CX288634

Overview
NameCX288634
Unique NameCX288634
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP2_BACC1 (Prolyl-tRNA synthetase 2 OS=Bacillus cereus (strain ATCC 10987) GN=proS2 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.334e-18
Identity = 39/112 (34.82%), Postives = 58/112 (51.79%), Query Frame = 2
Query:  188 NYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRK-MILAPWCDEEEVEKDVK 520
            N +PGWK++ +EMKG+P+ +E+GPKD+  +QV  VRRD   K  + M                SLF  AK  RD     V  ++E  +   +++  I A WC E   E+ +K
Sbjct:  327 NKTPGWKFNEYEMKGIPIRLEVGPKDIEKNQVVLVRRDTKEKEFIAMEQLEERIPALLEEIHNSLFNKAKVFRDENTYSVTKFEEMKKVADEKQGFIKAMWCGELACEEKLK 438          

HSP 2 Score: 40.817 bits (94), Expect = 5.334e-18
Identity = 15/27 (55.56%), Postives = 23/27 (85.19%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPV 84
            ++MVH D+ GL++PPKVA VQV+ +P+
Sbjct:  271 LIMVHSDNNGLVMPPKVAPVQVVIVPI 297          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_UNCMA (Prolyl-tRNA synthetase OS=Uncultured methanogenic archaeon RC-I GN=proS PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.936e-18
Identity = 42/118 (35.59%), Postives = 56/118 (47.46%), Query Frame = 2
Query:  197 PGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEE----EVEKDVKARTKGE 538
            PG KY  WEMKG P  IEIGP+D+ N+ V  VRRD G K  +PM                 L  AA+    A ++  +T DE  + + +      PWC E+    E+E  V  +  GE
Sbjct:  332 PGAKYYKWEMKGTPFRIEIGPRDIKNNSVMLVRRD-GKKESIPMDGLPETVRNKLFEFQTDLLNAARDSMLARVKACETLDEAKQQI-ENGWATMPWCGEKACGLEMENAVNCKLLGE 447          

HSP 2 Score: 43.8986 bits (102), Expect = 6.936e-18
Identity = 20/48 (41.67%), Postives = 31/48 (64.58%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKDADTQGIFDACTATVEKL 147
            ++ +HGD+KGL+LPP  +  QV+ IP+ +K  D  G+ +AC    E L
Sbjct:  270 VIGIHGDNKGLVLPPNASQTQVVIIPIIFK-KDDGGVKEACQKVKELL 316          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_PORGI (Prolyl-tRNA synthetase OS=Porphyromonas gingivalis GN=proS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.171e-17
Identity = 38/125 (30.40%), Postives = 59/125 (47.20%), Query Frame = 2
Query:  158 GIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTK 532
            GI    D  DN  PGWK++ +E+KG+P+ + +G +DL N+ +   RRD   K  + +                ++F  A   R      V +++EF E +     ILA W    E E+ +KA TK
Sbjct:  335 GISVKYDNSDNKKPGWKFAEYELKGIPVRLAMGARDLENNTIEIARRDTLTKETVGLDGIEETVATLLDDIQKNIFQKALNYRKEHTITVDSYEEFKEKIEDGGFILAHWDGTSETEERIKAETK 459          

HSP 2 Score: 39.2762 bits (90), Expect = 1.171e-17
Identity = 18/48 (37.50%), Postives = 27/48 (56.25%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKDADTQGIFDACTATVEKL 147
            ++M H DD GL+LPPK+A  QV+ IP+   +     I +  T   + L
Sbjct:  284 LIMSHSDDNGLVLPPKLAPYQVVIIPIYRNEEQLAQIDEKATQITQAL 331          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_AZOPC (Prolyl-tRNA synthetase OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=proS PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.523e-17
Identity = 35/124 (28.23%), Postives = 58/124 (46.77%), Query Frame = 2
Query:  161 IRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTK 532
            I    D  DN  PGWK++ +E+KG+P+ + +G +DL N  +   RRD   K  + + +              +++  A   R A    V  +DEF E + +   I+A W    + E+ +K  TK
Sbjct:  336 INVKYDNTDNKKPGWKFAEYELKGIPIRLTLGTRDLENGTIEVSRRDTLTKETISINNITDYANNLLNDIQQNIYQKALDYRSANTVYVDNYDEFKERIEEGGFIMAHWDGTAKTEEQIKKETK 459          

HSP 2 Score: 40.0466 bits (92), Expect = 1.523e-17
Identity = 17/42 (40.48%), Postives = 26/42 (61.90%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKDADTQGIFDACT 129
            ++M+H DD GL+LPPK+A  Q++ IPV       + I +  T
Sbjct:  284 LIMMHSDDNGLVLPPKLAPCQIVIIPVSKDRTSLEDINEKAT 325          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_IGNH4 (Prolyl-tRNA synthetase OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=proS PE=3 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 1.524e-17
Identity = 34/115 (29.57%), Postives = 55/115 (47.83%), Query Frame = 2
Query:  158 GIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEE 502
            G R   D  D  +PG KY  WE+KGVP  IEIG K++  D++   RRD   ++ +  G               ++   A     + I+ V++ +E  E + +R ++  PWC  +E
Sbjct:  319 GWRTVLDDRDELTPGAKYYEWELKGVPFRIEIGKKEVEGDELTVARRDLKKRVKVKKGEIHQRLKEMSDDMLNNMRERAWSFMKSRIKRVRSLEEAKELVEKRYVVELPWCGSKE 433          

