CX288621
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B_YARLI (Histone H2B OS=Yarrowia lipolytica GN=HTB1 PE=3 SV=3) HSP 1 Score: 135.191 bits (339), Expect = 1.515e-31 Identity = 64/89 (71.91%), Postives = 77/89 (86.52%), Query Frame = 3 Query: 198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 464 ETY YI+KVLKQ HPD GIS++AM IMNSF+NDIFE++A EAS+LA Y KK TITSREIQTAVRL+LPGELAKHA +GT+AV K+++ Sbjct: 48 ETYSSYIYKVLKQTHPDTGISTRAMSIMNSFVNDIFERVATEASKLATYTKKSTITSREIQTAVRLILPGELAKHATGDGTRAVAKYST 136
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B_PHANO (Histone H2B OS=Phaeosphaeria nodorum GN=HTB1 PE=3 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 1.515e-31 Identity = 68/92 (73.91%), Postives = 81/92 (88.04%), Query Frame = 3 Query: 198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFIND--IFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467 ETY YI+KVLKQVHPD GIS++AM I+NSF+ IFE++A EAS+LA YNKK TI+SREIQT+VRL+LPGELAKHAVSEGTKAVTK++SS Sbjct: 47 ETYSSYIYKVLKQVHPDTGISNRAMSILNSFVTTTHIFERVATEASKLAAYNKKSTISSREIQTSVRLILPGELAKHAVSEGTKAVTKYSSS 138
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B2_ARATH (Histone H2B.2 OS=Arabidopsis thaliana GN=At1g08170 PE=2 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 6.588e-27 Identity = 53/87 (60.92%), Postives = 77/87 (88.51%), Query Frame = 3 Query: 198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKF 458 + Y+ Y++KV+KQVHPD+GI+SKAM ++N F+ D+FE++AQEA+RL+ Y K+ T++SREI+ AVRLVLPGEL++HAV+EG+KAV+ F Sbjct: 149 DEYRRYVYKVMKQVHPDLGITSKAMTVVNMFMGDMFERIAQEAARLSDYTKRRTLSSREIEAAVRLVLPGELSRHAVAEGSKAVSNF 235
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B2C_HUMAN (Putative histone H2B type 2-C OS=Homo sapiens GN=HIST2H2BC PE=5 SV=3) HSP 1 Score: 92.0485 bits (227), Expect = 2.885e-23 Identity = 43/58 (74.14%), Postives = 51/58 (87.93%), Query Frame = 3 Query: 198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSR 371 E+Y IY++KVLK+VHPD GI KAMGIMNSF+NDIFE++A EASRLA YNK+ TITSR Sbjct: 36 ESYSIYVYKVLKRVHPDTGIWCKAMGIMNSFLNDIFERIAGEASRLAHYNKRSTITSR 93 HSP 2 Score: 37.3502 bits (85), Expect = 2.885e-23 Identity = 14/22 (63.64%), Postives = 16/22 (72.73%), Query Frame = 1 Query: 400 CPVNWPSTPCRRGPRPLPSSRA 465 CP +WPSTPC R PR PS+ A Sbjct: 103 CPASWPSTPCPRAPRRSPSTPA 124
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B2D_HUMAN (Putative histone H2B type 2-D OS=Homo sapiens GN=HIST2H2BD PE=5 SV=3) HSP 1 Score: 92.0485 bits (227), Expect = 2.903e-23 Identity = 43/58 (74.14%), Postives = 51/58 (87.93%), Query Frame = 3 Query: 198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSR 371 E+Y IY++KVLK+VHPD GI KAMGIMNSF+NDIFE++A EASRLA YNK+ TITSR Sbjct: 36 ESYSIYVYKVLKRVHPDTGIWCKAMGIMNSFLNDIFERIAGEASRLAHYNKRSTITSR 93 HSP 2 Score: 37.3502 bits (85), Expect = 2.903e-23 Identity = 14/22 (63.64%), Postives = 16/22 (72.73%), Query Frame = 1 Query: 400 CPVNWPSTPCRRGPRPLPSSRA 465 CP +WPSTPC R PR PS+ A Sbjct: 103 CPASWPSTPCPRAPRRSPSTPA 124
