CX288621 | Citrus Genome Database

Overview


Name	CX288621
Unique Name	CX288621
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	489

Libraries


Library Name	Type
IF1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B7_CHICK (Histone H2B 7 OS=Gallus gallus GN=H2B-VII PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 7.023e-37
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = 3

Query:  198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            E+Y IY++KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125

[Close]

BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B12_XENLA (Histone H2B 1.2 OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 7.023e-37
Identity = 74/90 (82.22%), Postives = 85/90 (94.44%), Query Frame = 3

Query:  198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            E+Y IY++KV+KQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   36 ESYAIYVYKVMKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125

[Close]

BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B_SIPNU (Histone H2B OS=Sipunculus nudus GN=H2B PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 9.172e-37
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = 3

Query:  198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YN++ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   33 ESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNRRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122

[Close]

BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B1N_BOVIN (Histone H2B type 1-N OS=Bos taurus GN=HIST1H2BN PE=1 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 1.198e-36
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = 3

Query:  198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            E+Y +Y++KVLKQVHPD GISSKAMG MNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGNMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125

[Close]

BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B1K_MACFA (Histone H2B type 1-K OS=Macaca fascicularis GN=HIST1H2BK PE=2 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 1.198e-36
Identity = 73/90 (81.11%), Postives = 85/90 (94.44%), Query Frame = 3

Query:  198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            E+Y +Y++KVLK+VHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   36 ESYSVYVYKVLKRVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125

[Close]

BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B_ASTPE (Histone H2B OS=Asterina pectinifera PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.565e-36
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = 3

Query:  198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            E+Y IYI+KV+KQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNKK TITSRE+QTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   32 ESYGIYIYKVMKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKKSTITSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 121

[Close]

BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2BFS_HUMAN (Histone H2B type F-S OS=Homo sapiens GN=H2BFS PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 1.565e-36
Identity = 73/90 (81.11%), Postives = 84/90 (93.33%), Query Frame = 3

Query:  198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRL  YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLPHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125

[Close]

BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B1A_MOUSE (Histone H2B type 1-A OS=Mus musculus GN=Hist1h2ba PE=2 SV=3)

HSP 1 Score: 151.754 bits (382), Expect = 1.565e-36
Identity = 75/90 (83.33%), Postives = 83/90 (92.22%), Query Frame = 3

Query:  198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            E+Y IYI+KVLKQVHPD GISSKAM IMNSF+ DIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   37 ESYSIYIYKVLKQVHPDTGISSKAMSIMNSFVTDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 126

[Close]

BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B_RHASC (Histone H2B OS=Rhacophorus schlegelii GN=histh2b PE=1 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 2.043e-36
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = 3

Query:  198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            E+Y IY++KVLKQVHPD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   36 ESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125

[Close]

BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B_ACRFO (Histone H2B OS=Acropora formosa PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.043e-36
Identity = 74/90 (82.22%), Postives = 85/90 (94.44%), Query Frame = 3

Query:  198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            E+Y IYI+KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E+SRL+ YNKK TI+SREIQTA+RL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   35 ESYAIYIYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAVESSRLSLYNKKATISSREIQTAIRLLLPGELAKHAVSEGTKAVTKYTSS 124

The following BLAST results are available for this feature:

BLAST of CX288621 vs. ExPASy Swiss-Prot

BLAST of CX288621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205


Match Name	E-value	Identity	Description
H2B7_CHICK	7.023e-37	83.33	Histone H2B 7 OS=Gallus gallus GN=H2B-VII PE=1 SV=...	[more]
H2B12_XENLA	7.023e-37	82.22	Histone H2B 1.2 OS=Xenopus laevis PE=1 SV=2	[more]
H2B_SIPNU	9.172e-37	83.33	Histone H2B OS=Sipunculus nudus GN=H2B PE=1 SV=2	[more]
H2B1N_BOVIN	1.198e-36	82.22	Histone H2B type 1-N OS=Bos taurus GN=HIST1H2BN PE...	[more]
H2B1K_MACFA	1.198e-36	81.11	Histone H2B type 1-K OS=Macaca fascicularis GN=HIS...	[more]
H2B_ASTPE	1.565e-36	82.22	Histone H2B OS=Asterina pectinifera PE=1 SV=2	[more]
H2BFS_HUMAN	1.565e-36	81.11	Histone H2B type F-S OS=Homo sapiens GN=H2BFS PE=1...	[more]
H2B1A_MOUSE	1.565e-36	83.33	Histone H2B type 1-A OS=Mus musculus GN=Hist1h2ba ...	[more]
H2B_RHASC	2.043e-36	82.22	Histone H2B OS=Rhacophorus schlegelii GN=histh2b P...	[more]
H2B_ACRFO	2.043e-36	82.22	Histone H2B OS=Acropora formosa PE=3 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	C02002E04SK IF1 Citrus clementina cDNA clone C02002E04, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX288621 ID=CX288621; Name=CX288621; organism=Citrus clementina; type=EST; length=489bp
ATTCAGAAGAATCTTCTCACGCCCTTCAGTTTTTCTCGTCAAAAGGAACG
ATGGCGCCGAAAGCCGAGAAGAAGCCAGCGGAGAAAAAGCCGGTAGCCGA
GAAAGCCCCAGCCGAGAAGAGGCCGAAAGCCGAGAAGAAGATCTCGAAAG
ATGGCGGCGGCGTCGAGAAAAAGAAGAGGAAGTTGAAGAAGAATGTGGAG
ACGTACAAGATCTACATTTTCAAGGTCCTGAAGCAGGTTCATCCCGATAT
CGGTATCTCCAGCAAGGCCATGGGCATCATGAACAGTTTCATCAACGATA
TCTTCGAGAAATTAGCCCAAGAGGCGTCTCGTCTCGCTAGGTACAACAAG
AAGCCGACGATCACGTCGAGGGAGATCCAGACCGCCGTGAGATTGGTCTT
GCCCGGTGAATTGGCCAAGCACGCCGTGTCGGAGGGGACCAAGGCCGTTA
CCAAGTTCACGAGCTCTTGATTTTGTGCAATTTTTTGTC