CX288629

Overview
NameCX288629
Unique NameCX288629
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length244
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15214 contig Ccv1_Contig15214:226..469. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX288629 vs. ExPASy Swiss-Prot
Match: NACA_CRYNE (Nascent polypeptide-associated complex subunit alpha OS=Cryptococcus neoformans GN=EGD2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.965e-13
Identity = 32/60 (53.33%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:   64 AMLKLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQLQTQ 243
            A+  LG+K + G+ RVT+++++N+L V+S P+V+KSP SD YIVFGEAK+ED +S  Q Q
Sbjct:   33 ALEGLGLKRVQGIQRVTLRRARNVLLVVSSPEVYKSPGSDCYIVFGEAKVEDPNSAAQLQ 92
[Close]
BLAST of CX288629 vs. ExPASy Swiss-Prot
Match: NACA_PICGU (Nascent polypeptide-associated complex subunit alpha OS=Pichia guilliermondii GN=EGD2 PE=3 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.737e-11
Identity = 27/54 (50.00%), Postives = 44/54 (81.48%), Query Frame = 1 
Query:   73 KLGMKPIPGVSRVTVKKSKNILFVISKPDVFKSPTSDTYIVFGEAKIEDLSSQL 234
            KL +KP+PG++RVT K+  N+++ I +PDVFKS  + TY+VFGEAK++D++ ++
Sbjct:   32 KLHLKPVPGITRVTFKQKGNLIYAIEQPDVFKS-AAGTYVVFGEAKVDDMNKRI 84
The following BLAST results are available for this feature:
BLAST of CX288629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
NACA_CRYNE7.965e-1353.33Nascent polypeptide-associated complex subunit alp... [more]
NACA_PICGU9.737e-1150.00Nascent polypeptide-associated complex subunit alp... [more]

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Properties
Property NameValue
Genbank descriptionC02002F01SK IF1 Citrus clementina cDNA clone C02002F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288629 ID=CX288629; Name=CX288629; organism=Citrus clementina; type=EST; length=244bp
GAAGGGAAAGGAGATGGAAGTGGTCGCTCAAAACAGAGCAGGAGTGAAAA
GAAGAGTCGGAAAGCAATGTTGAAACTTGGAATGAAGCCAATCCCTGGTG
TCAGTCGAGTTACAGTTAAAAAGAGCAAAAATATTTTGTTTGTTATCTCC
AAACCAGATGTTTTCAAGAGTCCTACATCTGACACATACATTGTCTTTGG
GGAAGCAAAGATCGAGGATCTGAGTTCACAACTGCAAACTCAGG
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