CX288644

Overview
NameCX288644
Unique NameCX288644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length566
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: STE20_ASPFU (Serine/threonine-protein kinase ste20 OS=Aspergillus fumigatus GN=ste20 PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.482e-13
Identity = 40/98 (40.82%), Postives = 55/98 (56.12%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPIPD--SLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFV 317
            GT +WMAPEV+  K   YG   DIWSLG   +EM+  + PY     + AL+ I     P I D  +LS   +DF+   ++V+P  R +A  LL HPF+
Sbjct:  690 GTPYWMAPEVVTRKE--YGRKVDIWSLGIMAIEMIEGEPPYLTESPLRALYLIATNGTPTIKDEHNLSPVFRDFLHLALKVDPEKRASAHDLLMHPFM 785          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: RAD53_YEAST (Serine/threonine-protein kinase RAD53 OS=Saccharomyces cerevisiae GN=RAD53 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.482e-13
Identity = 44/119 (36.97%), Postives = 69/119 (57.98%), Query Frame = 3
Query:    6 GTRVKSCRGTAFWMAPEVINNKNKG-----------YGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGS--PPPIPD-SLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVK 320
            G+ +K+  GT  ++APEVI  K+             Y    D+WS+GC V  +LT  +P++         +IGRGS    P+ D  +S++A+DFI   +QV+PN+R TAA+ L+HP++K
Sbjct:  349 GSFMKTFCGTLAYVAPEVIRGKDTSVSPDEYEERNEYSSLVDMWSMGCLVYVILTGHLPFSGSTQDQLYKQIGRGSYHEGPLKDFRISEEARDFIDSLLQVDPNNRSTAAKALNHPWIK 467          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: PAK1_MOUSE (Serine/threonine-protein kinase PAK 1 OS=Mus musculus GN=Pak1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.482e-13
Identity = 38/99 (38.38%), Postives = 57/99 (57.58%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVK 320
            GT +WMAPEV+  K   YG   DIWSLG   +EM+  + PY     + AL+ I     P +  P+ LS   +DF++ C++++   R +A +LL H F+K
Sbjct:  426 GTPYWMAPEVVTRK--AYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLQCCLEMDVEKRGSAKELLQHQFLK 522          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: NEK6_ORYSJ (Serine/threonine-protein kinase Nek6 OS=Oryza sativa subsp. japonica GN=NEK6 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.482e-13
Identity = 38/111 (34.23%), Postives = 61/111 (54.95%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPIPDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKRLLATNSGSASPYL 362
            GT  +M PE++   +  YG  +DIWSLGC + E+L  +  +   +  + + KI R S  P+P   S   +  +K  ++ NP  RPTA +LL HP+++  LA +   +  YL
Sbjct:  164 GTPNYMCPEIL--ADIPYGYKSDIWSLGCCMFEILAHRPAFKAADMASLINKINRSSISPMPPIYSSSLKQIVKSMLRKNPEHRPTAGELLRHPYLQPYLAESCSCSPIYL 272          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: PBS2_YEAST (MAP kinase kinase PBS2 OS=Saccharomyces cerevisiae GN=PBS2 PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 4.548e-13
Identity = 43/103 (41.75%), Postives = 57/103 (55.34%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKG---YGLPADIWSLGCTVLEMLTSQIPYAPM---ECMAALFKIGRGSPPPIP-DSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFV 317
            G   +MAPE I + N     Y + +DIWSLG ++LEM   + PY P       + L  I  G PP +P D  S DAQDF+  C+Q  P  RPT A L +HP++
Sbjct:  521 GCQSYMAPERIKSLNPDRATYTVQSDIWSLGLSILEMALGRYPYPPETYDNIFSQLSAIVDGPPPRLPSDKFSSDAQDFVSLCLQKIPERRPTYAALTEHPWL 623          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: PAK6_PONAB (Serine/threonine-protein kinase PAK 6 OS=Pongo abelii GN=PAK6 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.548e-13
Identity = 44/106 (41.51%), Postives = 62/106 (58.49%), Query Frame = 3
Query:   18 KSCRGTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPY---APMECMAALFKIGRGSPPP---IPDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFV 317
            KS  GT +WMAPEVI+     Y    DIWSLG  V+EM+  + PY   +P++ M  L    R SPPP       +S   +DF+++ +  +P +R TA +LLDHPF+
Sbjct:  559 KSLVGTPYWMAPEVISRSL--YATEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRL----RDSPPPKLKNSHKVSPVLRDFLERMLVRDPQERATAQELLDHPFL 658          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: PAK6_HUMAN (Serine/threonine-protein kinase PAK 6 OS=Homo sapiens GN=PAK6 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.548e-13
Identity = 44/106 (41.51%), Postives = 62/106 (58.49%), Query Frame = 3
Query:   18 KSCRGTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPY---APMECMAALFKIGRGSPPP---IPDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFV 317
