CX288663

Overview
NameCX288663
Unique NameCX288663
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length335
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14166 contig Ccv1_Contig14166:1007..1341. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288663 vs. ExPASy Swiss-Prot
Match: EF1A1_FELCA (Elongation factor 1-alpha 1 OS=Felis catus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 2.386e-41
Identity = 79/111 (71.17%), Postives = 93/111 (83.78%), Query Frame = 1
Query:    1 DLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAXKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDM 333
            D++RG VA +SK+DP   A+ FT+QVII+NHPGQI  GYAPVLDCHT+HIA KFAE+  KIDRRSGK+LE  PKFLK+GDA  V M+P KPM VE+FS+YPPLGRFAVRDM
Sbjct:  319 DVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDM 429          
BLAST of CX288663 vs. ExPASy Swiss-Prot
Match: EF1A1_CRIGR (Elongation factor 1-alpha 1 OS=Cricetulus griseus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 2.386e-41
Identity = 79/111 (71.17%), Postives = 93/111 (83.78%), Query Frame = 1
Query:    1 DLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAXKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDM 333
            D++RG VA +SK+DP   A+ FT+QVII+NHPGQI  GYAPVLDCHT+HIA KFAE+  KIDRRSGK+LE  PKFLK+GDA  V M+P KPM VE+FS+YPPLGRFAVRDM
Sbjct:  319 DVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDM 429          
BLAST of CX288663 vs. ExPASy Swiss-Prot
Match: EF1A1_BOVIN (Elongation factor 1-alpha 1 OS=Bos taurus GN=EEF1A1 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 2.386e-41
Identity = 79/111 (71.17%), Postives = 93/111 (83.78%), Query Frame = 1
Query:    1 DLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAXKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDM 333
            D++RG VA +SK+DP   A+ FT+QVII+NHPGQI  GYAPVLDCHT+HIA KFAE+  KIDRRSGK+LE  PKFLK+GDA  V M+P KPM VE+FS+YPPLGRFAVRDM
Sbjct:  319 DVRRGNVAGDSKNDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDGPKFLKSGDAAIVDMVPGKPMCVESFSDYPPLGRFAVRDM 429          
BLAST of CX288663 vs. ExPASy Swiss-Prot
Match: EF1A_ARTSA (Elongation factor 1-alpha OS=Artemia salina PE=1 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 3.116e-41
Identity = 73/111 (65.77%), Postives = 95/111 (85.59%), Query Frame = 1
Query:    1 DLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAXKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDM 333
            +L+RGYVAS+SK++PA+G+ +F +QVI++NHPGQI NGY PVLDCHT+HIA KFAEI  K DRR+GK  E EPKF+K+GDA  + ++P+KP+ VE FS++PPLGRFAVRDM
Sbjct:  319 ELRRGYVASDSKNNPARGSQDFFAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEAEPKFIKSGDAAMITLVPSKPLCVEAFSDFPPLGRFAVRDM 429          
BLAST of CX288663 vs. ExPASy Swiss-Prot
Match: EF1AC_PORPU (Elongation factor 1-alpha C OS=Porphyra purpurea GN=TEF-C PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 3.116e-41
Identity = 75/111 (67.57%), Postives = 93/111 (83.78%), Query Frame = 1
Query:    1 DLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAXKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDM 333
            DLKRGYV  +SK+DP KG ++F +QVII+NHPG+I  GYAPVLDCHT+HIA KF+E++ K+DRRSGK+LE  PK +K+GDA  VKM+ +KPM VE F+ YPPLGRFAVRDM
Sbjct:  311 DLKRGYVCGDSKNDPPKGCASFNAQVIILNHPGEIHAGYAPVLDCHTAHIACKFSELILKMDRRSGKKLEDSPKMIKSGDAAMVKMVASKPMCVEAFTSYPPLGRFAVRDM 421          
BLAST of CX288663 vs. ExPASy Swiss-Prot
Match: EF1A3_OSCTI (Elongation factor 1-alpha 3 OS=Oscheius tipulae GN=eft-3 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 3.116e-41
Identity = 76/111 (68.47%), Postives = 93/111 (83.78%), Query Frame = 1
Query:    1 DLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAXKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDM 333
            D++RG V S+SK+DPAK + NFT+QVI+MNHPGQI  GY PVLDCHT+HIA KFAE+  K+DRR+GK  E  PKFLK+GDAG V++IPTKP  VE+F++Y PLGRFAVRDM
Sbjct:  320 DIRRGSVCSDSKNDPAKESKNFTAQVIVMNHPGQISAGYTPVLDCHTAHIACKFAELKEKVDRRTGKSTEASPKFLKSGDAGIVELIPTKPPCVESFTDYAPLGRFAVRDM 430          
BLAST of CX288663 vs. ExPASy Swiss-Prot
