CX288666 | Citrus Genome Database

Overview


Name	CX288666
Unique Name	CX288666
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	342

Libraries


Library Name	Type
IF1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig10212	contig	Ccv1_Contig10212:710..1052.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: GRP78_SPETR (78 kDa glucose-regulated protein OS=Spermophilus tridecemlineatus GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.756e-36
Identity = 72/113 (63.72%), Postives = 90/113 (79.65%), Query Frame = 3

Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            L+FDLGGGTFDVSLLTI+ G+FEV AT GDTHLGGEDFD R++ HF++ +K+K  KD+  + RA+++LR   E+AKR LSS  Q  IEI+S YEG DF  T+TRA+FEELNMD
Sbjct:  221 LVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRVMEHFIKLYKKKTGKDVRKDNRAVQKLRREVEKAKRALSSQHQARIEIESFYEGEDFSETLTRAKFEELNMD 333

[Close]

BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: GRP78_PONAB (78 kDa glucose-regulated protein OS=Pongo abelii GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.756e-36
Identity = 72/113 (63.72%), Postives = 90/113 (79.65%), Query Frame = 3

Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            L+FDLGGGTFDVSLLTI+ G+FEV AT GDTHLGGEDFD R++ HF++ +K+K  KD+  + RA+++LR   E+AKR LSS  Q  IEI+S YEG DF  T+TRA+FEELNMD
Sbjct:  221 LVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRVMEHFIKLYKKKTGKDVRKDNRAVQKLRREVEKAKRALSSQHQARIEIESFYEGEDFSETLTRAKFEELNMD 333

[Close]

BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: GRP78_HUMAN (78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 1.756e-36
Identity = 72/113 (63.72%), Postives = 90/113 (79.65%), Query Frame = 3

Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            L+FDLGGGTFDVSLLTI+ G+FEV AT GDTHLGGEDFD R++ HF++ +K+K  KD+  + RA+++LR   E+AKR LSS  Q  IEI+S YEG DF  T+TRA+FEELNMD
Sbjct:  221 LVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRVMEHFIKLYKKKTGKDVRKDNRAVQKLRREVEKAKRALSSQHQARIEIESFYEGEDFSETLTRAKFEELNMD 333

[Close]

BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: GRP78_BOVIN (78 kDa glucose-regulated protein OS=Bos taurus GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.756e-36
Identity = 72/113 (63.72%), Postives = 90/113 (79.65%), Query Frame = 3

Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            L+FDLGGGTFDVSLLTI+ G+FEV AT GDTHLGGEDFD R++ HF++ +K+K  KD+  + RA+++LR   E+AKR LSS  Q  IEI+S YEG DF  T+TRA+FEELNMD
Sbjct:  222 LVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRVMEHFIKLYKKKTGKDVRKDNRAVQKLRREVEKAKRALSSQHQARIEIESFYEGEDFSETLTRAKFEELNMD 334

[Close]

BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: GRP78_ECHMU (78 kDa glucose-regulated protein OS=Echinococcus multilocularis GN=GRP78 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.294e-36
Identity = 72/113 (63.72%), Postives = 93/113 (82.30%), Query Frame = 3

Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            L+FDLGGGTFDVSLLTI+ G+FEV AT+GDTHLGGEDFD R++++FV+ +K+K  KDI+ + RA+++LR   E+AKRTLS+   T IEID+L+EG DF   +TRARFEELN D
Sbjct:  220 LVFDLGGGTFDVSLLTIDNGVFEVVATSGDTHLGGEDFDQRLIDYFVKLYKKKEGKDITKDDRAVQKLRREVEKAKRTLSTEHSTMIEIDNLFEGKDFSEPLTRARFEELNND 332

[Close]

BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: GRP78_ECHGR (78 kDa glucose-regulated protein OS=Echinococcus granulosus GN=GRP78 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.294e-36
Identity = 72/113 (63.72%), Postives = 93/113 (82.30%), Query Frame = 3

Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            L+FDLGGGTFDVSLLTI+ G+FEV AT+GDTHLGGEDFD R++++FV+ +K+K  KDI+ + RA+++LR   E+AKRTLS+   T IEID+L+EG DF   +TRARFEELN D
Sbjct:  220 LVFDLGGGTFDVSLLTIDNGVFEVVATSGDTHLGGEDFDQRLIDYFVKLYKKKEGKDITKDDRAVQKLRREVEKAKRTLSTEHSTMIEIDNLFEGKDFSEPLTRARFEELNND 332

[Close]

BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: GRP78_ASHGO (78 kDa glucose-regulated protein homolog OS=Ashbya gossypii GN=KAR2 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.294e-36
Identity = 68/113 (60.18%), Postives = 92/113 (81.42%), Query Frame = 3

Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            +++DLGGGTFDVSLL+IE G+FEV+ATAGDTHLGGEDFD ++V HF++ FK+K+  D+S N +A+ +L+   E+AKR LSS   T +EIDS  +GIDF  T+TRA+FEE+N+D
Sbjct:  238 VVYDLGGGTFDVSLLSIENGVFEVQATAGDTHLGGEDFDYKLVRHFLKVFKKKHGVDVSSNAKAMAKLKREAEKAKRALSSQMSTRVEIDSFVDGIDFSETLTRAKFEEMNLD 350

[Close]

BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: BIP1_ARATH (Luminal-binding protein 1 OS=Arabidopsis thaliana GN=At5g28540 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 2.996e-36
Identity = 70/113 (61.95%), Postives = 93/113 (82.30%), Query Frame = 3

Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            L+FDLGGGTFDVS+LTI+ G+FEV +T GDTHLGGEDFD+R++ +F++  K+K++KDIS + +AL +LR  CERAKR LSS  Q  +EI+SL++G+DF   +TRARFEELN D
Sbjct:  227 LVFDLGGGTFDVSVLTIDNGVFEVLSTNGDTHLGGEDFDHRVMEYFIKLIKKKHQKDISKDNKALGKLRRECERAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNND 339

[Close]

BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: GRP78_XENLA (78 kDa glucose-regulated protein OS=Xenopus laevis GN=hspa5 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 3.913e-36
Identity = 70/113 (61.95%), Postives = 91/113 (80.53%), Query Frame = 3

Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            L+FDLGGGTFDVSLLTI+ G+FEV AT GDTHLGGEDFD R++ HF++ +K+K  KD+  + RA+++LR   E+AKR LS+  Q+ IEI+S +EG DF  T+TRA+FEELNMD
Sbjct:  222 LVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRVMEHFIKLYKKKTGKDVRADKRAVQKLRREVEKAKRALSAQHQSRIEIESFFEGEDFSETLTRAKFEELNMD 334

[Close]

BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: GRP78_RAT (78 kDa glucose-regulated protein OS=Rattus norvegicus GN=Hspa5 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.111e-36
Identity = 71/113 (62.83%), Postives = 90/113 (79.65%), Query Frame = 3

Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            L+FDLGGGTFDVSLLTI+ G+FEV AT GDTHLGGEDFD R++ HF++ +K+K  KD+  + RA+++LR   E+AKR LSS  Q  IEI+S +EG DF  T+TRA+FEELNMD
Sbjct:  221 LVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRVMEHFIKLYKKKTGKDVRKDNRAVQKLRREVEKAKRALSSQHQARIEIESFFEGEDFSETLTRAKFEELNMD 333

The following BLAST results are available for this feature:

BLAST of CX288666 vs. ExPASy Swiss-Prot

BLAST of CX288666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
GRP78_SPETR	1.756e-36	63.72	78 kDa glucose-regulated protein OS=Spermophilus t...	[more]
GRP78_PONAB	1.756e-36	63.72	78 kDa glucose-regulated protein OS=Pongo abelii G...	[more]
GRP78_HUMAN	1.756e-36	63.72	78 kDa glucose-regulated protein OS=Homo sapiens G...	[more]
GRP78_BOVIN	1.756e-36	63.72	78 kDa glucose-regulated protein OS=Bos taurus GN=...	[more]
GRP78_ECHMU	2.294e-36	63.72	78 kDa glucose-regulated protein OS=Echinococcus m...	[more]
GRP78_ECHGR	2.294e-36	63.72	78 kDa glucose-regulated protein OS=Echinococcus g...	[more]
GRP78_ASHGO	2.294e-36	60.18	78 kDa glucose-regulated protein homolog OS=Ashbya...	[more]
BIP1_ARATH	2.996e-36	61.95	Luminal-binding protein 1 OS=Arabidopsis thaliana ...	[more]
GRP78_XENLA	3.913e-36	61.95	78 kDa glucose-regulated protein OS=Xenopus laevis...	[more]
GRP78_RAT	5.111e-36	62.83	78 kDa glucose-regulated protein OS=Rattus norvegi...	[more]

Pages

Properties


Property Name	Value
Genbank description	C02003A05SK IF1 Citrus clementina cDNA clone C02003A05, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX288666 ID=CX288666; Name=CX288666; organism=Citrus clementina; type=EST; length=342bp
TGTTGATCTTTGATCTGGGTGGCGGTACTTTTGATGTGTCGTTGCTCACT
ATTGAGGAGGGAATCTTTGAAGTGAAGGCTACTGCTGGAGACACTCATCT
TGGTGGTGAGGATTTTGATAACAGAATGGTGAATCATTTTGTTCAGGAGT
TTAAGAGGAAGAACAAGAAGGATATTAGCGGTAACCCTAGAGCTCTTAGG
AGATTGAGGACTGCTTGTGAGAGAGCGAAGAGGACTCTCTCCTCTACTGC
CCAGACTACAATTGAGATTGATTCTTTGTATGAGGGTATTGACTTCTACT
CAACCATAACTCGTGCCAGATTTGAGGAGTTGAACATGGATC