CX288663

Overview
NameCX288663
Unique NameCX288663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length335
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14166 contig Ccv1_Contig14166:1007..1341. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288663 vs. ExPASy Swiss-Prot
Match: EF1A_PEA (Elongation factor 1-alpha OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 8.447e-55
Identity = 101/111 (90.99%), Postives = 106/111 (95.50%), Query Frame = 1
Query:    1 DLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAXKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDM 333
            DLK G VASNSKDDPAK A+NFTSQVIIMNHPGQIGNGYAPVLDCHTSHIA KFAE++TKIDRRSGKE+EKEPKFLKNGDAG VKMIPTKPMVVETF+EYPPLGRFAVRDM
Sbjct:  307 DLKHGLVASNSKDDPAKDAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELITKIDRRSGKEIEKEPKFLKNGDAGMVKMIPTKPMVVETFAEYPPLGRFAVRDM 417          
BLAST of CX288663 vs. ExPASy Swiss-Prot
Match: EF1A2_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare GN=BLT63 PE=1 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 4.192e-54
Identity = 101/111 (90.99%), Postives = 105/111 (94.59%), Query Frame = 1
Query:    1 DLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAXKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDM 333
            DLKRGYVASNSKDDPAK A+NFT+QVIIMNHPGQI NGYAPVLDCHTSHIA KFAEI TKIDRRSGKELE  PKFLKNGDAGFVKMIPTKPMVVETF++YPPLGRFAVRDM
Sbjct:  307 DLKRGYVASNSKDDPAKEAANFTAQVIIMNHPGQISNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEAAPKFLKNGDAGFVKMIPTKPMVVETFAQYPPLGRFAVRDM 417          
BLAST of CX288663 vs. ExPASy Swiss-Prot
Match: EF1A1_HORVU (Elongation factor 1-alpha OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 4.192e-54
Identity = 101/111 (90.99%), Postives = 105/111 (94.59%), Query Frame = 1
Query:    1 DLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAXKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDM 333
            DLKRGYVASNSKDDPAK A+NFT+QVIIMNHPGQI NGYAPVLDCHTSHIA KFAEI TKIDRRSGKELE  PKFLKNGDAGFVKMIPTKPMVVETF++YPPLGRFAVRDM
Sbjct:  307 DLKRGYVASNSKDDPAKEAANFTAQVIIMNHPGQISNGYAPVLDCHTSHIAVKFAEIQTKIDRRSGKELEAAPKFLKNGDAGFVKMIPTKPMVVETFAQYPPLGRFAVRDM 417          
BLAST of CX288663 vs. ExPASy Swiss-Prot
Match: EF1A_WHEAT (Elongation factor 1-alpha OS=Triticum aestivum GN=TEF1 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 1.593e-53
Identity = 100/111 (90.09%), Postives = 105/111 (94.59%), Query Frame = 1
Query:    1 DLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAXKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDM 333
            DLKRG+VASNSKDDPAK A+NFTSQVIIMNHPGQIGNGYAPVLDCHTSHIA KFAE++TKIDRRSGKELE  PKFLKNGDAG VKMIPTKPMVVETF+ YPPLGRFAVRDM
Sbjct:  307 DLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELVTKIDRRSGKELEALPKFLKNGDAGIVKMIPTKPMVVETFATYPPLGRFAVRDM 417          
BLAST of CX288663 vs. ExPASy Swiss-Prot
Match: EF1A_ABSGL (Elongation factor 1-alpha OS=Absidia glauca GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 8.761e-44
Identity = 80/111 (72.07%), Postives = 98/111 (88.29%), Query Frame = 1
Query:    1 DLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAXKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDM 333
            D++RG V S+SK+DPAK A +FT+QVI++NHPGQIG GYAPVLDCHT+HIA KFAE+L KIDRRSGK+LE  PKF+K+GD+  VKMIP+KPM VE +++YPPLGRFAVRDM
Sbjct:  317 DIRRGNVCSDSKNDPAKEAGSFTAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFAELLEKIDRRSGKKLEDAPKFVKSGDSAIVKMIPSKPMCVEAYTDYPPLGRFAVRDM 427          
BLAST of CX288663 vs. ExPASy Swiss-Prot
Match: EF1A_TRYBB (Elongation factor 1-alpha OS=Trypanosoma brucei brucei GN=TEF1 PE=1 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 1.494e-43
Identity = 81/111 (72.97%), Postives = 96/111 (86.49%), Query Frame = 1
Query:    1 DLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAXKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDM 333
            D++RG V  N+K+DP K A++FT+QVII+NHPGQIGNGYAPVLDCHTSHIA KFAEI +KIDRRSGKELEK PK +K+GDA  V+M+P KPM VE F++Y PLGRFAVRDM
Sbjct:  307 DIRRGNVCGNTKNDPPKEAADFTAQVIILNHPGQIGNGYAPVLDCHTSHIACKFAEIESKIDRRSGKELEKAPKSIKSGDAAIVRMVPQKPMCVEVFNDYAPLGRFAVRDM 417          
BLAST of CX288663 vs. ExPASy Swiss-Prot
