CX288660

Overview
NameCX288660
Unique NameCX288660
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length447
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig141 contig Ccv1_Contig141:1..447. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX288660 vs. ExPASy Swiss-Prot
Match: UBIQ_ARATH (Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.389e-35
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 1 
Query:   40 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 267
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 120.553 bits (301), Expect = 3.101e-27
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:  268 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 447
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
[Close]
BLAST of CX288660 vs. ExPASy Swiss-Prot
Match: UBIQ_COPCO (Ubiquitin OS=Coprinus congregatus PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.094e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 1 
Query:   40 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 267
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQ RLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 119.398 bits (298), Expect = 6.908e-27
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:  268 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 447
            MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
[Close]
BLAST of CX288660 vs. ExPASy Swiss-Prot
Match: UBIQ_CHLRE (Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 4.041e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = 1 
Query:   40 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 267
            MQIFVKTLTGKTITLEVESSDTI+NVKAKIQDKEGIPPDQ RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 119.013 bits (297), Expect = 9.022e-27
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:  268 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 447
            MQIFVKTLTGKTITLEVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
[Close]
BLAST of CX288660 vs. ExPASy Swiss-Prot
Match: UBIQ_YEAST (Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 6.892e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 1 
Query:   40 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 267
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQ RLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 118.242 bits (295), Expect = 1.539e-26
Identity = 58/60 (96.67%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:  268 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 447
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
[Close]
BLAST of CX288660 vs. ExPASy Swiss-Prot
Match: UBIQ_SCHPO (Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 6.892e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 1 
Query:   40 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 267
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQ RLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 118.242 bits (295), Expect = 1.539e-26
Identity = 58/60 (96.67%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:  268 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 447
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
[Close]
BLAST of CX288660 vs. ExPASy Swiss-Prot
Match: UBIQ_KLULA (Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 6.892e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 1 
Query:   40 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 267
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQ RLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 118.242 bits (295), Expect = 1.539e-26
Identity = 58/60 (96.67%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:  268 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 447
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
[Close]
BLAST of CX288660 vs. ExPASy Swiss-Prot
Match: UBIQ_CRYNE (Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 6.892e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 1 
Query:   40 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 267
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQ RLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 118.242 bits (295), Expect = 1.539e-26
Identity = 58/60 (96.67%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:  268 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 447
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
[Close]
BLAST of CX288660 vs. ExPASy Swiss-Prot
Match: UBIQ_CANAL (Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 6.892e-35
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 1 
Query:   40 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 267
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQ RLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 118.242 bits (295), Expect = 1.539e-26
Identity = 58/60 (96.67%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:  268 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 447
            MQIFVKTLTGKTITLEVESSDTIDNVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
[Close]
BLAST of CX288660 vs. ExPASy Swiss-Prot
Match: UBL1_ORYSJ (Ubiquitin-like protein 1 OS=Oryza sativa subsp. japonica GN=UBL1 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 9.001e-35
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 1 
Query:   40 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 267
            MQIFVKTLTGKTITLEVESSDTI NVKAK+QDKEGIPPDQ RLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIQNVKAKVQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 117.857 bits (294), Expect = 2.010e-26
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:  268 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 447
            MQIFVKTLTGKTITLEVESSDTI NVKAK+QDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIQNVKAKVQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
[Close]
BLAST of CX288660 vs. ExPASy Swiss-Prot
Match: UBIQ_NEUCR (Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.176e-34
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = 1 
Query:   40 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQXRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 267
            MQIFVKTLTGKTITLEVESSDTIDNVK KIQDKEGIPPDQ RLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 117.472 bits (293), Expect = 2.625e-26
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:  268 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 447
            MQIFVKTLTGKTITLEVESSDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYN
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
The following BLAST results are available for this feature:
BLAST of CX288660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
UBIQ_ARATH1.389e-3598.68Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=... [more]
UBIQ_COPCO3.094e-3597.37Ubiquitin OS=Coprinus congregatus PE=1 SV=1[more]
UBIQ_CHLRE4.041e-3597.37Ubiquitin OS=Chlamydomonas reinhardtii GN=UBI1 PE=... [more]
UBIQ_YEAST6.892e-3596.05Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1... [more]
UBIQ_SCHPO6.892e-3596.05Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=... [more]
UBIQ_KLULA6.892e-3596.05Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=... [more]
UBIQ_CRYNE6.892e-3596.05Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 ... [more]
UBIQ_CANAL6.892e-3596.05Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1[more]
UBL1_ORYSJ9.001e-3596.05Ubiquitin-like protein 1 OS=Oryza sativa subsp. ja... [more]
UBIQ_NEUCR1.176e-3496.05Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC02002H09SK IF1 Citrus clementina cDNA clone C02002H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288660 ID=CX288660; Name=CX288660; organism=Citrus clementina; type=EST; length=447bp
GAGTCAACCCTCCATTTGGTGCTTCGTCTCCGTGGTGGCATGCAGATCTT
TGTGAAAACCCTCACCGGAAAAACAATTACTCTTGAGGTTGAAAGTTCTG
ACACCATCGACAACGTGAAAGCAAAAATTCAAGACAAGGAGGGTATCCCA
CCAGATCAGCANAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGAAG
GACTCTTGCAGACTATAACATCCAGAAAGAATCCACTCTTCACTTGGTTC
TTCGCCTCCGTGGTGGTATGCAGATTTTTGTGAAGACACTCACTGGGAAA
ACCATCACATTGGAGGTTGAGAGTTCGGACACAATTGACAATGTGAAGGC
TAAGATCCAGGATAAGGAGGGGATTCCCCCAGACCAGCAAAGGTTGATCT
TTGCTGGAAAACAACTTGAGGATGGAAGGACTCTTGCTGATTACAAC
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