CX288616

Overview
NameCX288616
Unique NameCX288616
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length570
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX288616 vs. ExPASy Swiss-Prot
Match: Y1278_PYRKO (DNA-binding protein TK1278 OS=Pyrococcus kodakaraensis GN=TK1278 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.353e-11
Identity = 42/102 (41.18%), Postives = 66/102 (64.71%), Query Frame = 3 
Query:  147 ELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDA-KREADERRQM--MLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLL 443
            ++E IR+R++ EL        Q+   + QKAQE+A KRE +   Q+  ++ +IL+ EARERL R+ LVKPE AR VE ++++  Q GQI E++ + +L  +L
Sbjct:    4 DIEEIRKRKLMEL--------QKKYLEQQKAQEEALKREMELEAQLEAIMRKILTPEARERLGRVKLVKPELARQVELLLVQLYQAGQIRERIDDAKLKRIL 97
[Close]
BLAST of CX288616 vs. ExPASy Swiss-Prot
Match: Y998_META3 (DNA-binding protein Maeo_0998 OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=Maeo_0998 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.604e-11
Identity = 37/100 (37.00%), Postives = 64/100 (64.00%), Query Frame = 3 
Query:  147 ELEAIRQRRMQELMAQQGVGSQQNSEQHQKAQEDAKREADERRQMMLSQILSTEARERLARIALVKPEKARGVEDIILRSAQMGQIVEKVSEERLISLLE 446
            ++E I++++M EL  QQ  G+  N E+ Q+ QE  +   + +++ ++ +ILS EAR RL+ I +VKPE A  VE  +++ AQ G++   VS+E   +LL+
Sbjct:    2 DIEEIKRQKMMELQQQQAQGAP-NPEEIQQQQEQERAAYEAQKKQIMKKILSEEARHRLSNIKMVKPEFAEQVEMQLIQLAQSGRLPIPVSDEYFKTLLD 100
The following BLAST results are available for this feature:
BLAST of CX288616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
Y1278_PYRKO7.353e-1141.18DNA-binding protein TK1278 OS=Pyrococcus kodakarae... [more]
Y998_META39.604e-1137.00DNA-binding protein Maeo_0998 OS=Methanococcus aeo... [more]

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Properties
Property NameValue
Genbank descriptionC02002D10SK IF1 Citrus clementina cDNA clone C02002D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288616 ID=CX288616; Name=CX288616; organism=Citrus clementina; type=EST; length=570bp
ATTCGGCACGAGGCGCCACCTAAAACATATTCTAATTTCTATTGAGCGGA
GATCGAATCATAAACCCCAAGGGGAAGGAAGCAGAAACAGAGTTCAAAGT
AGGCAGCGTTTGCTCATCAATCCATTCAAATCAAATGGCTGACCCTGAAC
TAGAAGCAATTAGACAAAGAAGAATGCAAGAGCTCATGGCCCAACAAGGC
GTGGGGAGTCAACAAAATTCTGAGCAGCATCAGAAAGCTCAGGAAGATGC
CAAGAGGGAGGCAGATGAACGGAGACAAATGATGCTTAGCCAGATTTTGT
CAACCGAAGCACGTGAAAGACTTGCTCGAATTGCTTTGGTGAAACCCGAG
AAGGCTAGAGGTGTTGAGGACATTATATTGAGATCTGCCCAAATGGGTCA
GATAGTTGAGAAGGTTTCTGAAGAGAGGCTCATATCATTGCTGGAACAGA
TTAACACCCAAACCACCAAACAGACCAAAGTCACAATCCAAAGGCGCCGG
AGTGTTTTGGAAGATGATGATTAACCTTGTGTAATTTCTGGTCATCATGG
TGTGATACACAATGCTATTC
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