLRRLAEVLPKQPVDGKAPLATGGDD 172          
BLAST of CX288613 vs. ExPASy Swiss-Prot
Match: NACB_MAGGR (Nascent polypeptide-associated complex subunit beta OS=Magnaporthe grisea GN=EGD1 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 8.445e-27
Identity = 61/118 (51.69%), Postives = 83/118 (70.34%), Query Frame = 3
Query:   87 EKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDV-VIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 437
            E+L K+  + R GGKG+ RRK K     +  DDK+LQ TLK++ V  I AIEEVN+FK D  VI F  PKV A++ ANT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q
Sbjct:    6 ERLKKLGASARIGGKGTPRRKMKRAPARSGGDDKKLQQTLKKLNVQPIQAIEEVNMFKSDGNVIHFAAPKVHAAVPANTFAIYGNGEDKELTELVPGILNQLGPDSLASLRKLAESYQ 123          
BLAST of CX288613 vs. ExPASy Swiss-Prot
Match: NACB_NEUCR (Nascent polypeptide-associated complex subunit beta OS=Neurospora crassa GN=egd-1 PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 3.209e-26
Identity = 62/124 (50.00%), Postives = 85/124 (68.55%), Query Frame = 3
Query:   87 EKLMKMAGAVRTG-GKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDV-VIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPN 452
            E+L K+  + R G GKG+ RRK K     +  DDK+LQ+TLK++ V  I AIEEVN+FK D  VI F  PKV A++ ANT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q    N
Sbjct:    6 ERLKKLGASARIGIGKGTPRRKVKRAPARSAGDDKKLQATLKKVNVQPIQAIEEVNMFKSDGNVIHFAAPKVHAAVPANTFAIYGNGEDKELTELVPGILNQLGPDSLASLRKLAESYQNMQKN 129          
BLAST of CX288613 vs. ExPASy Swiss-Prot
Match: NACB_CRYNE (Nascent polypeptide-associated complex subunit beta OS=Cryptococcus neoformans GN=EGD1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.717e-25
Identity = 67/140 (47.86%), Postives = 96/140 (68.57%), Query Frame = 3
Query:   78 MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTT---DDKRLQSTLKRIGVNAIPAIEEVNIFKDDV-VIQFLNPKVQ--ASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ-----KQAPNAGTG 464
            M+ EKL K+   VR GGKG+ RRK   V K+ T+   DD++LQ+ LK++GV  I  +EEVN+FK+D  V+ F  P+VQ  A++ +NT  + G  QTK+L +++PGI+NQLGPD+L NLR+LAE +Q     + A  AG+G
Sbjct:    1 MDKEKLAKLQSQVRIGGKGTPRRK--VVKKSVTSSQGDDRKLQAALKKLGVQPITGVEEVNMFKEDGNVLHFGAPRVQVHAALPSNTLAIYGPGQTKELTELVPGILNQLGPDSLANLRRLAESYQSLTARQAAAAAGSG 138          
BLAST of CX288613 vs. ExPASy Swiss-Prot
Match: NACB_CHAGB (Nascent polypeptide-associated complex subunit beta OS=Chaetomium globosum GN=EGD1 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.032e-24
Identity = 59/119 (49.58%), Postives = 83/119 (69.75%), Query Frame = 3
Query:   87 EKLMKMAGAVRTG-GKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDV-VIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ 437
            E+L K+  + R G GKG+ RRK K     +  DDK+LQ +LK++ V  I AIEEVN+FK D  VI F  PKV A++ +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q
Sbjct:    6 ERLKKLGASARIGTGKGTPRRKVKRAPARSGADDKKLQQSLKKLNVQPIQAIEEVNMFKSDGNVIHFAAPKVHAAVPSNTFAIYGNGEDKELTELVPGILNQLGPDSLASLRKLAESYQ 124          
BLAST of CX288613 vs. ExPASy Swiss-Prot
Match: NACB_USTMA (Nascent polypeptide-associated complex subunit beta OS=Ustilago maydis GN=EGD1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.141e-23