            KS  GT +WMAPEVI+     Y    DIWSLG  V+EM+  + PY   +P++ M  L    R SPPP       +S   +DF+++ +  +P +R TA +LLDHPF+
Sbjct:  559 KSLVGTPYWMAPEVISRSL--YATEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRL----RDSPPPKLKNSHKVSPVLRDFLERMLVRDPQERATAQELLDHPFL 658          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: PAK1_CAEEL (Serine/threonine-protein kinase pak-1 OS=Caenorhabditis elegans GN=pak-1 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 4.548e-13
Identity = 37/99 (37.37%), Postives = 57/99 (57.58%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPIP--DSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVK 320
            GT +WMAPEV+  K   YG   D+WSLG   +EM+  + PY     + A++ I     P  P  DS++   +DF+   ++V   +R +A+QLL HPF++
Sbjct:  451 GTPYWMAPEVVTRKQ--YGPKVDVWSLGIMAIEMVEGEPPYLNENPLRAIYLIATNGKPDFPGRDSMTLLFKDFVDSALEVQVENRWSASQLLTHPFLR 547          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: M4K4_HUMAN (Mitogen-activated protein kinase kinase kinase kinase 4 OS=Homo sapiens GN=MAP4K4 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 4.548e-13
Identity = 42/101 (41.58%), Postives = 53/101 (52.48%), Query Frame = 3
Query:   30 GTAFWMAPEVI---NNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPIPD-SLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVK 320
            GT +WMAPEVI    N +  Y   +D+WS G T +EM     P   M  M ALF I R  PP +     SK    FI+ C+  N   RP+  QLL HPF++
Sbjct:  190 GTPYWMAPEVIACDENPDATYDYRSDLWSCGITAIEMAEGAPPLCDMHPMRALFLIPRNPPPRLKSKKWSKKFFSFIEGCLVKNYMQRPSTEQLLKHPFIR 290          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: M2K2_ARATH (Mitogen-activated protein kinase kinase 2 OS=Arabidopsis thaliana GN=MKK2 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 4.548e-13
Identity = 48/138 (34.78%), Postives = 73/138 (52.90%), Query Frame = 3
Query:   30 GTAFWMAPE-VINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAP---MECMAALFKIGRG----SPPPIPD-SLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKRL---------LATNSGSASPYLGRR*GTYQL 389
            GT  +M+PE ++ NK   YG  +DIWSLG  VLE  T + PYAP    E   ++F++        PP +P  + S +   FI  C+Q +PN R +A +L++HPF+ +            T++GS    LG   GT+ +
Sbjct:  229 GTYNYMSPERIVGNK---YGNKSDIWSLGLVVLECATGKFPYAPPNQEETWTSVFELMEAIVDQPPPALPSGNFSPELSSFISTCLQKDPNSRSSAKELMEHPFLNKYDYSGINLASYFTDAGSPLATLGNLSGTFSV 363          
The following BLAST results are available for this feature:
BLAST of CX288644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
STE20_ASPFU3.482e-1340.82Serine/threonine-protein kinase ste20 OS=Aspergill... [more]
RAD53_YEAST3.482e-1336.97Serine/threonine-protein kinase RAD53 OS=Saccharom... [more]
PAK1_MOUSE3.482e-1338.38Serine/threonine-protein kinase PAK 1 OS=Mus muscu... [more]
NEK6_ORYSJ3.482e-1334.23Serine/threonine-protein kinase Nek6 OS=Oryza sati... [more]
PBS2_YEAST4.548e-1341.75MAP kinase kinase PBS2 OS=Saccharomyces cerevisiae... [more]
PAK6_PONAB4.548e-1341.51Serine/threonine-protein kinase PAK 6 OS=Pongo abe... [more]
PAK6_HUMAN4.548e-1341.51Serine/threonine-protein kinase PAK 6 OS=Homo sapi... [more]
PAK1_CAEEL4.548e-1337.37Serine/threonine-protein kinase pak-1 OS=Caenorhab... [more]
M4K4_HUMAN4.548e-1341.58Mitogen-activated protein kinase kinase kinase kin... [more]
M2K2_ARATH4.548e-1334.78Mitogen-activated protein kinase kinase 2 OS=Arabi... [more]

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Properties
Property NameValue
Genbank descriptionC02002G04SK IF1 Citrus clementina cDNA clone C02002G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288644 ID=CX288644; Name=CX288644; organism=Citrus clementina; type=EST; length=566bp
AATTCGGCACGAGGGTAAAATCTTGCAGAGGGACTGCATTCTGGATGGCC
CCAGAGGTTATTAATAATAAGAACAAAGGTTATGGGCTTCCAGCTGATAT
ATGGAGCCTTGGCTGCACTGTGTTGGAGATGTTAACCAGTCAAATTCCGT
ATGCTCCTATGGAATGTATGGCGGCATTGTTCAAGATTGGAAGGGGTTCG
CCACCACCTATTCCTGATAGTCTCTCAAAAGATGCTCAGGATTTTATCAA
GCAATGTGTACAAGTTAATCCAAATGATCGTCCCACTGCAGCTCAGCTCT
TAGACCACCCATTTGTTAAGAGACTACTTGCCACAAACTCAGGCTCAGCA
TCTCCTTATCTAGGTAGACGGTGAGGTACATATCAATTGTTAAATTACAT
TTCAGTACTTTTCCTGTTGCTGTGCTCTCCTTAACACTGGAAAGAAGAGC
TAAAACTGTGGGCGTGAATGCTTCTATTTAATACAATTAGCCTCTCTGTG
CTCCATCAGTCTCCACAGTGAGTCACACGAATTCTTCTACCATGCTTTAA
TTTTATGTTCAATGCA
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