CX288666

Overview
NameCX288666
Unique NameCX288666
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length342
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HS7C4_DICDI (Heat shock cognate 70 kDa protein 4 OS=Dictyostelium discoideum GN=DDB_G0293678 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 9.951e-40
Identity = 77/113 (68.14%), Postives = 93/113 (82.30%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            LI DLGGGTFDVSL  IE+GI+E+  + GD HLGG DF+NR++NHF+ EFK K+KKDI+ N RA+ RLRTACERAKRTLS ++  +IEIDSLY+GIDFYSTITR  FE+L  D
Sbjct:  196 LIIDLGGGTFDVSLFNIEDGIYEILLSGGDNHLGGADFNNRLMNHFIDEFKLKHKKDITNNQRAIFRLRTACERAKRTLSISSLASIEIDSLYDGIDFYSTITRTHFEKLCSD 308          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP75_KLUMA (Heat shock protein SSB OS=Kluyveromyces marxianus GN=SSB PE=3 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 2.217e-39
Identity = 77/111 (69.37%), Postives = 94/111 (84.68%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELN 335
            LIFDLGGGTFDVSLL I  G++ VK+T+G+THLGG+DFD  ++ HF  EFK+K   DISG+ RALRRLRTA ERAKRTLSS AQTT+E+DSL++G DF +TITRARFE++N
Sbjct:  199 LIFDLGGGTFDVSLLHIAGGVYTVKSTSGNTHLGGQDFDTNLLEHFKTEFKKKTGADISGDARALRRLRTAAERAKRTLSSVAQTTVEVDSLFDGEDFEATITRARFEDIN 309          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP75_KLULA (Heat shock protein SSB OS=Kluyveromyces lactis GN=SSB PE=3 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 2.895e-39
Identity = 77/111 (69.37%), Postives = 94/111 (84.68%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELN 335
            LIFDLGGGTFDVSLL I  G++ VK+T+G+THLGG+DFD  ++ HF  EFK+K   DISG+ RALRRLRTA ERAKRTLSS AQTT+E+DSL++G DF +TITRARFE++N
Sbjct:  199 LIFDLGGGTFDVSLLHIAGGVYTVKSTSGNTHLGGQDFDTNLLEHFKTEFKKKTGLDISGDARALRRLRTAAERAKRTLSSVAQTTVEVDSLFDGEDFEATITRARFEDIN 309          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP75_ASHGO (Heat shock protein SSB OS=Ashbya gossypii GN=SSB PE=3 SV=3)

