CX288621

Overview
NameCX288621
Unique NameCX288621
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length489
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10458 contig Ccv1_Contig10458:21..509. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B1_RAT (Histone H2B type 1 OS=Rattus norvegicus PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 5.033e-35
Identity = 73/90 (81.11%), Postives = 83/90 (92.22%), Query Frame = 3 
Query:  198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A E  RLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGER-RLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 124
[Close]
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2BE1_PSAMI (Histone H2B.1, embryonic OS=Psammechinus miliaris PE=3 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 6.573e-35
Identity = 71/90 (78.89%), Postives = 84/90 (93.33%), Query Frame = 3 
Query:  198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            E+Y IYI+KVLKQVHPD G+SS+AM IMNSF+NDIFE++A EASRL +YNKK TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T++
Sbjct:   33 ESYGIYIYKVLKQVHPDTGVSSRAMTIMNSFVNDIFERIAGEASRLTQYNKKSTISSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTTA 122
[Close]
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B_EUPCR (Histone H2B OS=Euplotes crassus GN=H2B1 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 8.585e-35
Identity = 69/90 (76.67%), Postives = 83/90 (92.22%), Query Frame = 3 
Query:  198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            ET+ +YI++VLKQVHP+ G+S K+M IMNSFINDIFEK+A EAS+L RYNKK T++SRE+QTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   24 ETFSVYIYRVLKQVHPETGVSKKSMSIMNSFINDIFEKIALEASKLVRYNKKHTLSSREVQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 113
[Close]
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B_GIBZE (Histone H2B OS=Gibberella zeae GN=HTB1 PE=3 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 1.121e-34
Identity = 70/90 (77.78%), Postives = 83/90 (92.22%), Query Frame = 3 
Query:  198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   46 ETYSSYIYKVLKQVHPDTGISNRAMSILNSFVNDIFERVASEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 135
[Close]
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B_ROSNE (Histone H2B OS=Rosellinia necatrix GN=hh2b PE=3 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 1.464e-34
Identity = 70/90 (77.78%), Postives = 83/90 (92.22%), Query Frame = 3 
Query:  198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   45 ETYSSYIYKVLKQVHPDTGISNRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 134
[Close]
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B_PODAN (Histone H2B OS=Podospora anserina GN=HTB1 PE=3 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 1.464e-34
Identity = 70/90 (77.78%), Postives = 83/90 (92.22%), Query Frame = 3 
Query:  198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   46 ETYSSYIYKVLKQVHPDTGISNRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 135
[Close]
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B_NEUCR (Histone H2B OS=Neurospora crassa GN=hh2b PE=1 SV=4)

HSP 1 Score: 145.206 bits (365), Expect = 1.464e-34
Identity = 70/90 (77.78%), Postives = 83/90 (92.22%), Query Frame = 3 
Query:  198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   46 ETYSSYIYKVLKQVHPDTGISNRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 135
[Close]
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B_NEOFI (Histone H2B OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=htb1 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.464e-34
Identity = 70/90 (77.78%), Postives = 83/90 (92.22%), Query Frame = 3 
Query:  198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   49 ETYSSYIYKVLKQVHPDTGISTRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 138
[Close]
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B_MAGGR (Histone H2B OS=Magnaporthe grisea GN=HTB1 PE=2 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 1.464e-34
Identity = 70/90 (77.78%), Postives = 83/90 (92.22%), Query Frame = 3 
Query:  198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   46 ETYSSYIYKVLKQVHPDTGISNRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 135
[Close]
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B_EMENI (Histone H2B OS=Emericella nidulans GN=htbA PE=3 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 1.464e-34
Identity = 70/90 (77.78%), Postives = 83/90 (92.22%), Query Frame = 3 
Query:  198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            ETY  YI+KVLKQVHPD GIS++AM I+NSF+NDIFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS
Sbjct:   49 ETYSSYIYKVLKQVHPDTGISTRAMSILNSFVNDIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 138
The following BLAST results are available for this feature:
BLAST of CX288621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B1_RAT5.033e-3581.11Histone H2B type 1 OS=Rattus norvegicus PE=1 SV=2[more]
H2BE1_PSAMI6.573e-3578.89Histone H2B.1, embryonic OS=Psammechinus miliaris ... [more]
H2B_EUPCR8.585e-3576.67Histone H2B OS=Euplotes crassus GN=H2B1 PE=3 SV=1[more]
H2B_GIBZE1.121e-3477.78Histone H2B OS=Gibberella zeae GN=HTB1 PE=3 SV=3[more]
H2B_ROSNE1.464e-3477.78Histone H2B OS=Rosellinia necatrix GN=hh2b PE=3 SV... [more]
H2B_PODAN1.464e-3477.78Histone H2B OS=Podospora anserina GN=HTB1 PE=3 SV=... [more]
H2B_NEUCR1.464e-3477.78Histone H2B OS=Neurospora crassa GN=hh2b PE=1 SV=4[more]
H2B_NEOFI1.464e-3477.78Histone H2B OS=Neosartorya fischeri (strain ATCC 1... [more]
H2B_MAGGR1.464e-3477.78Histone H2B OS=Magnaporthe grisea GN=HTB1 PE=2 SV=... [more]
H2B_EMENI1.464e-3477.78Histone H2B OS=Emericella nidulans GN=htbA PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionC02002E04SK IF1 Citrus clementina cDNA clone C02002E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288621 ID=CX288621; Name=CX288621; organism=Citrus clementina; type=EST; length=489bp
ATTCAGAAGAATCTTCTCACGCCCTTCAGTTTTTCTCGTCAAAAGGAACG
ATGGCGCCGAAAGCCGAGAAGAAGCCAGCGGAGAAAAAGCCGGTAGCCGA
GAAAGCCCCAGCCGAGAAGAGGCCGAAAGCCGAGAAGAAGATCTCGAAAG
ATGGCGGCGGCGTCGAGAAAAAGAAGAGGAAGTTGAAGAAGAATGTGGAG
ACGTACAAGATCTACATTTTCAAGGTCCTGAAGCAGGTTCATCCCGATAT
CGGTATCTCCAGCAAGGCCATGGGCATCATGAACAGTTTCATCAACGATA
TCTTCGAGAAATTAGCCCAAGAGGCGTCTCGTCTCGCTAGGTACAACAAG
AAGCCGACGATCACGTCGAGGGAGATCCAGACCGCCGTGAGATTGGTCTT
GCCCGGTGAATTGGCCAAGCACGCCGTGTCGGAGGGGACCAAGGCCGTTA
CCAAGTTCACGAGCTCTTGATTTTGTGCAATTTTTTGTC
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