CX288621

Overview
NameCX288621
Unique NameCX288621
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length489
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10458 contig Ccv1_Contig10458:21..509. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2BS3_PARAN (Histone H2B.3, sperm OS=Parechinus angulosus PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 1.619e-33
Identity = 67/90 (74.44%), Postives = 82/90 (91.11%), Query Frame = 3
Query:  198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            E+Y IYI+KVLKQVHPD GISS+AM +MNSF+ND+FE++A EASRL   N++ T++SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   59 ESYGIYIYKVLKQVHPDTGISSRAMSVMNSFVNDVFERIASEASRLTSANRRSTVSSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 148          
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B2_KLULA (Histone H2B.2 OS=Kluyveromyces lactis GN=HTB1 PE=3 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 2.114e-33
Identity = 67/90 (74.44%), Postives = 81/90 (90.00%), Query Frame = 3
Query:  198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            ETY  YI+KVLKQ HPD GIS K+M I+NSF+NDIFE++A E+S+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK++SS
Sbjct:   40 ETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATESSKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSS 129          
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B1_KLULA (Histone H2B.1 OS=Kluyveromyces lactis GN=HTB1 PE=3 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 2.114e-33
Identity = 67/90 (74.44%), Postives = 81/90 (90.00%), Query Frame = 3
Query:  198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            ETY  YI+KVLKQ HPD GIS K+M I+NSF+NDIFE++A E+S+LA YNKK TI++REIQTAVRL+LPGELAKHAVSEGT+AVTK++SS
Sbjct:   40 ETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATESSKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSS 129          
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2BS2_PARAN (Histone H2B.2, sperm OS=Parechinus angulosus PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 2.762e-33
Identity = 67/90 (74.44%), Postives = 82/90 (91.11%), Query Frame = 3
Query:  198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            E+Y IYI+KVLKQVHPD GISS+AM +MNSF+ND+FE++A EASRL   N++ T++SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   54 ESYGIYIYKVLKQVHPDTGISSRAMSVMNSFVNDVFERIAGEASRLTSANRRSTVSSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 143          
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B_CRYNE (Histone H2B OS=Cryptococcus neoformans GN=HTB1 PE=3 SV=3)

HSP 1 Score: 139.813 bits (351), Expect = 6.152e-33
Identity = 66/91 (72.53%), Postives = 83/91 (91.21%), Query Frame = 3
Query:  195 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            VE+Y  YI+KVLKQVHPD GIS+KAM I+NSF++DIFE++A EAS+LA YN + TI+SREIQT+VRL+LPGEL+KHA+SEGTKAVTK++SS
Sbjct:   48 VESYSSYIYKVLKQVHPDTGISNKAMAILNSFVSDIFERIATEASKLASYNHRSTISSREIQTSVRLILPGELSKHAISEGTKAVTKYSSS 138          
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2BS2_STRPU (Histone H2B.2, sperm OS=Strongylocentrotus purpuratus PE=2 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 6.152e-33
Identity = 68/90 (75.56%), Postives = 81/90 (90.00%), Query Frame = 3
Query:  198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            E+Y IYI+KVLKQVHPD GISS+ M +MNSF+NDIF ++A EASRL R N++ TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   54 ESYGIYIYKVLKQVHPDTGISSRGMSVMNSFVNDIFGRIAGEASRLTRANRRSTISSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 143          
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B2_PICGU (Histone H2B.2 OS=Pichia guilliermondii GN=HTB2 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 8.035e-33
Identity = 66/90 (73.33%), Postives = 79/90 (87.78%), Query Frame = 3