HSP 1 Score: 159.073 bits (401), Expect = 6.450e-39
Identity = 76/111 (68.47%), Postives = 93/111 (83.78%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELN 335
            LIFDLGGGTFDVSLL I  G++ VK+T+G+THLGG+DFD  ++ HF  EFK+K   DISG+ RALRRLRTA ERAKRTLSS  QTT+E+DSL+EG DF ++ITRARFE++N
Sbjct:  199 LIFDLGGGTFDVSLLNIAGGVYTVKSTSGNTHLGGQDFDTNLLEHFKAEFKKKTGLDISGDARALRRLRTAAERAKRTLSSVTQTTVEVDSLFEGEDFETSITRARFEDIN 309          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP70_MIMIV (Heat shock 70 kDa protein homolog OS=Acanthamoeba polyphaga mimivirus GN=HSP70 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.100e-38
Identity = 75/113 (66.37%), Postives = 98/113 (86.73%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            LIFD+GGGT DV+LL++E+G+F+V+AT+G+T LGGEDFDNR+V   V++FKRK K D++ + +ALRRLRTACERAKR LSS+ QTTIE+DSL+EGID+  T+TRA+FEEL  D
Sbjct:  196 LIFDMGGGTHDVTLLSLEDGLFQVRATSGNTKLGGEDFDNRLVTWCVEDFKRKYKTDLNQSAKALRRLRTACERAKRALSSSTQTTIEVDSLFEGIDYNVTLTRAKFEELCSD 308          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP76_YEAST (Heat shock protein SSB2 OS=Saccharomyces cerevisiae GN=SSB2 PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 7.131e-38
Identity = 75/111 (67.57%), Postives = 92/111 (82.88%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELN 335
            LIFDLGGGTFDVSLL I  G++ VK+T+G+THLGG+DFD  ++ HF  EFK+K   DIS + RALRRLRTA ERAKRTLSS  QTT+E+DSL++G DF S++TRARFE+LN
Sbjct:  199 LIFDLGGGTFDVSLLHIAGGVYTVKSTSGNTHLGGQDFDTNLLEHFKAEFKKKTGLDISDDARALRRLRTAAERAKRTLSSVTQTTVEVDSLFDGEDFESSLTRARFEDLN 309          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP75_YEAST (Heat shock protein SSB1 OS=Saccharomyces cerevisiae GN=SSB1 PE=1 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 7.131e-38
Identity = 75/111 (67.57%), Postives = 92/111 (82.88%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELN 335
            LIFDLGGGTFDVSLL I  G++ VK+T+G+THLGG+DFD  ++ HF  EFK+K   DIS + RALRRLRTA ERAKRTLSS  QTT+E+DSL++G DF S++TRARFE+LN
Sbjct:  199 LIFDLGGGTFDVSLLHIAGGVYTVKSTSGNTHLGGQDFDTNLLEHFKAEFKKKTGLDISDDARALRRLRTAAERAKRTLSSVTQTTVEVDSLFDGEDFESSLTRARFEDLN 309          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP75_CANGA (Heat shock protein SSB OS=Candida glabrata GN=SSB1 PE=3 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 7.131e-38
Identity = 75/111 (67.57%), Postives = 92/111 (82.88%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELN 335
            LIFDLGGGTFDVSLL I  G++ VK+T+G+THLGG+DFD  ++ HF  EFK+K   DIS + RALRRLRTA ERAKRTLSS  QTT+E+DSL+EG DF +++TRARFE+LN
Sbjct:  199 LIFDLGGGTFDVSLLHIAGGVYTVKSTSGNTHLGGQDFDTNLLEHFKGEFKKKTGLDISNDARALRRLRTAAERAKRTLSSVTQTTVEVDSLFEGEDFEASLTRARFEDLN 309          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP75_KLUDE (Heat shock protein SSB OS=Kluyveromyces delphensis GN=SSB PE=3 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 2.075e-37
Identity = 73/111 (65.77%), Postives = 92/111 (82.88%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELN 335
            LIFDLGGGTFDVSLL I  G++ VK+T+G+THLGG+DFD  ++ HF  +FK+K   DIS + RALRRLRTA ERAKRTLSS  QTT+E+DSL++G DF +++TRARFE+LN
Sbjct:  199 LIFDLGGGTFDVSLLHIAGGVYTVKSTSGNTHLGGQDFDTNLLEHFKSDFKKKTGLDISNDARALRRLRTAAERAKRTLSSVTQTTVEVDSLFDGEDFEASLTRARFEDLN 309          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: BIP_SPIOL (Luminal-binding protein OS=Spinacia oleracea GN=HSC70 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.030e-36
Identity = 72/113 (63.72%), Postives = 91/113 (80.53%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            L+FDLGGGTFDVS+LTI+ G+FEV AT GDTHLGGEDFD R++ +F++  K+K+ KDIS + RAL +LR  CERAKR LSS  Q  +EI+SL++G+DF   +TRARFEELN D
Sbjct:  228 LVFDLGGGTFDVSVLTIDNGVFEVLATNGDTHLGGEDFDQRLMEYFIKLIKKKHTKDISKDNRALGKLRRECERAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNND 340          
The following BLAST results are available for this feature:
BLAST of CX288666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HS7C4_DICDI9.951e-4068.14Heat shock cognate 70 kDa protein 4 OS=Dictyosteli... [more]
HSP75_KLUMA2.217e-3969.37Heat shock protein SSB OS=Kluyveromyces marxianus ... [more]
HSP75_KLULA2.895e-3969.37Heat shock protein SSB OS=Kluyveromyces lactis GN=... [more]
HSP75_ASHGO6.450e-3968.47Heat shock protein SSB OS=Ashbya gossypii GN=SSB P... [more]
HSP70_MIMIV1.100e-3866.37Heat shock 70 kDa protein homolog OS=Acanthamoeba ... [more]
HSP76_YEAST7.131e-3867.57Heat shock protein SSB2 OS=Saccharomyces cerevisia... [more]
HSP75_YEAST7.131e-3867.57Heat shock protein SSB1 OS=Saccharomyces cerevisia... [more]
HSP75_CANGA7.131e-3867.57Heat shock protein SSB OS=Candida glabrata GN=SSB1... [more]
HSP75_KLUDE2.075e-3765.77Heat shock protein SSB OS=Kluyveromyces delphensis... [more]
BIP_SPIOL1.030e-3663.72Luminal-binding protein OS=Spinacia oleracea GN=HS... [more]

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Properties
Property NameValue
Genbank descriptionC02003A05SK IF1 Citrus clementina cDNA clone C02003A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288666 ID=CX288666; Name=CX288666; organism=Citrus clementina; type=EST; length=342bp
TGTTGATCTTTGATCTGGGTGGCGGTACTTTTGATGTGTCGTTGCTCACT
ATTGAGGAGGGAATCTTTGAAGTGAAGGCTACTGCTGGAGACACTCATCT
TGGTGGTGAGGATTTTGATAACAGAATGGTGAATCATTTTGTTCAGGAGT
TTAAGAGGAAGAACAAGAAGGATATTAGCGGTAACCCTAGAGCTCTTAGG
AGATTGAGGACTGCTTGTGAGAGAGCGAAGAGGACTCTCTCCTCTACTGC
CCAGACTACAATTGAGATTGATTCTTTGTATGAGGGTATTGACTTCTACT
CAACCATAACTCGTGCCAGATTTGAGGAGTTGAACATGGATC
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