CX288621

Overview
NameCX288621
Unique NameCX288621
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length489
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10458 contig Ccv1_Contig10458:21..509. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B1O_HUMAN (Histone H2B type 1-O OS=Homo sapiens GN=HIST1H2BO PE=1 SV=3)

HSP 1 Score: 155.221 bits (391), Expect = 1.415e-37
Identity = 76/90 (84.44%), Postives = 85/90 (94.44%), Query Frame = 3 
Query:  198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B1B_HUMAN (Histone H2B type 1-B OS=Homo sapiens GN=HIST1H2BB PE=1 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 1.415e-37
Identity = 76/90 (84.44%), Postives = 85/90 (94.44%), Query Frame = 3 
Query:  198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B3_DANRE (Histone H2B 3 OS=Danio rerio GN=hist2h2l PE=2 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 1.848e-37
Identity = 76/90 (84.44%), Postives = 85/90 (94.44%), Query Frame = 3 
Query:  198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYAIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B2F_HUMAN (Histone H2B type 2-F OS=Homo sapiens GN=HIST2H2BF PE=1 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 1.848e-37
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = 3 
Query:  198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B2B_MOUSE (Histone H2B type 2-B OS=Mus musculus GN=Hist2h2bb PE=1 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 1.848e-37
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = 3 
Query:  198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B1_PONAB (Histone H2B type 1 OS=Pongo abelii PE=2 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 1.848e-37
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = 3 
Query:  198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B1_DANRE (Histone H2B 1/2 OS=Danio rerio GN=zgc:112234 PE=2 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 1.848e-37
Identity = 76/90 (84.44%), Postives = 85/90 (94.44%), Query Frame = 3 
Query:  198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            E+Y IY++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   34 ESYAIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 123
[Close]
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B1_BOVIN (Histone H2B type 1 OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 1.848e-37
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = 3 
Query:  198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B1N_HUMAN (Histone H2B type 1-N OS=Homo sapiens GN=HIST1H2BN PE=1 SV=3)

HSP 1 Score: 154.836 bits (390), Expect = 1.848e-37
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = 3 
Query:  198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX288621 vs. ExPASy Swiss-Prot
Match: H2B1M_MOUSE (Histone H2B type 1-M OS=Mus musculus GN=Hist1h2bm PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 1.848e-37
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = 3 
Query:  198 ETYKIYIFKVLKQVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 467
            E+Y +Y++KVLKQVHPD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   36 ESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
The following BLAST results are available for this feature:
BLAST of CX288621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
H2B1O_HUMAN1.415e-3784.44Histone H2B type 1-O OS=Homo sapiens GN=HIST1H2BO ... [more]
H2B1B_HUMAN1.415e-3784.44Histone H2B type 1-B OS=Homo sapiens GN=HIST1H2BB ... [more]
H2B3_DANRE1.848e-3784.44Histone H2B 3 OS=Danio rerio GN=hist2h2l PE=2 SV=3[more]
H2B2F_HUMAN1.848e-3783.33Histone H2B type 2-F OS=Homo sapiens GN=HIST2H2BF ... [more]
H2B2B_MOUSE1.848e-3783.33Histone H2B type 2-B OS=Mus musculus GN=Hist2h2bb ... [more]
H2B1_PONAB1.848e-3783.33Histone H2B type 1 OS=Pongo abelii PE=2 SV=3[more]
H2B1_DANRE1.848e-3784.44Histone H2B 1/2 OS=Danio rerio GN=zgc:112234 PE=2 ... [more]
H2B1_BOVIN1.848e-3783.33Histone H2B type 1 OS=Bos taurus PE=1 SV=2[more]
H2B1N_HUMAN1.848e-3783.33Histone H2B type 1-N OS=Homo sapiens GN=HIST1H2BN ... [more]
H2B1M_MOUSE1.848e-3783.33Histone H2B type 1-M OS=Mus musculus GN=Hist1h2bm ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02002E04SK IF1 Citrus clementina cDNA clone C02002E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288621 ID=CX288621; Name=CX288621; organism=Citrus clementina; type=EST; length=489bp
ATTCAGAAGAATCTTCTCACGCCCTTCAGTTTTTCTCGTCAAAAGGAACG
ATGGCGCCGAAAGCCGAGAAGAAGCCAGCGGAGAAAAAGCCGGTAGCCGA
GAAAGCCCCAGCCGAGAAGAGGCCGAAAGCCGAGAAGAAGATCTCGAAAG
ATGGCGGCGGCGTCGAGAAAAAGAAGAGGAAGTTGAAGAAGAATGTGGAG
ACGTACAAGATCTACATTTTCAAGGTCCTGAAGCAGGTTCATCCCGATAT
CGGTATCTCCAGCAAGGCCATGGGCATCATGAACAGTTTCATCAACGATA
TCTTCGAGAAATTAGCCCAAGAGGCGTCTCGTCTCGCTAGGTACAACAAG
AAGCCGACGATCACGTCGAGGGAGATCCAGACCGCCGTGAGATTGGTCTT
GCCCGGTGAATTGGCCAAGCACGCCGTGTCGGAGGGGACCAAGGCCGTTA
CCAAGTTCACGAGCTCTTGATTTTGTGCAATTTTTTGTC
back to top