CX288644

Overview
NameCX288644
Unique NameCX288644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length566
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: M3K6_HUMAN (Mitogen-activated protein kinase kinase kinase 6 OS=Homo sapiens GN=MAP3K6 PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 9.790e-16
Identity = 44/99 (44.44%), Postives = 64/99 (64.65%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPM-ECMAALFKIGRGS-PPPIPDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVK 320
            GT  +MAPE+I+   +GYG  ADIWSLGCTV+EM T + P+  +    AA+F++G     PP+P SLS +AQ F+ +  + +P  R +A  LL  PF++
Sbjct:  809 GTLQYMAPEIIDQGPRGYGKAADIWSLGCTVIEMATGRPPFHELGSPQAAMFQVGMYKVHPPMPSSLSAEAQAFLLRTFEPDPRLRASAQTLLGDPFLQ 907          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: STE11_YEAS6 (Serine/threonine-protein kinase STE11 OS=Saccharomyces cerevisiae (strain AWRI1631) GN=STE11 PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.670e-15
Identity = 38/99 (38.38%), Postives = 60/99 (60.61%), Query Frame = 3
Query:   21 SCRGTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPIPDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFV 317
            S +G+ FWM+PEV+  K       ADIWS GC V+EM T + P+     M A+FKIG  + P IP   + + ++F+++  +++   RP A +LL HP++
Sbjct:  616 SLQGSVFWMSPEVV--KQSATTAKADIWSTGCVVIEMFTGKHPFPDFSQMQAIFKIGTNTTPEIPSWATSEGKNFLRKAFELDYQYRPGALELLQHPWL 712          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: PAKC_DICDI (Serine/threonine-protein kinase pakC OS=Dictyostelium discoideum GN=pakC PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.670e-15
Identity = 45/113 (39.82%), Postives = 63/113 (55.75%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPIPDSL--SKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKRLLATNSGSASPYL 362
            GT +WMAPE+I   +  YG+  DIWSLG  ++EM   + PY     + ALF I     PP+ ++   SK  QDF  +C+ +N  +RP A  LL HPF+   LA +S    P +
Sbjct:  379 GTPYWMAPELIRGHD--YGVKVDIWSLGIMMMEMAEGEPPYMDFPPLRALFLITTKGIPPLKETTKWSKTFQDFFSKCLDINVANRPDATDLLKHPFMD--LACDSSEFKPLI 487          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: DST3_DICDI (Serine/threonine-protein kinase dst3 OS=Dictyostelium discoideum GN=dst3 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.670e-15
Identity = 43/106 (40.57%), Postives = 60/106 (56.60%), Query Frame = 3
Query:    6 GTRVKSCRGTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPP--IPDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFV 317
            G ++ +  G+ +WMAPE+I    +GY   ADIWSLG T +E+     P   +     +F I    PP   IP   S +  DF+KQC+ +NP  RP+A QLL HPF+
Sbjct:  182 GQKMNTVIGSPYWMAPEII--MGQGYDQKADIWSLGITAIEIAELVPPRFDVPPSRVIFTIPHQPPPSLKIPSDWSPEFNDFVKQCLSMNPALRPSAQQLLSHPFI 285          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: SPS1_YEAST (Sporulation-specific protein 1 OS=Saccharomyces cerevisiae GN=SPS1 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.181e-15
Identity = 41/103 (39.81%), Postives = 56/103 (54.37%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPIPDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKRLLATN 338
            GT +WMAPEV+  +  GY   ADIWSLG T  E+L    P +  + M  +  + +  PP +    S  A+DF+  C+   P DRP+A  LL   FVK +  TN
Sbjct:  177 GTPYWMAPEVVCCEVDGYNEKADIWSLGITTYELLKGLPPLSKYDPMKVMTNLPKRKPPKLQGPFSDAAKDFVAGCLVKTPADRPSAYNLLSFEFVKNITITN 279          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: WIS4_SCHPO (MAP kinase kinase kinase wis4 OS=Schizosaccharomyces pombe GN=wis4 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.346e-15
Identity = 41/99 (41.41%), Postives = 59/99 (59.60%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMEC-MAALFKIGRGSPPPIP--DSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFV 317
            GT  +MAPE+I    KG     DIWSLGC +LEM+T   P++ M+   A ++ +     P IP  + +S  A+DFI+QC + +P  RP A  LL HP++
Sbjct: 1208 GTPMYMAPEIILGTKKGDFGAMDIWSLGCVILEMMTGSTPWSEMDNEWAIMYHVAAMHTPSIPQNEKISSLARDFIEQCFERDPEQRPRAVDLLTHPWI 1306          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: PAKB_DICDI (Serine/threonine-protein kinase pakB OS=Dictyostelium discoideum GN=pakB PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.288e-15
