CX288621

Overview
NameCX288621
Unique NameCX288621
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length489
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10458 contig Ccv1_Contig10458:21..509. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2BFM_HUMAN (Histone H2B type F-M OS=Homo sapiens GN=H2BFM PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.181e-17
Identity = 43/96 (44.79%), Postives = 68/96 (70.83%), Query Frame = 3
Query:  198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS*FCAIF 485
            +++  Y  +VLKQVH  + +S +A+ +M+S I+DI +++A EA +LA Y K+ TITSR+IQ AVRL+LPG++ K A ++GT A  + +    CAI+
Sbjct:  161 DSFTPYFPRVLKQVHQGLSLSQEAVSVMDSMIHDILDRIATEAGQLAHYTKRVTITSRDIQMAVRLLLPGKMGKLAEAQGTNAALRTS---LCAIW 253          
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2BWT_HUMAN (Histone H2B type W-T OS=Homo sapiens GN=H2BFWT PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.054e-16
Identity = 41/86 (47.67%), Postives = 63/86 (73.26%), Query Frame = 3
Query:  198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTK 455
            +++  Y  +VLKQVH  + +S +A+ +M+S ++DI +++A EA RLAR  K+ TIT+ E + AVRL+LPG++ K A SEGTKAV +
Sbjct:   79 DSFATYFRRVLKQVHQGLSLSREAVSVMDSLVHDILDRIATEAGRLARSTKRQTITAWETRMAVRLLLPGQMGKLAESEGTKAVLR 164          
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2BV_BOVIN (Histone H2B subacrosomal variant OS=Bos taurus GN=SUBH2BV PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 5.232e-16
Identity = 41/91 (45.05%), Postives = 64/91 (70.33%), Query Frame = 3
Query:  195 VETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            +  Y +YI +VLK+V P  GISS+ + I+N+ IND+FE+++ EA  L  Y K+ T+T  +I+ AV L+LP +LAK+AV+ G +AV ++  S
Sbjct:   32 LRNYSLYINRVLKEVVPQKGISSRTIDIINTMINDMFERISTEACNLMYYRKRCTLTPEDIEKAVYLLLPEKLAKYAVAFGKEAVQRYVRS 122          
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2BV_MOUSE (Histone H2B subacrosomal variant OS=Mus musculus GN=Subh2bv PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 9.868e-15
Identity = 44/88 (50.00%), Postives = 61/88 (69.32%), Query Frame = 3
Query:  204 YKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            Y +YI +VLK+V P+ GISS ++ IMN  INDIFE++A EA +     K+ T+T  +IQ AV L+LP +LA  AV+ G+KAV +F  S
Sbjct:   36 YSLYINRVLKEVVPNRGISSYSVDIMNILINDIFERIATEACQQMFLRKRCTLTPGDIQQAVHLLLPKKLATLAVTFGSKAVHRFIHS 123          
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2BV1_DICDI (Histone H2B.v1 OS=Dictyostelium discoideum GN=H2Bv1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.861e-13
Identity = 37/86 (43.02%), Postives = 57/86 (66.28%), Query Frame = 3
Query:  210 IYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            IYI K++KQ++P   I  K++ I+ S I D    +  EA  L + + K T+++R++QT+VRL   GE+++HAVSEG K VT F S+
Sbjct:   18 IYIKKLIKQINPACRIQVKSVQILTSLIRDTTISIMNEAFHLVQLSNKRTLSARDVQTSVRLCTVGEISRHAVSEGVKRVTNFNSA 103          
The following BLAST results are available for this feature:
BLAST of CX288621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2BFM_HUMAN6.181e-1744.79Histone H2B type F-M OS=Homo sapiens GN=H2BFM PE=2... [more]
H2BWT_HUMAN1.054e-1647.67Histone H2B type W-T OS=Homo sapiens GN=H2BFWT PE=... [more]
H2BV_BOVIN5.232e-1645.05Histone H2B subacrosomal variant OS=Bos taurus GN=... [more]
H2BV_MOUSE9.868e-1550.00Histone H2B subacrosomal variant OS=Mus musculus G... [more]
H2BV1_DICDI1.861e-1343.02Histone H2B.v1 OS=Dictyostelium discoideum GN=H2Bv... [more]

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Properties
Property NameValue
Genbank descriptionC02002E04SK IF1 Citrus clementina cDNA clone C02002E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288621 ID=CX288621; Name=CX288621; organism=Citrus clementina; type=EST; length=489bp
ATTCAGAAGAATCTTCTCACGCCCTTCAGTTTTTCTCGTCAAAAGGAACG
ATGGCGCCGAAAGCCGAGAAGAAGCCAGCGGAGAAAAAGCCGGTAGCCGA
GAAAGCCCCAGCCGAGAAGAGGCCGAAAGCCGAGAAGAAGATCTCGAAAG
ATGGCGGCGGCGTCGAGAAAAAGAAGAGGAAGTTGAAGAAGAATGTGGAG
ACGTACAAGATCTACATTTTCAAGGTCCTGAAGCAGGTTCATCCCGATAT
CGGTATCTCCAGCAAGGCCATGGGCATCATGAACAGTTTCATCAACGATA
TCTTCGAGAAATTAGCCCAAGAGGCGTCTCGTCTCGCTAGGTACAACAAG
AAGCCGACGATCACGTCGAGGGAGATCCAGACCGCCGTGAGATTGGTCTT
GCCCGGTGAATTGGCCAAGCACGCCGTGTCGGAGGGGACCAAGGCCGTTA
CCAAGTTCACGAGCTCTTGATTTTGTGCAATTTTTTGTC
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