CX288621

Overview
NameCX288621
Unique NameCX288621
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length489
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10458 contig Ccv1_Contig10458:21..509. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B3_MEDTR (Probable histone H2B.3 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 177.178 bits (448), Expect = 3.477e-44
Identity = 93/109 (85.32%), Postives = 98/109 (89.91%), Query Frame = 3
Query:  141 ISKDGGGVEXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            ISK+G   +        +VETYKIYIFKVLKQVHPDIG+SSKAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   31 ISKEGSS-DKKKKRTKKSVETYKIYIFKVLKQVHPDIGVSSKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 138          
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B1_ARATH (Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790 PE=1 SV=3)

HSP 1 Score: 177.178 bits (448), Expect = 3.477e-44
Identity = 90/92 (97.83%), Postives = 92/92 (100.00%), Query Frame = 3
Query:  192 NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   57 NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 148          
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B9_ARATH (Histone H2B.9 OS=Arabidopsis thaliana GN=At5g02570 PE=1 SV=3)

HSP 1 Score: 174.866 bits (442), Expect = 1.726e-43
Identity = 93/111 (83.78%), Postives = 97/111 (87.39%), Query Frame = 3
Query:  141 ISKDGGGVEXXXXXXXX--NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            I+K+GG  E          + ETYKIYIFKVLKQVHPDIGIS KAMGIMNSFINDIFEKLAQE+SRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   22 IAKEGGTSEIVKKKKKTKKSTETYKIYIFKVLKQVHPDIGISGKAMGIMNSFINDIFEKLAQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 132          
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B7_ARATH (Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030 PE=1 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 2.254e-43
Identity = 90/105 (85.71%), Postives = 94/105 (89.52%), Query Frame = 3
Query:  153 GGGVEXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            G G +        +VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA E+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   41 GAGGDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145          
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B6_ARATH (Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 2.254e-43
Identity = 90/105 (85.71%), Postives = 94/105 (89.52%), Query Frame = 3
Query:  153 GGGVEXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            G G +        +VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA E+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   46 GAGGDKKKKMKKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150          
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B1_ORYSJ (Histone H2B.1 OS=Oryza sativa subsp. japonica GN=H2B1 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.254e-43
Identity = 92/109 (84.40%), Postives = 98/109 (89.91%), Query Frame = 3
Query:  144 SKDGG-GVEXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            SK+GG G +        +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLAQEA+RLARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   44 SKEGGAGDKKGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSN 152          
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B1_ORYSI (Histone H2B.1 OS=Oryza sativa subsp. indica GN=OsI_010709 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.254e-43
Identity = 92/109 (84.40%), Postives = 98/109 (89.91%), Query Frame = 3
Query:  144 SKDGG-GVEXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            SK+GG G +        +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLAQEA+RLARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   44 SKEGGAGDKKGRKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSN 152          
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B10_ARATH (Histone H2B.10 OS=Arabidopsis thaliana GN=At5g22880 PE=1 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 2.254e-43
Identity = 89/92 (96.74%), Postives = 91/92 (98.91%), Query Frame = 3
Query:  192 NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLA E+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   54 NVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAGESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145          
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B2_MEDTR (Probable histone H2B.2 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 2.944e-43
Identity = 92/111 (82.88%), Postives = 96/111 (86.49%), Query Frame = 3
Query:  141 ISKDGGGV--EXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            + K+GG    E        +VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKL QE+SRLARYNKKPTITSREIQTAVRLVLPGELAKH VSEGTKAVTKFTSS
Sbjct:   38 LPKEGGSAAGEKKKKRSKKSVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLTQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHDVSEGTKAVTKFTSS 148          
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B1_MAIZE (Histone H2B.1 OS=Zea mays PE=2 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 8.565e-43
Identity = 89/108 (82.41%), Postives = 96/108 (88.89%), Query Frame = 3
Query:  144 SKDGGGVEXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            SK+GG  +        +VETYKIYIFKVLKQVHPDIGISSKAM IMNSFINDIFEKLA E+++LARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   44 SKEGGEGKKGKKKAKKSVETYKIYIFKVLKQVHPDIGISSKAMSIMNSFINDIFEKLAAESAKLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 151          
The following BLAST results are available for this feature:
BLAST of CX288621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B3_MEDTR3.477e-4485.32Probable histone H2B.3 OS=Medicago truncatula PE=3... [more]
H2B1_ARATH3.477e-4497.83Histone H2B.1 OS=Arabidopsis thaliana GN=At1g07790... [more]
H2B9_ARATH1.726e-4383.78Histone H2B.9 OS=Arabidopsis thaliana GN=At5g02570... [more]
H2B7_ARATH2.254e-4385.71Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030... [more]
H2B6_ARATH2.254e-4385.71Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 ... [more]
H2B1_ORYSJ2.254e-4384.40Histone H2B.1 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B1_ORYSI2.254e-4384.40Histone H2B.1 OS=Oryza sativa subsp. indica GN=OsI... [more]
H2B10_ARATH2.254e-4396.74Histone H2B.10 OS=Arabidopsis thaliana GN=At5g2288... [more]
H2B2_MEDTR2.944e-4382.88Probable histone H2B.2 OS=Medicago truncatula PE=3... [more]
H2B1_MAIZE8.565e-4382.41Histone H2B.1 OS=Zea mays PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionC02002E04SK IF1 Citrus clementina cDNA clone C02002E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288621 ID=CX288621; Name=CX288621; organism=Citrus clementina; type=EST; length=489bp
ATTCAGAAGAATCTTCTCACGCCCTTCAGTTTTTCTCGTCAAAAGGAACG
ATGGCGCCGAAAGCCGAGAAGAAGCCAGCGGAGAAAAAGCCGGTAGCCGA
GAAAGCCCCAGCCGAGAAGAGGCCGAAAGCCGAGAAGAAGATCTCGAAAG
ATGGCGGCGGCGTCGAGAAAAAGAAGAGGAAGTTGAAGAAGAATGTGGAG
ACGTACAAGATCTACATTTTCAAGGTCCTGAAGCAGGTTCATCCCGATAT
CGGTATCTCCAGCAAGGCCATGGGCATCATGAACAGTTTCATCAACGATA
TCTTCGAGAAATTAGCCCAAGAGGCGTCTCGTCTCGCTAGGTACAACAAG
AAGCCGACGATCACGTCGAGGGAGATCCAGACCGCCGTGAGATTGGTCTT
GCCCGGTGAATTGGCCAAGCACGCCGTGTCGGAGGGGACCAAGGCCGTTA
CCAAGTTCACGAGCTCTTGATTTTGTGCAATTTTTTGTC
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