CX288666

Overview
NameCX288666
Unique NameCX288666
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length342
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_PORHA (Chaperone protein dnaK OS=Porphyra haitanensis GN=dnaK PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.463e-23
Identity = 53/114 (46.49%), Postives = 78/114 (68.42%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYSTITRARFEEL 332
            L+FDLGGGTFDVS+L + +G+FEV +T+GDTHLGG+DFD ++V   +++FK+    D++ + +AL+RL  A E+AK  LS+  QT I +  +    D       T+TR +FEEL
Sbjct:  189 LVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDQQIVEWLIKDFKQNEGIDLAKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQDGPKHLEKTVTRGKFEEL 302          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_MEGEL (Chaperone protein dnaK (Fragment) OS=Megasphaera elsdenii GN=dnaK PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.463e-23
Identity = 55/119 (46.22%), Postives = 80/119 (67.23%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLY------EGIDFYSTITRARFEELNMD 341
            L+FDLGGGTFDVS+L + +G+FEVKAT G+THLGG+DFDN+++   + EFK++   D+S +  A +RL+ A E+AK  LS+   T I +  +       + +D   T+TRA+F EL  D
Sbjct:  166 LVFDLGGGTFDVSILELGDGVFEVKATNGNTHLGGDDFDNKVMEWMISEFKKETGIDLSQDKMAEQRLKEAAEKAKIELSTVLSTNINLPFITADATGPKHLDL--TLTRAKFNELTED 282          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_LEPBP (Chaperone protein dnaK OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=dnaK PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.463e-23
Identity = 51/113 (45.13%), Postives = 77/113 (68.14%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYSTITRARFEEL 332
            ++DLGGGTFDVS+L + +G+FEVK+T GDTHLGG+DFDN ++   + EFK++   DISG+   ++RL+ A E+AK  LS T+ T I +  +            T+T+A+F+E+
Sbjct:  192 VYDLGGGTFDVSILELGDGVFEVKSTNGDTHLGGDDFDNVVMQWMIDEFKKQTGIDISGDKNTVQRLKEAAEKAKIELSGTSSTQINLPFITADASGPKHLDMTLTKAKFDEI 304          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_LEPBA (Chaperone protein dnaK OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=dnaK PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.463e-23
Identity = 51/113 (45.13%), Postives = 77/113 (68.14%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYSTITRARFEEL 332
            ++DLGGGTFDVS+L + +G+FEVK+T GDTHLGG+DFDN ++   + EFK++   DISG+   ++RL+ A E+AK  LS T+ T I +  +            T+T+A+F+E+
Sbjct:  192 VYDLGGGTFDVSILELGDGVFEVKSTNGDTHLGGDDFDNVVMQWMIDEFKKQTGIDISGDKNTVQRLKEAAEKAKIELSGTSSTQINLPFITADASGPKHLDMTLTKAKFDEI 304          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_LACLA (Chaperone protein dnaK OS=Lactococcus lactis subsp. lactis GN=dnaK PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 8.463e-23
Identity = 52/117 (44.44%), Postives = 79/117 (67.52%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEG----IDFYSTITRARFEELNMD 341
            L+FDLGGGTFDVS+L + +G+F+V ATAG+  LGG+DFD ++++  V EFK++N  D++ +  AL+RL+ A E+AK+ LS    T I +  +  G    +     +TRA+F+EL  D
Sbjct:  165 LVFDLGGGTFDVSILELGDGVFDVLATAGNNKLGGDDFDQKIIDWMVAEFKKENGIDLAQDKMALQRLKDAAEKAKKDLSGVTTTQISLPFITAGAAGPLHLEMALTRAKFDELTHD 281          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_PORYE (Chaperone protein dnaK OS=Porphyra yezoensis GN=dnaK PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.105e-22
Identity = 53/114 (46.49%), Postives = 77/114 (67.54%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYSTITRARFEEL 332
            L+FDLGGGTFDVS+L + +G+FEV +T+GDTHLGG+DFD ++V   +++FK+    D+  + +AL+RL  A E+AK  LS+  QT I +  +    D       T+TR +FEEL
Sbjct:  189 LVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDQQIVEWLIKDFKQNEGIDLGKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQDGPKHLEKTVTRGKFEEL 302          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_MYCA1 (Chaperone protein dnaK OS=Mycobacterium avium (strain 104) GN=dnaK PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.105e-22