Match: EF1A_DANRE (Elongation factor 1-alpha OS=Danio rerio GN=eef1a PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.315e-41
Identity = 78/111 (70.27%), Postives = 92/111 (82.88%), Query Frame = 1
Query:    1 DLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAXKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDM 333
            D++RG VA +SK+DP   A+NF +QVII+NHPGQI  GYAPVLDCHT+HIA KFAE+  KIDRRSGK+LE  PK LK+GDA  V+M+P KPM VE+FS YPPLGRFAVRDM
Sbjct:  319 DIRRGNVAGDSKNDPPMEAANFNAQVIILNHPGQISQGYAPVLDCHTAHIACKFAELKEKIDRRSGKKLEDNPKALKSGDAAIVEMVPGKPMCVESFSTYPPLGRFAVRDM 429          
BLAST of CX288663 vs. ExPASy Swiss-Prot
Match: EF1A_BOMMO (Elongation factor 1-alpha OS=Bombyx mori PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.315e-41
Identity = 73/111 (65.77%), Postives = 94/111 (84.68%), Query Frame = 1
Query:    1 DLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAXKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDM 333
            +L+RGYVA +SK++P KGA++FT+QVI++NHPGQI NGY PVLDCHT+HIA KFAEI  K+DRR+GK  E  PK +K+GDA  V ++P+KP+ VE+F E+PPLGRFAVRDM
Sbjct:  319 ELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDM 429          
BLAST of CX288663 vs. ExPASy Swiss-Prot
Match: EF1A_PLAFK (Elongation factor 1-alpha OS=Plasmodium falciparum (isolate K1 / Thailand) GN=MEF-1 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 9.067e-41
Identity = 74/111 (66.67%), Postives = 95/111 (85.59%), Query Frame = 1
Query:    1 DLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAXKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDM 333
            ++KRGYVAS++K++PAKG S FT+QVII+NHPG+I NGY P+LDCHTSHI+ KF  I +KID+RSGK +E+ PK +K+GD+  V + P KPMVVETF+EYPPLGRFA+RDM
Sbjct:  305 EIKRGYVASDTKNEPAKGCSKFTAQVIILNHPGEIKNGYTPLLDCHTSHISCKFLNIDSKIDKRSGKVVEENPKAIKSGDSALVSLEPKKPMVVETFTEYPPLGRFAIRDM 415          
BLAST of CX288663 vs. ExPASy Swiss-Prot
Match: EF1A_CAEEL (Elongation factor 1-alpha OS=Caenorhabditis elegans GN=eft-3 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.184e-40
Identity = 76/111 (68.47%), Postives = 93/111 (83.78%), Query Frame = 1
Query:    1 DLKRGYVASNSKDDPAKGASNFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAXKFAEILTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDM 333
            D++RG V S+SK DPAK A  F +QVIIMNHPGQI NGY PVLDCHT+HIA KF E+  K+DRR+GK++E  PKFLK+GDAG V++IPTKP+ VE+F++Y PLGRFAVRDM
Sbjct:  319 DIRRGSVCSDSKQDPAKEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDM 429          
The following BLAST results are available for this feature:
BLAST of CX288663 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 162
Match NameE-valueIdentityDescription
EF1A1_FELCA2.386e-4171.17Elongation factor 1-alpha 1 OS=Felis catus GN=EEF1... [more]
EF1A1_CRIGR2.386e-4171.17Elongation factor 1-alpha 1 OS=Cricetulus griseus ... [more]
EF1A1_BOVIN2.386e-4171.17Elongation factor 1-alpha 1 OS=Bos taurus GN=EEF1A... [more]
EF1A_ARTSA3.116e-4165.77Elongation factor 1-alpha OS=Artemia salina PE=1 S... [more]
EF1AC_PORPU3.116e-4167.57Elongation factor 1-alpha C OS=Porphyra purpurea G... [more]
EF1A3_OSCTI3.116e-4168.47Elongation factor 1-alpha 3 OS=Oscheius tipulae GN... [more]
EF1A_DANRE5.315e-4170.27Elongation factor 1-alpha OS=Danio rerio GN=eef1a ... [more]
EF1A_BOMMO5.315e-4165.77Elongation factor 1-alpha OS=Bombyx mori PE=2 SV=1[more]
EF1A_PLAFK9.067e-4166.67Elongation factor 1-alpha OS=Plasmodium falciparum... [more]
EF1A_CAEEL1.184e-4068.47Elongation factor 1-alpha OS=Caenorhabditis elegan... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02003A02SK IF1 Citrus clementina cDNA clone C02003A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288663 ID=CX288663; Name=CX288663; organism=Citrus clementina; type=EST; length=335bp
GATCTTAAGCGTGGTTACGTTGCATCTAACTCCAAGGACGATCCCGCCAA
GGGGGCATCCAACTTCACCTCCCAAGTTATCATCATGAACCACCCTGGCC
AGATTGGAAACGGTTATGCACCTGTTCTTGATTGCCACACTTCCCACATA
GCTNTCAAGTTTGCTGAAATCTTGACCAAGATTGACAGGCGATCTGGTAA
GGAGCTGGAGAAGGAGCCCAAATTCTTAAAGAATGGTGATGCTGGGTTTG
TTAAGATGATTCCCACCAAGCCTATGGTTGTGGAAACTTTCTCCGAATAT
CCCCCACTTGGTCGTTTTGCTGTGAGAGACATGCG
back to top