Match: EF1A_STYLE (Elongation factor 1-alpha OS=Stylonychia lemnae GN=EFAA PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.494e-43
Identity = 79/111 (71.17%), Postives = 97/111 (87.39%), Query Frame = 1
Query:    1 DLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAXKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDM 333
            DL+RGYVAS+SK+DPAK  +NF +QVI++NHPGQI  GYAPVLDCHT+HIA KF EI +K+DRRSGK LE+EPKF+K+G+A  V+M+P KPM VE F++YPPLGRFAVRDM
Sbjct:  307 DLRRGYVASDSKNDPAKDTTNFLAQVIVLNHPGQIQKGYAPVLDCHTAHIACKFDEIESKVDRRSGKVLEEEPKFIKSGEAALVRMVPQKPMCVEAFNQYPPLGRFAVRDM 417          
BLAST of CX288663 vs. ExPASy Swiss-Prot
Match: EF1A_SCHCO (Elongation factor 1-alpha OS=Schizophyllum commune GN=TEF1 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.952e-43
Identity = 79/111 (71.17%), Postives = 99/111 (89.19%), Query Frame = 1
Query:    1 DLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAXKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDM 333
            D++RG VAS+SK+DPAK A++F +QVI++NHPGQIG GYAPVLDCHT+HIA KFAE+L KIDRR+GK LE  PKF+K+GDA  VK++P+KPM VE+++EYPPLGRFAVRDM
Sbjct:  317 DIRRGNVASDSKNDPAKEAASFNAQVIVLNHPGQIGAGYAPVLDCHTAHIACKFAELLEKIDRRTGKSLEASPKFVKSGDACIVKLVPSKPMCVESYNEYPPLGRFAVRDM 427          
BLAST of CX288663 vs. ExPASy Swiss-Prot
Match: EF1A_NEUCR (Elongation factor 1-alpha OS=Neurospora crassa GN=tef-1 PE=3 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 1.952e-43
Identity = 78/111 (70.27%), Postives = 97/111 (87.39%), Query Frame = 1
Query:    1 DLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAXKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDM 333
            D++RG VA +SK+DP  GA++FT+QVI++NHPGQ+G GYAPVLDCHT+HIA KFAE+L KIDRR+GK +E  PKF+K+GDA  VKMIP+KPM VE F++YPPLGRFAVRDM
Sbjct:  318 DIRRGNVAGDSKNDPPAGAASFTAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFAELLEKIDRRTGKAVEASPKFIKSGDAAIVKMIPSKPMCVEAFTDYPPLGRFAVRDM 428          
BLAST of CX288663 vs. ExPASy Swiss-Prot
Match: EF1A_SORMA (Elongation factor 1-alpha OS=Sordaria macrospora GN=TEF PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 2.549e-43
Identity = 78/111 (70.27%), Postives = 97/111 (87.39%), Query Frame = 1
Query:    1 DLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAXKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDM 333
            D++RG VA +SK+DP  GA++FT+QVI++NHPGQ+G GYAPVLDCHT+HIA KFAE+L KIDRR+GK +E  PKF+K+GDA  VKMIP+KPM VE F++YPPLGRFAVRDM
Sbjct:  318 DIRRGNVAGDSKNDPPVGAASFTAQVIVLNHPGQVGAGYAPVLDCHTAHIACKFAELLEKIDRRTGKAVETSPKFIKSGDAAIVKMIPSKPMCVEAFTDYPPLGRFAVRDM 428          
The following BLAST results are available for this feature:
BLAST of CX288663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 162
Match NameE-valueIdentityDescription
EF1A_PEA8.447e-5590.99Elongation factor 1-alpha OS=Pisum sativum PE=2 SV... [more]
EF1A2_HORVU4.192e-5490.99Elongation factor 1-alpha OS=Hordeum vulgare GN=BL... [more]
EF1A1_HORVU4.192e-5490.99Elongation factor 1-alpha OS=Hordeum vulgare PE=1 ... [more]
EF1A_WHEAT1.593e-5390.09Elongation factor 1-alpha OS=Triticum aestivum GN=... [more]
EF1A_ABSGL8.761e-4472.07Elongation factor 1-alpha OS=Absidia glauca GN=TEF... [more]
EF1A_TRYBB1.494e-4372.97Elongation factor 1-alpha OS=Trypanosoma brucei br... [more]
EF1A_STYLE1.494e-4371.17Elongation factor 1-alpha OS=Stylonychia lemnae GN... [more]
EF1A_SCHCO1.952e-4371.17Elongation factor 1-alpha OS=Schizophyllum commune... [more]
EF1A_NEUCR1.952e-4370.27Elongation factor 1-alpha OS=Neurospora crassa GN=... [more]
EF1A_SORMA2.549e-4370.27Elongation factor 1-alpha OS=Sordaria macrospora G... [more]

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Properties
Property NameValue
Genbank descriptionC02003A02SK IF1 Citrus clementina cDNA clone C02003A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288663 ID=CX288663; Name=CX288663; organism=Citrus clementina; type=EST; length=335bp
GATCTTAAGCGTGGTTACGTTGCATCTAACTCCAAGGACGATCCCGCCAA
GGGGGCATCCAACTTCACCTCCCAAGTTATCATCATGAACCACCCTGGCC
AGATTGGAAACGGTTATGCACCTGTTCTTGATTGCCACACTTCCCACATA
GCTNTCAAGTTTGCTGAAATCTTGACCAAGATTGACAGGCGATCTGGTAA
GGAGCTGGAGAAGGAGCCCAAATTCTTAAAGAATGGTGATGCTGGGTTTG
TTAAGATGATTCCCACCAAGCCTATGGTTGTGGAAACTTTCTCCGAATAT
CCCCCACTTGGTCGTTTTGCTGTGAGAGACATGCG
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