HSP 2 Score: 48.521 bits (114), Expect = 1.524e-17
Identity = 19/35 (54.29%), Postives = 29/35 (82.86%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKDADTQ 108
            +V VHGD++GL+LPP+VA VQV+ +P+P K+ + Q
Sbjct:  267 LVAVHGDERGLVLPPEVAPVQVVIVPIPQKEEEQQ 301          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_CHLP8 (Prolyl-tRNA synthetase OS=Chlorobaculum parvum (strain NCIB 8327) GN=proS PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 1.981e-17
Identity = 42/143 (29.37%), Postives = 70/143 (48.95%), Query Frame = 2
Query:  107 KEFLMHALQLLKN*CEAGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPM-GSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTK 532
            +E   HA  + K   + GI    D  +N SPGWK++ +E++G+P+ IE+GP+D+A  +    RRD   K ++ +                 +L+  A Q R        TW+EF +A  ++  ++A W   +E E  +K  TK
Sbjct:  299 EEVRAHARFIAKALNKHGISTFVDDSENNSPGWKFAEYELQGIPVRIELGPRDIAEGKCIVARRDTFEKTEVLLDAEMTENIEEILNNIQQNLYERALQFRQDNTVEATTWEEF-KAGVEKGFVIAHWDGTDETEALIKEETK 440          

HSP 2 Score: 42.3578 bits (98), Expect = 1.981e-17
Identity = 17/27 (62.96%), Postives = 23/27 (85.19%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPV 84
            ++M H DDKGL+LPPK+AS QV+ IP+
Sbjct:  267 LIMAHSDDKGLVLPPKLASRQVVIIPI 293          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_METTH (Prolyl-tRNA synthetase OS=Methanobacterium thermoautotrophicum GN=proS PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 4.352e-17
Identity = 45/143 (31.47%), Postives = 71/143 (49.65%), Query Frame = 2
Query:  110 EFLMHALQLLKN*CEA-GIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILA-PWCDEEEVEKDVKARTK 532
            E +M A + L++  EA G R + D  D    G KY  WEM+GVPL +EIGP+DL        RRD G K+   +                +L   A +R ++ I+  +T +E    + +++ I++  WC EEE   DV+ + +
Sbjct:  309 EEVMEACRELRSRLEAAGFRVHLDDRD-IRAGRKYYEWEMRGVPLRVEIGPRDLEKGAAVISRRDTGEKVTADLQGIEETLRELMKDILENLRTRAWERMESEIREAETLEEASRIVDEKRGIISFMWCGEEECGMDVEEKVR 450          

HSP 2 Score: 41.5874 bits (96), Expect = 4.352e-17
Identity = 17/41 (41.46%), Postives = 29/41 (70.73%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKDADTQGIFDAC 126
            ++ +HGD+ GL LPP VA+ QV+ +P+ +K A  + + +AC
Sbjct:  276 VIAIHGDESGLCLPPDVAAHQVVIVPIIFKKA-AEEVMEAC 315          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_BACTN (Prolyl-tRNA synthetase OS=Bacteroides thetaiotaomicron GN=proS PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.653e-17
Identity = 38/125 (30.40%), Postives = 62/125 (49.60%), Query Frame = 2
Query:  158 GIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTK 532
            GI    D  DN  PG+K++ +E+KGVP+ + +G +DL N+ +  +RRD   K  +                  +++  A   R++ I  V T++EF E + +   ILA W    E E+ +K  TK
Sbjct:  335 GISVKYDNADNKRPGFKFADYELKGVPVRLVMGGRDLENNTMEVMRRDTLEKETVTCDGIETYVQKLLEEIQANIYKKALDYRNSKITTVDTYEEFKEKIEEGGFILAHWDGTTETEEKIKEDTK 459          

HSP 2 Score: 40.0466 bits (92), Expect = 5.653e-17
Identity = 18/48 (37.50%), Postives = 27/48 (56.25%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKDADTQGIFDACTATVEKL 147
            ++M H DD GL+LPP +A +QV+ +P+   D   + I       V KL
Sbjct:  284 LIMTHSDDNGLVLPPHLAPIQVVIVPIYKNDEQLKQIDAKVEGIVAKL 331          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_FLAPJ (Prolyl-tRNA synthetase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=proS PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 1.242e-16
Identity = 41/113 (36.28%), Postives = 53/113 (46.90%), Query Frame = 2
Query:  197 PGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSLFVAAKQRRDACIQIVKTWDEFVEALGQR-KMILAPWCDEEEVEKDVKARTK 532
            PG+K++ WE+KGVP+ I IGPKDL N+     RRD   K   P                  LF  A Q RD  I  V  ++EF + L  +   I A W    E E+ +K  TK
Sbjct:  346 PGFKFAEWELKGVPVRIAIGPKDLENETFEIARRDTLTKEVKPKEGIVKYISDLLAQIQSDLFSKALQYRDTHITEVSDFEEFKKVLENKGGFISAHWDGTPETEEKIKELTK 458          