Query:  198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            ETY  YI+KVLKQ HPD GIS KAM IMNSF+NDIFE++A EAS+LA YNKK TI++REIQTAVRL+LPGELAKHAVSE T+ +TK++S+
Sbjct:   38 ETYSSYIYKVLKQTHPDTGISQKAMSIMNSFVNDIFERVASEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEATRTITKYSSA 127          
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B1_PICGU (Histone H2B.1 OS=Pichia guilliermondii GN=HTB1 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 8.035e-33
Identity = 66/90 (73.33%), Postives = 79/90 (87.78%), Query Frame = 3
Query:  198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            ETY  YI+KVLKQ HPD GIS KAM IMNSF+NDIFE++A EAS+LA YNKK TI++REIQTAVRL+LPGELAKHAVSE T+ +TK++S+
Sbjct:   38 ETYSSYIYKVLKQTHPDTGISQKAMSIMNSFVNDIFERVASEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEATRTITKYSSA 127          
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2BS2_PSAMI (Histone H2B.2, sperm OS=Psammechinus miliaris PE=1 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 1.371e-32
Identity = 66/90 (73.33%), Postives = 81/90 (90.00%), Query Frame = 3
Query:  198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            E+Y IYI+KVLKQVHPD GISS+ M +MNSF+ND+FE++A EASRL   N++ TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T++
Sbjct:   52 ESYGIYIYKVLKQVHPDTGISSRGMSVMNSFVNDVFERIAGEASRLTSANRRSTISSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTTA 141          
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2BS2_LYTPI (Histone H2B.2, sperm OS=Lytechinus pictus PE=2 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 5.208e-32
Identity = 65/90 (72.22%), Postives = 81/90 (90.00%), Query Frame = 3
Query:  198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            E+Y  YI++VLKQVHPD GISS+ M +MNSF+ND+FE++A EASRL + N++ TI+SREIQTAVRL+LPGELAKHAVSEGTKAVTK+T+S
Sbjct:   53 ESYGSYIYRVLKQVHPDTGISSRGMSVMNSFVNDVFERIAGEASRLCQANRRRTISSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTTS 142          
The following BLAST results are available for this feature:
BLAST of CX288621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2BS3_PARAN1.619e-3374.44Histone H2B.3, sperm OS=Parechinus angulosus PE=1 ... [more]
H2B2_KLULA2.114e-3374.44Histone H2B.2 OS=Kluyveromyces lactis GN=HTB1 PE=3... [more]
H2B1_KLULA2.114e-3374.44Histone H2B.1 OS=Kluyveromyces lactis GN=HTB1 PE=3... [more]
H2BS2_PARAN2.762e-3374.44Histone H2B.2, sperm OS=Parechinus angulosus PE=1 ... [more]
H2B_CRYNE6.152e-3372.53Histone H2B OS=Cryptococcus neoformans GN=HTB1 PE=... [more]
H2BS2_STRPU6.152e-3375.56Histone H2B.2, sperm OS=Strongylocentrotus purpura... [more]
H2B2_PICGU8.035e-3373.33Histone H2B.2 OS=Pichia guilliermondii GN=HTB2 PE=... [more]
H2B1_PICGU8.035e-3373.33Histone H2B.1 OS=Pichia guilliermondii GN=HTB1 PE=... [more]
H2BS2_PSAMI1.371e-3273.33Histone H2B.2, sperm OS=Psammechinus miliaris PE=1... [more]
H2BS2_LYTPI5.208e-3272.22Histone H2B.2, sperm OS=Lytechinus pictus PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC02002E04SK IF1 Citrus clementina cDNA clone C02002E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288621 ID=CX288621; Name=CX288621; organism=Citrus clementina; type=EST; length=489bp
ATTCAGAAGAATCTTCTCACGCCCTTCAGTTTTTCTCGTCAAAAGGAACG
ATGGCGCCGAAAGCCGAGAAGAAGCCAGCGGAGAAAAAGCCGGTAGCCGA
GAAAGCCCCAGCCGAGAAGAGGCCGAAAGCCGAGAAGAAGATCTCGAAAG
ATGGCGGCGGCGTCGAGAAAAAGAAGAGGAAGTTGAAGAAGAATGTGGAG
ACGTACAAGATCTACATTTTCAAGGTCCTGAAGCAGGTTCATCCCGATAT
CGGTATCTCCAGCAAGGCCATGGGCATCATGAACAGTTTCATCAACGATA
TCTTCGAGAAATTAGCCCAAGAGGCGTCTCGTCTCGCTAGGTACAACAAG
AAGCCGACGATCACGTCGAGGGAGATCCAGACCGCCGTGAGATTGGTCTT
GCCCGGTGAATTGGCCAAGCACGCCGTGTCGGAGGGGACCAAGGCCGTTA
CCAAGTTCACGAGCTCTTGATTTTGTGCAATTTTTTGTC
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