Identity = 46/111 (41.44%), Postives = 61/111 (54.95%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPIPDS--LSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKRLLATNSGSASP 356
            GT +WMAPE+I  +N  Y    DIWSLG   +EM  S+ PY     + ALF I     P + D    S D +DF+K+C+  +  +RP A  LL+HPF+K   A NS    P
Sbjct:  728 GTPYWMAPELIRGQN--YDRKVDIWSLGIMAMEMAESEPPYMSFPPLRALFLITTKGIPDLKDQNKWSDDFKDFVKKCLDKDVENRPEAKVLLNHPFLK--TACNSNGLVP 834          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: NEK3_DICDI (Probable serine/threonine-protein kinase nek3 OS=Dictyostelium discoideum GN=nek3 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.288e-15
Identity = 37/100 (37.00%), Postives = 62/100 (62.00%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPIPDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKRLL 329
            GT ++++PE+I N+ KGY   +DIWSLGC + E+ T +  +      A + KI +G+ PPIP   S D ++ I   +Q++P +RP+   +L+ PF+ + L
Sbjct:  170 GTPYYLSPELIQNE-KGYDHKSDIWSLGCVLYELTTLKHAFNAANLPALVLKILKGTYPPIPSHYSNDLRNLISSMLQIDPKNRPSVNDILELPFINQYL 268          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: MYO3B_MOUSE (Myosin-IIIb OS=Mus musculus GN=Myo3b PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 8.288e-15
Identity = 43/102 (42.16%), Postives = 55/102 (53.92%), Query Frame = 3
Query:   30 GTAFWMAPEVI---NNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVK 320
            GT FWMAPEVI      +  Y    D+WSLG T +E+     P   M  +  LFKI R  PP +  PDS  ++   FI QC+  +   RP+   LLDHPF+K
Sbjct:  181 GTPFWMAPEVIACEQQYDSSYDARCDVWSLGITAIELGDGDPPLFEMHPVKMLFKIPRNPPPTLLHPDSWCEEFNHFISQCLIKDFEKRPSVTHLLDHPFIK 282          
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: PAK2_RAT (Serine/threonine-protein kinase PAK 2 OS=Rattus norvegicus GN=Pak2 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.414e-14
Identity = 43/113 (38.05%), Postives = 64/113 (56.64%), Query Frame = 3
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKRLLATNSGSASPYL 362
            GT +WMAPEV+  K   YG   DIWSLG   +EM+  + PY     + AL+ I     P +  P+ LS   +DF+ +C++++   R +A +LL HPF+K  LA    S +P +
Sbjct:  405 GTPYWMAPEVVTRK--AYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPEKLSPIFRDFLNRCLEMDVEKRGSAKELLQHPFLK--LAKPLSSLTPLI 513          
The following BLAST results are available for this feature:
BLAST of CX288644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
M3K6_HUMAN9.790e-1644.44Mitogen-activated protein kinase kinase kinase 6 O... [more]
STE11_YEAS61.670e-1538.38Serine/threonine-protein kinase STE11 OS=Saccharom... [more]
PAKC_DICDI1.670e-1539.82Serine/threonine-protein kinase pakC OS=Dictyostel... [more]
DST3_DICDI1.670e-1540.57Serine/threonine-protein kinase dst3 OS=Dictyostel... [more]
SPS1_YEAST2.181e-1539.81Sporulation-specific protein 1 OS=Saccharomyces ce... [more]
WIS4_SCHPO6.346e-1541.41MAP kinase kinase kinase wis4 OS=Schizosaccharomyc... [more]
PAKB_DICDI8.288e-1541.44Serine/threonine-protein kinase pakB OS=Dictyostel... [more]
NEK3_DICDI8.288e-1537.00Probable serine/threonine-protein kinase nek3 OS=D... [more]
MYO3B_MOUSE8.288e-1542.16Myosin-IIIb OS=Mus musculus GN=Myo3b PE=2 SV=2[more]
PAK2_RAT1.414e-1438.05Serine/threonine-protein kinase PAK 2 OS=Rattus no... [more]

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Properties
Property NameValue
Genbank descriptionC02002G04SK IF1 Citrus clementina cDNA clone C02002G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288644 ID=CX288644; Name=CX288644; organism=Citrus clementina; type=EST; length=566bp
AATTCGGCACGAGGGTAAAATCTTGCAGAGGGACTGCATTCTGGATGGCC
CCAGAGGTTATTAATAATAAGAACAAAGGTTATGGGCTTCCAGCTGATAT
ATGGAGCCTTGGCTGCACTGTGTTGGAGATGTTAACCAGTCAAATTCCGT
ATGCTCCTATGGAATGTATGGCGGCATTGTTCAAGATTGGAAGGGGTTCG
CCACCACCTATTCCTGATAGTCTCTCAAAAGATGCTCAGGATTTTATCAA
GCAATGTGTACAAGTTAATCCAAATGATCGTCCCACTGCAGCTCAGCTCT
TAGACCACCCATTTGTTAAGAGACTACTTGCCACAAACTCAGGCTCAGCA
TCTCCTTATCTAGGTAGACGGTGAGGTACATATCAATTGTTAAATTACAT
TTCAGTACTTTTCCTGTTGCTGTGCTCTCCTTAACACTGGAAAGAAGAGC
TAAAACTGTGGGCGTGAATGCTTCTATTTAATACAATTAGCCTCTCTGTG
CTCCATCAGTCTCCACAGTGAGTCACACGAATTCTTCTACCATGCTTTAA
TTTTATGTTCAATGCA
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