CX288644

Overview
NameCX288644
Unique NameCX288644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length566
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: TAOK3_HUMAN (Serine/threonine-protein kinase TAO3 OS=Homo sapiens GN=TAOK3 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 7.016e-14
Identity = 41/100 (41.00%), Postives = 60/100 (60.00%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKG-YGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPIPDSLSKDA-QDFIKQCVQVNPNDRPTAAQLLDHPFVKR 323
            GT +WMAPEVI   ++G Y    DIWSLG T +E+   + P   M  M+AL+ I +   P +  +   D+ + F+  C+Q  P +RPT+A+LL H FV+R
Sbjct:  180 GTPYWMAPEVILAMDEGQYDGKVDIWSLGITCIELAERKPPLFNMNAMSALYHIAQNDSPTLQSNEWTDSFRRFVDYCLQKIPQERPTSAELLRHDFVRR 279          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: SKM1_YEAST (Serine/threonine-protein kinase SKM1 OS=Saccharomyces cerevisiae GN=SKM1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.016e-14
Identity = 37/98 (37.76%), Postives = 57/98 (58.16%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFV 317
            GT +WMAPE++N K  GY    D+WSLG  ++EM+  + PY   + + AL+ I     P +  P+S+SK  + F+  C+QVN   R +  +LL   F+
Sbjct:  544 GTPYWMAPEIVNQK--GYDEKVDVWSLGIMLIEMIEGEPPYLNEDPLKALYLIANNGSPKLRHPESVSKQTKQFLDACLQVNVESRASVRKLLTFEFL 639          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: MYO3B_HUMAN (Myosin-IIIb OS=Homo sapiens GN=MYO3B PE=2 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 7.016e-14
Identity = 41/102 (40.20%), Postives = 54/102 (52.94%), Query Frame = 3
Query:   30 GTAFWMAPEVI---NNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVK 320
            GT FWMAPEVI      +  Y    D+WSLG T +E+     P   M  +  LFKI R  PP +  P+   ++   FI QC+  +   RP+   LLDHPF+K
Sbjct:  193 GTPFWMAPEVIACEQQYDSSYDARCDVWSLGITAIELGDGDPPLFDMHPVKTLFKIPRNPPPTLLHPEKWCEEFNHFISQCLIKDFERRPSVTHLLDHPFIK 294          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: DST4_DICDI (Serine/threonine-protein kinase dst4 OS=Dictyostelium discoideum GN=dst4 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.016e-14
Identity = 41/110 (37.27%), Postives = 62/110 (56.36%), Query Frame = 3
Query:    6 GTRVKSCRGTAFWMAPEVIN--NKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPP--IPDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKR 323
            G + K+  G+ +WM+PEVI+    + GY   ADIWSLG T +EM  S+ P   +  +  +F I     P   +P + S +  DFI  C+    + RP+A  LL+HPF+K+
Sbjct:  171 GFKQKTVVGSPYWMSPEVISPPKGSNGYDSKADIWSLGITAIEMAESKPPLFNLNPVKVIFVIPFRQAPTLEVPGNWSPEFNDFISVCLNKEADKRPSAVDLLNHPFIKK 280          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: NINAC_DROME (Neither inactivation nor afterpotential protein C OS=Drosophila melanogaster GN=ninaC PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 9.163e-14
Identity = 36/108 (33.33%), Postives = 64/108 (59.26%), Query Frame = 3
Query:   21 SCRGTAFWMAPEVIN---NKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKRLL 329
            +C G+  WMAPEV++   ++     + AD+W+LG T +E+   + P+A M    A+F+I R  PP +  P + S+   DFI + ++ N  +RP   ++++HPF+  L+
Sbjct:  179 TCIGSPCWMAPEVVSAMESREPDITVRADVWALGITTIELADGKPPFADMHPTRAMFQIIRNPPPTLMRPTNWSQQINDFISESLEKNAENRPMMVEMVEHPFLTELI 286          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: WIS1_SCHPO (Protein kinase wis1 OS=Schizosaccharomyces pombe GN=wis1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.197e-13
Identity = 42/104 (40.38%), Postives = 57/104 (54.81%), Query Frame = 3
Query:   30 GTAFWMAPEVIN-----NKNKGYGLPADIWSLGCTVLEMLTSQIPYAP---MECMAALFKIGRGSPPPIPDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFV 317
            G   +MAPE I      N    Y + AD+WSLG T+LEM     PY P       A L  I  G PP +PDS S +A+DF+ +C+  NP+ RP   +L +HP++
Sbjct:  476 GCQSYMAPERIRVGGPTNGVLTYTVQADVWSLGLTILEMALGAYPYPPESYTSIFAQLSAICDGDPPSLPDSFSPEARDFVNKCLNKNPSLRPDYHELANHPWL 579          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: STE20_PENMA (Serine/threonine-protein kinase pakA OS=Penicillium marneffei GN=pakA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.563e-13