Identity = 61/141 (43.26%), Postives = 87/141 (61.70%), Query Frame = 3
Query:   78 MNVEKLMKMAGAVRTGGKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQ----KQAPNAGTGAPTTQED 485
            +N EKL K+  A RTGGKG+ RRK     K    +D +LQ+ LK++ V  +  +EEVN+FK+D  V+ F  PKV     +NT+ V G    K+L +++PGI+NQLGPD+L +LRKLAE +Q    + A +    A T  +D
Sbjct:    3 LNQEKLAKLQAASRTGGKGTPRRKMAPKPKGPGGEDPKLQAALKKLQVEPVSGVEEVNMFKEDGNVLHFAAPKVHGLPTSNTFAVYGNGVDKELTELVPGILNQLGPDSLASLRKLAESYQAMNAQHAASQAAAAGTKDDD 143          
BLAST of CX288613 vs. ExPASy Swiss-Prot
Match: NACB_GIBZE (Nascent polypeptide-associated complex subunit beta OS=Gibberella zeae GN=EGD1 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.337e-23
Identity = 60/135 (44.44%), Postives = 82/135 (60.74%), Query Frame = 3
Query:   87 EKLMKMAGAVRTG----------GKGSVRRKKKAVHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDDV-VIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAG 458
            E+L K+    RTG          GKG+ RRK K     +  DDK+LQ  LK++    I AIEEVN+FK D  VI F  PKV A++ +NT+ + G  + K+L +++PGI+NQLGPD+L +LRKLAE +Q      G
Sbjct:    6 ERLKKLGLGARTGRTSQLTEQLSGKGTPRRKVKRAPARSGADDKKLQLALKKLNTQPIQAIEEVNMFKQDGNVIHFAAPKVHAAVPSNTFAIYGNGEDKELTELVPGILNQLGPDSLASLRKLAESYQNLQKEKG 140          
The following BLAST results are available for this feature:
BLAST of CX288613 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
NACB_ASPOR2.903e-2748.46Nascent polypeptide-associated complex subunit bet... [more]
NACB_ASPFU2.903e-2750.41Nascent polypeptide-associated complex subunit bet... [more]
NACB_ASPCL4.951e-2745.89Nascent polypeptide-associated complex subunit bet... [more]
BT3L3_HUMAN6.466e-2745.86Transcription factor BTF3 homolog 3 OS=Homo sapien... [more]
NACB_MAGGR8.445e-2751.69Nascent polypeptide-associated complex subunit bet... [more]
NACB_NEUCR3.209e-2650.00Nascent polypeptide-associated complex subunit bet... [more]
NACB_CRYNE2.717e-2547.86Nascent polypeptide-associated complex subunit bet... [more]
NACB_CHAGB1.032e-2449.58Nascent polypeptide-associated complex subunit bet... [more]
NACB_USTMA1.141e-2343.26Nascent polypeptide-associated complex subunit bet... [more]
NACB_GIBZE4.337e-2344.44Nascent polypeptide-associated complex subunit bet... [more]

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Properties
Property NameValue
Genbank descriptionC02002D06SK IF1 Citrus clementina cDNA clone C02002D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288613 ID=CX288613; Name=CX288613; organism=Citrus clementina; type=EST; length=485bp
GAAGAACAAAAACTAAAGGGCTCTTATCTTCTTCTTCACCAAATTCTTTG
TCCCCACACAAAAACCCTAGCTCCAAGATGAATGTTGAGAAGCTAATGAA
GATGGCCGGTGCAGTTCGCACCGGTGGTAAGGGTAGTGTGAGAAGAAAGA
AGAAGGCTGTTCATAAGACAACAACCACCGATGACAAGAGGCTTCAGAGC
ACCTTGAAGAGAATAGGAGTGAATGCTATTCCTGCAATTGAGGAAGTTAA
CATTTTCAAGGATGACGTCGTTATTCAGTTCTTAAATCCCAAAGTACAAG
CTTCAATTGCTGCCAACACATGGGTAGTTAGTGGTGCCCCACAAACCAAG
AAGTTGCAGGATATTCTCCCTGGAATTATCAATCAATTGGGGCCAGATAA
TTTGGACAACCTGAGGAAGTTGGCGGAGCAGTTTCAGAAGCAAGCACCTA
ATGCAGGAACTGGTGCACCCACGACTCAAGAGGAC
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