CX288616

Overview
NameCX288616
Unique NameCX288616
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length570
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288616 vs. ExPASy Swiss-Prot
Match: Y525_THESM (DNA-binding protein TSIB_0525 OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=TSIB_0525 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.286e-12
Identity = 40/99 (40.40%), Postives = 68/99 (68.69%), Query Frame = 3
Query:  147 ELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLL 443
            ++E IR++++ EL  Q+ +  Q+ +E+ Q  QE    E + + Q ++ QIL++EARERL R+ LV+PE AR VE I+++  Q GQI E++++E+L  +L
Sbjct:    4 DIEEIRRKKLLEL--QKKLAEQKRAEEEQIRQE---MELEAQLQAIMKQILTSEARERLTRVKLVRPELARQVELILVQLYQAGQITERITDEKLKRIL 97          
BLAST of CX288616 vs. ExPASy Swiss-Prot
Match: Y117_METBU (DNA-binding protein Mbur_0117 OS=Methanococcoides burtonii (strain DSM 6242) GN=Mbur_0117 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.899e-12
Identity = 41/99 (41.41%), Postives = 61/99 (61.62%), Query Frame = 3
Query:  147 ELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLL 443
            +LEAIRQ+R+ EL  QQ   S QN  Q    QE A+ E DE+ + +L Q+++ EARERL R+ L + E    +E  ++  AQ G++  K+ +E+L  LL
Sbjct:    3 DLEAIRQKRLAELQQQQS--SPQNDAQAAYQQEQAQAERDEQVKAVLRQVMTPEARERLTRLRLSRKELVEQLESQLVMLAQNGRLQTKIDDEKLKVLL 99          
BLAST of CX288616 vs. ExPASy Swiss-Prot
Match: Y1060_PYRHO (DNA-binding protein PH1060 OS=Pyrococcus horikoshii GN=PH1060 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.899e-12
Identity = 44/107 (41.12%), Postives = 71/107 (66.36%), Query Frame = 3
Query:  132 QMADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREA---DERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLL 443
            +MA+ ++E IR+R++ EL        Q+   + QKAQE+A+R+    + + Q +L +IL+ EARERLAR+ LV+PE AR VE I+++  Q GQI E++ + +L  +L
Sbjct:    3 EMAE-DIEEIRRRKLMEL--------QRKYLEQQKAQEEAERQQALIEAQIQAILRKILTPEARERLARVKLVRPELARQVELILVQLYQAGQITERIDDAKLKRIL 100          
BLAST of CX288616 vs. ExPASy Swiss-Prot
Match: Y204_PICTO (DNA-binding protein PTO0204 OS=Picrophilus torridus GN=PTO0204 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.686e-12
Identity = 39/101 (38.61%), Postives = 62/101 (61.39%), Query Frame = 3
Query:  141 DPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLL 443
            D EL+ IR+R+M E        +      +++ Q+ A  E + RRQ +L QILS EARERL+R+ LV+P+    VE+ +++ A MG+I + +S+  L S+L
Sbjct:    4 DDELDEIRRRKMAEYQ------NMMQERAYEEEQKKAAAEEEARRQQILRQILSPEARERLSRLKLVRPDLVENVENQLIQLAGMGRINKVISDNELKSIL 98          
BLAST of CX288616 vs. ExPASy Swiss-Prot
Match: Y008_THEVO (DNA-binding protein TV0008 OS=Thermoplasma volcanium GN=TV0008 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.527e-11
Identity = 42/103 (40.78%), Postives = 62/103 (60.19%), Query Frame = 3
Query:  141 DPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADE--RRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLL 443
            D ELE IR+R+M+EL        Q+ + Q Q A+E+ K+   E  RRQ +L QIL   ARERL  + LV+P+ A  VE+ +++ A MG+I   + E  +I +L
Sbjct:    4 DEELEKIRRRQMEEL--------QRQAMQRQMAEEEEKQREIEKARRQQILRQILDPSARERLNNVRLVRPDLADNVENQLIQLASMGRINRIIKESDIIDIL 98          
BLAST of CX288616 vs. ExPASy Swiss-Prot
Match: Y157_METMP (DNA-binding protein MMP0157 OS=Methanococcus maripaludis GN=MMP0157 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.301e-11
Identity = 37/98 (37.76%), Postives = 60/98 (61.22%), Query Frame = 3
Query:  153 EAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLE 446
            E IRQRR+QE+ A+       N  + Q+  ++ + + + ++Q +L QILS EAR RLARI L KP+ A  VE  +++ AQ G++   +++E    LL+
Sbjct:    4 EEIRQRRLQEMQAKAQAQGAANDPEAQRQMQEQQMQYEMQKQKILRQILSEEARSRLARIKLAKPQFAEQVEMQLIQLAQAGKLPVPLTDEYFKGLLD 101          
BLAST of CX288616 vs. ExPASy Swiss-Prot
Match: Y925_PYRAB (DNA-binding protein PYRAB09250 OS=Pyrococcus abyssi GN=PYRAB09250 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.311e-11
Identity = 41/102 (40.20%), Postives = 65/102 (63.73%), Query Frame = 3