Identity = 55/118 (46.61%), Postives = 79/118 (66.95%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIE-----IDSLYEGIDFYSTITRARFEELNMD 341
            L+FDLGGGTFDVSLL I EG+ EV+AT+GD HLGG+D+D+R+VN  V +FK  +  D++ +  A++RLR A E+AK  LSS+  T+I      +D+    +     +TRA F+ +  D
Sbjct:  167 LVFDLGGGTFDVSLLEIGEGVVEVRATSGDNHLGGDDWDDRIVNWLVDKFKGTSGIDLTKDKMAMQRLREAAEKAKIELSSSQSTSINLPYITVDADKNPLFLDEQLTRAEFQRITQD 284          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_MESSB (Chaperone protein dnaK OS=Mesorhizobium sp. (strain BNC1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.105e-22
Identity = 55/116 (47.41%), Postives = 77/116 (66.38%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEG----IDFYSTITRARFEELNMD 341
            ++DLGGGTFD+S+L I +G+FEVK+T GDT LGGEDFD R+VN+   EFK++   D+  +  AL+RL+ A E+AK  LSS++QT I +  +             +TRA+FE L  D
Sbjct:  191 VYDLGGGTFDISILEIGDGVFEVKSTNGDTFLGGEDFDMRLVNYLADEFKKEQGIDLKNDKLALQRLKEAAEKAKIELSSSSQTEINLPFITADQTGPKHLAIKLTRAKFESLVED 306          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_LACLS (Chaperone protein dnaK OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=dnaK PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.105e-22
Identity = 52/117 (44.44%), Postives = 78/117 (66.67%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEG----IDFYSTITRARFEELNMD 341
            L+FDLGGGTFDVS+L + +G+F+V ATAG+  LGG+DFD ++++  V EFK++N  D+  +  AL+RL+ A E+AK+ LS    T I +  +  G    +     +TRA+F+EL  D
Sbjct:  165 LVFDLGGGTFDVSILELGDGVFDVLATAGNNKLGGDDFDQKIIDWMVAEFKKENGIDLGQDKMALQRLKDAAEKAKKDLSGVTTTQISLPFITAGAAGPLHLEMALTRAKFDELTHD 281          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_LACLM (Chaperone protein dnaK OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=dnaK PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.105e-22
Identity = 52/117 (44.44%), Postives = 78/117 (66.67%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEG----IDFYSTITRARFEELNMD 341
            L+FDLGGGTFDVS+L + +G+F+V ATAG+  LGG+DFD ++++  V EFK++N  D+  +  AL+RL+ A E+AK+ LS    T I +  +  G    +     +TRA+F+EL  D
Sbjct:  165 LVFDLGGGTFDVSILELGDGVFDVLATAGNNKLGGDDFDQKIIDWMVAEFKKENGIDLGQDKMALQRLKDAAEKAKKDLSGVTTTQISLPFITAGAAGPLHLEMALTRAKFDELTHD 281          
The following BLAST results are available for this feature:
BLAST of CX288666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_PORHA8.463e-2346.49Chaperone protein dnaK OS=Porphyra haitanensis GN=... [more]
DNAK_MEGEL8.463e-2346.22Chaperone protein dnaK (Fragment) OS=Megasphaera e... [more]
DNAK_LEPBP8.463e-2345.13Chaperone protein dnaK OS=Leptospira biflexa serov... [more]
DNAK_LEPBA8.463e-2345.13Chaperone protein dnaK OS=Leptospira biflexa serov... [more]
DNAK_LACLA8.463e-2344.44Chaperone protein dnaK OS=Lactococcus lactis subsp... [more]
DNAK_PORYE1.105e-2246.49Chaperone protein dnaK OS=Porphyra yezoensis GN=dn... [more]
DNAK_MYCA11.105e-2246.61Chaperone protein dnaK OS=Mycobacterium avium (str... [more]
DNAK_MESSB1.105e-2247.41Chaperone protein dnaK OS=Mesorhizobium sp. (strai... [more]
DNAK_LACLS1.105e-2244.44Chaperone protein dnaK OS=Lactococcus lactis subsp... [more]
DNAK_LACLM1.105e-2244.44Chaperone protein dnaK OS=Lactococcus lactis subsp... [more]

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Properties
Property NameValue
Genbank descriptionC02003A05SK IF1 Citrus clementina cDNA clone C02003A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288666 ID=CX288666; Name=CX288666; organism=Citrus clementina; type=EST; length=342bp
TGTTGATCTTTGATCTGGGTGGCGGTACTTTTGATGTGTCGTTGCTCACT
ATTGAGGAGGGAATCTTTGAAGTGAAGGCTACTGCTGGAGACACTCATCT
TGGTGGTGAGGATTTTGATAACAGAATGGTGAATCATTTTGTTCAGGAGT
TTAAGAGGAAGAACAAGAAGGATATTAGCGGTAACCCTAGAGCTCTTAGG
AGATTGAGGACTGCTTGTGAGAGAGCGAAGAGGACTCTCTCCTCTACTGC
CCAGACTACAATTGAGATTGATTCTTTGTATGAGGGTATTGACTTCTACT
CAACCATAACTCGTGCCAGATTTGAGGAGTTGAACATGGATC
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