HSP 2 Score: 39.6614 bits (91), Expect = 1.242e-16
Identity = 16/37 (43.24%), Postives = 25/37 (67.57%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKDADTQGI 114
            +VM H DD GL+LPP +A +QV+ +P+   D + + I
Sbjct:  282 LVMTHSDDNGLVLPPNLAPIQVVIVPIFKTDEEFEKI 318          
BLAST of CX288634 vs. ExPASy Swiss-Prot
Match: SYP_AERPE (Prolyl-tRNA synthetase OS=Aeropyrum pernix GN=proS PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 1.615e-16
Identity = 36/136 (26.47%), Postives = 62/136 (45.59%), Query Frame = 2
Query:  152 EAGIRANSDFIDNYSPGWKYSHWEMKGVPLMIEIGPKDLANDQVRAVRRDNGAKIDLPMGSXXXXXXXXXXXXXXSL------FVAAKQRRDACIQIVKTWDEFVEALGQRKMILAPWCDEEEVEKDVKARTKGEM 541
            +AG+R + D  +   PG K+ +WE KGVP+ +EIG ++   D +   RRD   K ++P+G               S+      F   +  R   ++  + W E     G+R +   PWC  E    +++ R  G++
Sbjct:  322 KAGLRVHVDDREWERPGAKFYYWEAKGVPIRVEIGLREAEQDTLTIARRDTLEKTEVPLGEAGNRIRELMAQIESSMRERAKSFFGERLLRTESLEEARDWVE-----GRRGIAEIPWCGRESCGLEMEERVNGKV 452          

HSP 2 Score: 44.2838 bits (103), Expect = 1.615e-16
Identity = 17/36 (47.22%), Postives = 27/36 (75.00%), Query Frame = 1
Query:    4 MVMVHGDDKGLMLPPKVASVQVIDIPVPYKDADTQG 111
            ++ VHGDD+GL++PP VA +QV+ IP+   D + +G
Sbjct:  272 LIAVHGDDRGLVIPPSVAPIQVVVIPITPGDEEKRG 307          
The following BLAST results are available for this feature:
BLAST of CX288634 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
SYP2_BACC15.334e-1834.82Prolyl-tRNA synthetase 2 OS=Bacillus cereus (strai... [more]
SYP_UNCMA6.936e-1835.59Prolyl-tRNA synthetase OS=Uncultured methanogenic ... [more]
SYP_PORGI1.171e-1730.40Prolyl-tRNA synthetase OS=Porphyromonas gingivalis... [more]
SYP_AZOPC1.523e-1728.23Prolyl-tRNA synthetase OS=Azobacteroides pseudotri... [more]
SYP_IGNH41.524e-1729.57Prolyl-tRNA synthetase OS=Ignicoccus hospitalis (s... [more]
SYP_CHLP81.981e-1729.37Prolyl-tRNA synthetase OS=Chlorobaculum parvum (st... [more]
SYP_METTH4.352e-1731.47Prolyl-tRNA synthetase OS=Methanobacterium thermoa... [more]
SYP_BACTN5.653e-1730.40Prolyl-tRNA synthetase OS=Bacteroides thetaiotaomi... [more]
SYP_FLAPJ1.242e-1636.28Prolyl-tRNA synthetase OS=Flavobacterium psychroph... [more]
SYP_AERPE1.615e-1626.47Prolyl-tRNA synthetase OS=Aeropyrum pernix GN=proS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02002F06SK IF1 Citrus clementina cDNA clone C02002F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288634 ID=CX288634; Name=CX288634; organism=Citrus clementina; type=EST; length=547bp
GTCATGGTGATGGTTCATGGGGATGACAAGGGCTTGATGCTGCCACCCAA
AGTTGCATCTGTGCAAGTAATTGACATTCCTGTGCCTTACAAAGATGCTG
ATACTCAAGGAATTTTTGATGCATGCACTGCAACTGTTGAAAAATTAGTG
TGAGGCAGGTATTCGTGCTAATTCTGACTTTATAGACAACTACTCACCTG
GATGGAAGTACTCACACTGGGAAATGAAAGGTGTCCCCCTTATGATTGAA
ATAGGACCAAAAGACTTGGCAAATGATCAGGTACGTGCTGTTCGCCGTGA
CAACGGAGCAAAAATTGATCTGCCTATGGGCTCCTTGGTCGAGAGAGTAA
AAGAACTTCTTGAGGAGGTTCAAGAAAGCTTGTTTGTTGCTGCAAAACAA
AGACGAGATGCTTGCATTCAAATTGTAAAAACTTGGGATGAATTTGTGGA
GGCTCTTGGCCAAAGGAAAATGATCTTGGCTCCATGGTGTGATGAGGAGG
AGGTGGAGAAAGATGTGAAAGCACGTACCAAGGGTGAGATGGGAGCA
back to top