Query:  147 ELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREA---DERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLL 443
            ++E IR+R++ EL        Q+   + QKAQE+  R+    + + Q +L +IL+ EARERLAR+ LV+PE AR VE I+++  Q GQI E++ + +L  +L
Sbjct:    7 DIEEIRRRKLLEL--------QRKYLEQQKAQEEEARQQALIEAQIQAILRKILTPEARERLARVRLVRPELARQVELILVQLYQAGQITERIDDAKLKKIL 100          
BLAST of CX288616 vs. ExPASy Swiss-Prot
Match: Y455_METBF (DNA-binding protein Mbar_A0455 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=Mbar_A0455 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.311e-11
Identity = 39/101 (38.61%), Postives = 62/101 (61.39%), Query Frame = 3
Query:  141 DPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLL 443
            D EL  IR+RR+ E+  QQ   +QQ+  Q    QE AK E + ++Q +L QIL+ EARERL  + + +P     +E  ++  AQ G++  ++S+E+L +LL
Sbjct:    8 DDELNEIRKRRLAEIQRQQAQ-NQQSDIQAAYQQEQAKAEMEAQKQAILRQILTPEARERLTTLKMSRPAIGEQLEMQLISLAQSGRLPSQISDEQLKTLL 107          
BLAST of CX288616 vs. ExPASy Swiss-Prot
Match: Y3016_METHJ (DNA-binding protein Mhun_3016 OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=Mhun_3016 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.630e-11
Identity = 43/104 (41.35%), Postives = 61/104 (58.65%), Query Frame = 3
Query:  135 MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLE 446
            MA+ EL  IR+R+M E M Q     QQ+ E+ Q        + + + QM L QIL  EARERL  I L KP+ AR VE  ++  AQ G+I  K+S+++L  +L+
Sbjct:    1 MAEDELAEIRRRKMAE-MQQHAAMQQQDMERQQ--------QYEAQMQMALMQILEPEARERLNTIKLTKPDFARAVEQQLVMLAQSGRIKNKISDDQLKVILQ 95          
BLAST of CX288616 vs. ExPASy Swiss-Prot
Match: Y1886_METB6 (DNA-binding protein Mboo_1886 OS=Methanoregula boonei (strain 6A8) GN=Mboo_1886 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.353e-11
Identity = 41/103 (39.81%), Postives = 61/103 (59.22%), Query Frame = 3
Query:  135 MADPELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLL 443
            M D EL  IR+RRM +L  QQ  G QQ  ++  + Q+  K +     QM+L Q+L  +ARERL  I L KP+ A  VE  ++  AQ G++ +K+++ +L  LL
Sbjct:    1 MGDDELSEIRKRRMAQL--QQQAGDQQAMQEEVERQQRLKSQI----QMVLMQVLEPDARERLNTIRLTKPDFASAVEQQLVMLAQSGRLRQKITDAQLKDLL 97          
The following BLAST results are available for this feature:
BLAST of CX288616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
Y525_THESM2.286e-1240.40DNA-binding protein TSIB_0525 OS=Thermococcus sibi... [more]
Y117_METBU3.899e-1241.41DNA-binding protein Mbur_0117 OS=Methanococcoides ... [more]
Y1060_PYRHO3.899e-1241.12DNA-binding protein PH1060 OS=Pyrococcus horikoshi... [more]
Y204_PICTO8.686e-1238.61DNA-binding protein PTO0204 OS=Picrophilus torridu... [more]
Y008_THEVO2.527e-1140.78DNA-binding protein TV0008 OS=Thermoplasma volcani... [more]
Y157_METMP3.301e-1137.76DNA-binding protein MMP0157 OS=Methanococcus marip... [more]
Y925_PYRAB4.311e-1140.20DNA-binding protein PYRAB09250 OS=Pyrococcus abyss... [more]
Y455_METBF4.311e-1138.61DNA-binding protein Mbar_A0455 OS=Methanosarcina b... [more]
Y3016_METHJ5.630e-1141.35DNA-binding protein Mhun_3016 OS=Methanospirillum ... [more]
Y1886_METB67.353e-1139.81DNA-binding protein Mboo_1886 OS=Methanoregula boo... [more]

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Properties
Property NameValue
Genbank descriptionC02002D10SK IF1 Citrus clementina cDNA clone C02002D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288616 ID=CX288616; Name=CX288616; organism=Citrus clementina; type=EST; length=570bp
ATTCGGCACGAGGCGCCACCTAAAACATATTCTAATTTCTATTGAGCGGA
GATCGAATCATAAACCCCAAGGGGAAGGAAGCAGAAACAGAGTTCAAAGT
AGGCAGCGTTTGCTCATCAATCCATTCAAATCAAATGGCTGACCCTGAAC
TAGAAGCAATTAGACAAAGAAGAATGCAAGAGCTCATGGCCCAACAAGGC
GTGGGGAGTCAACAAAATTCTGAGCAGCATCAGAAAGCTCAGGAAGATGC
CAAGAGGGAGGCAGATGAACGGAGACAAATGATGCTTAGCCAGATTTTGT
CAACCGAAGCACGTGAAAGACTTGCTCGAATTGCTTTGGTGAAACCCGAG
AAGGCTAGAGGTGTTGAGGACATTATATTGAGATCTGCCCAAATGGGTCA
GATAGTTGAGAAGGTTTCTGAAGAGAGGCTCATATCATTGCTGGAACAGA
TTAACACCCAAACCACCAAACAGACCAAAGTCACAATCCAAAGGCGCCGG
AGTGTTTTGGAAGATGATGATTAACCTTGTGTAATTTCTGGTCATCATGG
TGTGATACACAATGCTATTC
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