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B_TRYCR (Histone H2B OS=Trypanosoma cruzi PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 2.681e-20 Identity = 46/88 (52.27%), Postives = 69/88 (78.41%), Query Frame = 3 Query: 201 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 464 T+ +YI + LK ++ + +S + M I+NSF+ND+FE++A EA+ + R NKK T+ +RE+QTAVRLVLP +LAKHA++EGTKAV+ +S Sbjct: 25 TWNVYINRSLKSINNHMSMSGRTMKIVNSFVNDLFERIACEAATVVRVNKKRTLGARELQTAVRLVLPADLAKHAMAEGTKAVSHASS 112
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B_ENTIV (Histone H2B OS=Entamoeba invadens PE=2 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 2.681e-20 Identity = 48/103 (46.60%), Postives = 70/103 (67.96%), Query Frame = 3 Query: 147 KDGGGVEXXXXXXXXNVETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 455 K G E N ++Y +YI +VLK V PDIGI+ ++ +M+SF+ DIFE++A +AS L R +K T+T++EI+TA +L+L G+L KHAVSEG AV + Sbjct: 20 KKVGDEEAKKREVKKNFDSYALYISRVLKSVFPDIGITLPSISVMDSFVRDIFERIAMDASSLTRNYQKSTLTTKEIETATKLILKGDLNKHAVSEGQSAVKR 122
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B_LEIEN (Histone H2B OS=Leishmania enriettii PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 1.471e-18 Identity = 41/84 (48.81%), Postives = 66/84 (78.57%), Query Frame = 3 Query: 201 TYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVT 452 ++ +Y+ + LK ++ + +S + M I+NS++ND+ E++A EA+ + R +KK T+ +RE+QTAVRLVLP ELAKHA++EGTKAV+ Sbjct: 24 SWNVYVSRSLKAINSHMSMSGRTMKIVNSYVNDVMERIAMEAASIVRAHKKLTLGAREVQTAVRLVLPPELAKHAMAEGTKAVS 107
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2BV3_DICDI (Histone H2B.v3 OS=Dictyostelium discoideum GN=H2Bv3 PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 2.509e-18 Identity = 47/98 (47.96%), Postives = 66/98 (67.35%), Query Frame = 3 Query: 201 TYKIYIFKVLKQVHPDIG------------ISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKF 458 ++ YI K+LKQ+ P ISSKAM +MNSF++DIF+++A EAS LA+ K+ T+ SR+IQ AVR++L GELAKHA+ +G AV K+ Sbjct: 50 SFSTYIHKLLKQITPPTNAKSNEKGDRKFTISSKAMSVMNSFVHDIFDRIATEASGLAKKKKRQTLHSRDIQVAVRIILTGELAKHAILQGMTAVNKY 147
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B_LILLO (Histone H2B.1 OS=Lilium longiflorum PE=1 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 3.277e-18 Identity = 45/87 (51.72%), Postives = 67/87 (77.01%), Query Frame = 3 Query: 204 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 464 Y++YI +VL QV P++GISSK+M IMN+F+ F+ +A+EAS LA+Y+KK TIT +E++ AV+LVLP +L ++A +G +AV F S Sbjct: 54 YRVYIRRVLTQVRPELGISSKSMLIMNNFVVHNFQNIAKEASILAQYSKKKTITVKELKAAVKLVLPHQLLEYADRDGDRAVHNFES 140 The following BLAST results are available for this feature:
BLAST of CX288621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 205
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288621 ID=CX288621; Name=CX288621; organism=Citrus clementina; type=EST; length=489bpback to top |