CX288644

Overview
NameCX288644
Unique NameCX288644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length566
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: PAK2_RABIT (Serine/threonine-protein kinase PAK 2 OS=Oryctolagus cuniculus GN=PAK2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.414e-14
Identity = 43/113 (38.05%), Postives = 64/113 (56.64%), Query Frame = 3 
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKRLLATNSGSASPYL 362
            GT +WMAPEV+  K   YG   DIWSLG   +EM+  + PY     + AL+ I     P +  P+ LS   +DF+ +C++++   R +A +LL HPF+K  LA    S +P +
Sbjct:  405 GTPYWMAPEVVTRK--AYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPEKLSPIFRDFLNRCLEMDVEKRGSAKELLQHPFLK--LAKPLSSLTPLI 513
[Close]
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: PAK2_MOUSE (Serine/threonine-protein kinase PAK 2 OS=Mus musculus GN=Pak2 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.414e-14
Identity = 43/113 (38.05%), Postives = 64/113 (56.64%), Query Frame = 3 
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKRLLATNSGSASPYL 362
            GT +WMAPEV+  K   YG   DIWSLG   +EM+  + PY     + AL+ I     P +  P+ LS   +DF+ +C++++   R +A +LL HPF+K  LA    S +P +
Sbjct:  405 GTPYWMAPEVVTRK--AYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPEKLSPIFRDFLNRCLEMDVEKRGSAKELLQHPFLK--LAKPLSSLTPLI 513
[Close]
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: PAK2_HUMAN (Serine/threonine-protein kinase PAK 2 OS=Homo sapiens GN=PAK2 PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 1.414e-14
Identity = 43/113 (38.05%), Postives = 64/113 (56.64%), Query Frame = 3 
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKRLLATNSGSASPYL 362
            GT +WMAPEV+  K   YG   DIWSLG   +EM+  + PY     + AL+ I     P +  P+ LS   +DF+ +C++++   R +A +LL HPF+K  LA    S +P +
Sbjct:  405 GTPYWMAPEVVTRK--AYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPEKLSPIFRDFLNRCLEMDVEKRGSAKELLQHPFLK--LAKPLSSLTPLI 513
[Close]
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: STE20_YEAST (Serine/threonine-protein kinase STE20 OS=Saccharomyces cerevisiae GN=STE20 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.846e-14
Identity = 40/109 (36.70%), Postives = 60/109 (55.05%), Query Frame = 3 
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKRLLATNSGSA 350
            GT +WMAPEV++ K   YG   DIWSLG  ++EM+  + PY     + AL+ I     P +  P++LS   + F+  C+ V P DR +A +LL   ++  +   NS  A
Sbjct:  776 GTPYWMAPEVVSRKE--YGPKVDIWSLGIMIIEMIEGEPPYLNETPLRALYLIATNGTPKLKEPENLSSSLKKFLDWCLCVEPEDRASATELLHDEYITEIAEANSSLA 882
[Close]
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: SHK2_SCHPO (Serine/threonine-protein kinase shk2 OS=Schizosaccharomyces pombe GN=shk2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.846e-14
Identity = 39/104 (37.50%), Postives = 62/104 (59.62%), Query Frame = 3 
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKRLLAT 335
            GT +WMAPEV+  K   YG   DIWSLG  ++EM+ ++ PY   + + AL+ I +   P +  P+ +SK+ + F+  C+ ++   R TAA+LL H F+ +   T
Sbjct:  471 GTPYWMAPEVV--KQNEYGTKVDIWSLGIMIIEMIENEPPYLREDPIRALYLIAKNGTPTLKKPNLVSKNLKSFLNSCLTIDTIFRATAAELLTHSFLNQACPT 572
[Close]
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: PAK3_RAT (Serine/threonine-protein kinase PAK 3 OS=Rattus norvegicus GN=Pak3 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.846e-14
Identity = 43/113 (38.05%), Postives = 65/113 (57.52%), Query Frame = 3 
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKRLLATNSGSASPYL 362
            GT +WMAPEV+  K   YG   DIWSLG   +EM+  + PY     + AL+ I     P +  P+ LS   +DF+ +C++++ + R +A +LL HPF+K  LA    S +P +
Sbjct:  424 GTPYWMAPEVVTRK--AYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPERLSAVFRDFLNRCLEMDVDRRGSAKELLQHPFLK--LAKPLSSLTPLI 532
[Close]
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: PAK3_PONPY (Serine/threonine-protein kinase PAK 3 OS=Pongo pygmaeus GN=PAK3 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.846e-14
Identity = 43/113 (38.05%), Postives = 65/113 (57.52%), Query Frame = 3 