Identity = 42/106 (39.62%), Postives = 57/106 (53.77%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPIPD--SLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKRLLATNS 341
            GT +WMAPEV+  K   YG   DIWSLG   +EM+  + PY     + AL+ I     P I D  +LS   +DF+   ++V+P  R +A  LL HPF+      NS
Sbjct:  517 GTPYWMAPEVVTRKE--YGRKVDIWSLGIMAIEMIEGEPPYLTESPLRALYLIATNGTPKIKDEQNLSPVFRDFLHLALRVDPEKRASAHDLLKHPFMSICEPLNS 620          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: PAK1_RAT (Serine/threonine-protein kinase PAK 1 OS=Rattus norvegicus GN=Pak1 PE=1 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 1.563e-13
Identity = 38/99 (38.38%), Postives = 57/99 (57.58%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVK 320
            GT +WMAPEV+  K   YG   DIWSLG   +EM+  + PY     + AL+ I     P +  P+ LS   +DF+ +C++++   R +A +LL H F+K
Sbjct:  425 GTPYWMAPEVVTRK--AYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQHQFLK 521          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: PAK1_HUMAN (Serine/threonine-protein kinase PAK 1 OS=Homo sapiens GN=PAK1 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.563e-13
Identity = 38/99 (38.38%), Postives = 57/99 (57.58%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVK 320
            GT +WMAPEV+  K   YG   DIWSLG   +EM+  + PY     + AL+ I     P +  P+ LS   +DF+ +C++++   R +A +LL H F+K
Sbjct:  426 GTPYWMAPEVVTRK--AYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQHQFLK 522          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: PAK1_BOVIN (Serine/threonine-protein kinase PAK 1 OS=Bos taurus GN=PAK1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.563e-13
Identity = 38/99 (38.38%), Postives = 57/99 (57.58%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVK 320
            GT +WMAPEV+  K   YG   DIWSLG   +EM+  + PY     + AL+ I     P +  P+ LS   +DF+ +C++++   R +A +LL H F+K
Sbjct:  425 GTPYWMAPEVVTRK--AYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQHQFLK 521          
The following BLAST results are available for this feature:
BLAST of CX288644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
TAOK3_HUMAN7.016e-1441.00Serine/threonine-protein kinase TAO3 OS=Homo sapie... [more]
SKM1_YEAST7.016e-1437.76Serine/threonine-protein kinase SKM1 OS=Saccharomy... [more]
MYO3B_HUMAN7.016e-1440.20Myosin-IIIb OS=Homo sapiens GN=MYO3B PE=2 SV=3[more]
DST4_DICDI7.016e-1437.27Serine/threonine-protein kinase dst4 OS=Dictyostel... [more]
NINAC_DROME9.163e-1433.33Neither inactivation nor afterpotential protein C ... [more]
WIS1_SCHPO1.197e-1340.38Protein kinase wis1 OS=Schizosaccharomyces pombe G... [more]
STE20_PENMA1.563e-1339.62Serine/threonine-protein kinase pakA OS=Penicilliu... [more]
PAK1_RAT1.563e-1338.38Serine/threonine-protein kinase PAK 1 OS=Rattus no... [more]
PAK1_HUMAN1.563e-1338.38Serine/threonine-protein kinase PAK 1 OS=Homo sapi... [more]
PAK1_BOVIN1.563e-1338.38Serine/threonine-protein kinase PAK 1 OS=Bos tauru... [more]

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Properties
Property NameValue
Genbank descriptionC02002G04SK IF1 Citrus clementina cDNA clone C02002G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288644 ID=CX288644; Name=CX288644; organism=Citrus clementina; type=EST; length=566bp
AATTCGGCACGAGGGTAAAATCTTGCAGAGGGACTGCATTCTGGATGGCC
CCAGAGGTTATTAATAATAAGAACAAAGGTTATGGGCTTCCAGCTGATAT
ATGGAGCCTTGGCTGCACTGTGTTGGAGATGTTAACCAGTCAAATTCCGT
ATGCTCCTATGGAATGTATGGCGGCATTGTTCAAGATTGGAAGGGGTTCG
CCACCACCTATTCCTGATAGTCTCTCAAAAGATGCTCAGGATTTTATCAA
GCAATGTGTACAAGTTAATCCAAATGATCGTCCCACTGCAGCTCAGCTCT
TAGACCACCCATTTGTTAAGAGACTACTTGCCACAAACTCAGGCTCAGCA
TCTCCTTATCTAGGTAGACGGTGAGGTACATATCAATTGTTAAATTACAT
TTCAGTACTTTTCCTGTTGCTGTGCTCTCCTTAACACTGGAAAGAAGAGC
TAAAACTGTGGGCGTGAATGCTTCTATTTAATACAATTAGCCTCTCTGTG
CTCCATCAGTCTCCACAGTGAGTCACACGAATTCTTCTACCATGCTTTAA
TTTTATGTTCAATGCA
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