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKRLLATNSGSASPYL 362
            GT +WMAPEV+  K   YG   DIWSLG   +EM+  + PY     + AL+ I     P +  P+ LS   +DF+ +C++++ + R +A +LL HPF+K  LA    S +P +
Sbjct:  439 GTPYWMAPEVVTRK--AYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPERLSAVFRDFLNRCLEMDVDRRGSAKELLQHPFLK--LAKPLSSLTPLI 547
[Close]
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: PAK3_PANTR (Serine/threonine-protein kinase PAK 3 OS=Pan troglodytes GN=PAK3 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.846e-14
Identity = 43/113 (38.05%), Postives = 65/113 (57.52%), Query Frame = 3 
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKRLLATNSGSASPYL 362
            GT +WMAPEV+  K   YG   DIWSLG   +EM+  + PY     + AL+ I     P +  P+ LS   +DF+ +C++++ + R +A +LL HPF+K  LA    S +P +
Sbjct:  439 GTPYWMAPEVVTRK--AYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPERLSAVFRDFLNRCLEMDVDRRGSAKELLQHPFLK--LAKPLSSLTPLI 547
[Close]
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: PAK3_MOUSE (Serine/threonine-protein kinase PAK 3 OS=Mus musculus GN=Pak3 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.846e-14
Identity = 43/113 (38.05%), Postives = 65/113 (57.52%), Query Frame = 3 
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKRLLATNSGSASPYL 362
            GT +WMAPEV+  K   YG   DIWSLG   +EM+  + PY     + AL+ I     P +  P+ LS   +DF+ +C++++ + R +A +LL HPF+K  LA    S +P +
Sbjct:  439 GTPYWMAPEVVTRK--AYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPERLSAVFRDFLNRCLEMDVDRRGSAKELLQHPFLK--LAKPLSSLTPLI 547
[Close]
BLAST of CX288644 vs. ExPASy Swiss-Prot
Match: PAK3_HUMAN (Serine/threonine-protein kinase PAK 3 OS=Homo sapiens GN=PAK3 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.846e-14
Identity = 43/113 (38.05%), Postives = 65/113 (57.52%), Query Frame = 3 
Query:   30 GTAFWMAPEVINNKNKGYGLPADIWSLGCTVLEMLTSQIPYAPMECMAALFKIGRGSPPPI--PDSLSKDAQDFIKQCVQVNPNDRPTAAQLLDHPFVKRLLATNSGSASPYL 362
            GT +WMAPEV+  K   YG   DIWSLG   +EM+  + PY     + AL+ I     P +  P+ LS   +DF+ +C++++ + R +A +LL HPF+K  LA    S +P +
Sbjct:  439 GTPYWMAPEVVTRK--AYGPKVDIWSLGIMAIEMVEGEPPYLNENPLRALYLIATNGTPELQNPERLSAVFRDFLNRCLEMDVDRRGSAKELLQHPFLK--LAKPLSSLTPLI 547
The following BLAST results are available for this feature:
BLAST of CX288644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 198
Match NameE-valueIdentityDescription
PAK2_RABIT1.414e-1438.05Serine/threonine-protein kinase PAK 2 OS=Oryctolag... [more]
PAK2_MOUSE1.414e-1438.05Serine/threonine-protein kinase PAK 2 OS=Mus muscu... [more]
PAK2_HUMAN1.414e-1438.05Serine/threonine-protein kinase PAK 2 OS=Homo sapi... [more]
STE20_YEAST1.846e-1436.70Serine/threonine-protein kinase STE20 OS=Saccharom... [more]
SHK2_SCHPO1.846e-1437.50Serine/threonine-protein kinase shk2 OS=Schizosacc... [more]
PAK3_RAT1.846e-1438.05Serine/threonine-protein kinase PAK 3 OS=Rattus no... [more]
PAK3_PONPY1.846e-1438.05Serine/threonine-protein kinase PAK 3 OS=Pongo pyg... [more]
PAK3_PANTR1.846e-1438.05Serine/threonine-protein kinase PAK 3 OS=Pan trogl... [more]
PAK3_MOUSE1.846e-1438.05Serine/threonine-protein kinase PAK 3 OS=Mus muscu... [more]
PAK3_HUMAN1.846e-1438.05Serine/threonine-protein kinase PAK 3 OS=Homo sapi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02002G04SK IF1 Citrus clementina cDNA clone C02002G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288644 ID=CX288644; Name=CX288644; organism=Citrus clementina; type=EST; length=566bp
AATTCGGCACGAGGGTAAAATCTTGCAGAGGGACTGCATTCTGGATGGCC
CCAGAGGTTATTAATAATAAGAACAAAGGTTATGGGCTTCCAGCTGATAT
ATGGAGCCTTGGCTGCACTGTGTTGGAGATGTTAACCAGTCAAATTCCGT
ATGCTCCTATGGAATGTATGGCGGCATTGTTCAAGATTGGAAGGGGTTCG
CCACCACCTATTCCTGATAGTCTCTCAAAAGATGCTCAGGATTTTATCAA
GCAATGTGTACAAGTTAATCCAAATGATCGTCCCACTGCAGCTCAGCTCT
TAGACCACCCATTTGTTAAGAGACTACTTGCCACAAACTCAGGCTCAGCA
TCTCCTTATCTAGGTAGACGGTGAGGTACATATCAATTGTTAAATTACAT
TTCAGTACTTTTCCTGTTGCTGTGCTCTCCTTAACACTGGAAAGAAGAGC
TAAAACTGTGGGCGTGAATGCTTCTATTTAATACAATTAGCCTCTCTGTG
CTCCATCAGTCTCCACAGTGAGTCACACGAATTCTTCTACCATGCTTTAA
TTTTATGTTCAATGCA
back to top