CX288666

Overview
NameCX288666
Unique NameCX288666
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length342
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_CLOBM (Chaperone protein dnaK OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=dnaK PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.105e-22
Identity = 54/119 (45.38%), Postives = 79/119 (66.39%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLY------EGIDFYSTITRARFEELNMD 341
            L++DLGGGTFDVS+L + +G+FEVKAT GDT LGG+DFD +++++  + FK +N  D+  +  A++RL+ A E+AK  LSS  QT I +  +       + ID    +TRA+F EL  D
Sbjct:  167 LVYDLGGGTFDVSILELGDGVFEVKATNGDTKLGGDDFDQKLIDYIAETFKAENGIDLRNDKMAIQRLKEAAEKAKIELSSATQTNINLPFITADATGPKHIDM--NLTRAKFNELTHD 283          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_CLOBL (Chaperone protein dnaK OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=dnaK PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.105e-22
Identity = 54/119 (45.38%), Postives = 79/119 (66.39%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLY------EGIDFYSTITRARFEELNMD 341
            L++DLGGGTFDVS+L + +G+FEVKAT GDT LGG+DFD +++++  + FK +N  D+  +  A++RL+ A E+AK  LSS  QT I +  +       + ID    +TRA+F EL  D
Sbjct:  167 LVYDLGGGTFDVSILELGDGVFEVKATNGDTKLGGDDFDQKLIDYIAETFKAENGIDLRNDKMAIQRLKEAAEKAKIELSSATQTNINLPFITADATGPKHIDM--NLTRAKFNELTHD 283          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_CLOBK (Chaperone protein dnaK OS=Clostridium botulinum (strain Okra / Type B1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.105e-22
Identity = 54/119 (45.38%), Postives = 79/119 (66.39%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLY------EGIDFYSTITRARFEELNMD 341
            L++DLGGGTFDVS+L + +G+FEVKAT GDT LGG+DFD +++++  + FK +N  D+  +  A++RL+ A E+AK  LSS  QT I +  +       + ID    +TRA+F EL  D
Sbjct:  167 LVYDLGGGTFDVSILELGDGVFEVKATNGDTKLGGDDFDQKLIDYIAETFKAENGIDLRNDKMAIQRLKEAAEKAKIELSSATQTNINLPFITADATGPKHIDM--NLTRAKFNELTHD 283          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_CLOBJ (Chaperone protein dnaK OS=Clostridium botulinum (strain Kyoto / Type A2) GN=dnaK PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.105e-22
Identity = 54/119 (45.38%), Postives = 79/119 (66.39%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLY------EGIDFYSTITRARFEELNMD 341
            L++DLGGGTFDVS+L + +G+FEVKAT GDT LGG+DFD +++++  + FK +N  D+  +  A++RL+ A E+AK  LSS  QT I +  +       + ID    +TRA+F EL  D
Sbjct:  167 LVYDLGGGTFDVSILELGDGVFEVKATNGDTKLGGDDFDQKLIDYIAETFKAENGIDLRNDKMAIQRLKEAAEKAKIELSSATQTNINLPFITADATGPKHIDM--NLTRAKFNELTHD 283          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_CLOBH (Chaperone protein dnaK OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=dnaK PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.105e-22
Identity = 54/119 (45.38%), Postives = 79/119 (66.39%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLY------EGIDFYSTITRARFEELNMD 341
            L++DLGGGTFDVS+L + +G+FEVKAT GDT LGG+DFD +++++  + FK +N  D+  +  A++RL+ A E+AK  LSS  QT I +  +       + ID    +TRA+F EL  D
Sbjct:  167 LVYDLGGGTFDVSILELGDGVFEVKATNGDTKLGGDDFDQKLIDYIAETFKAENGIDLRNDKMAIQRLKEAAEKAKIELSSATQTNINLPFITADATGPKHIDM--NLTRAKFNELTHD 283          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_CLOB6 (Chaperone protein dnaK OS=Clostridium botulinum (strain 657 / Type Ba4) GN=dnaK PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.105e-22
Identity = 54/119 (45.38%), Postives = 79/119 (66.39%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLY------EGIDFYSTITRARFEELNMD 341
            L++DLGGGTFDVS+L + +G+FEVKAT GDT LGG+DFD +++++  + FK +N  D+  +  A++RL+ A E+AK  LSS  QT I +  +       + ID    +TRA+F EL  D
Sbjct:  167 LVYDLGGGTFDVSILELGDGVFEVKATNGDTKLGGDDFDQKLIDYIAETFKAENGIDLRNDKMAIQRLKEAAEKAKIELSSATQTNINLPFITADATGPKHIDM--NLTRAKFNELTHD 283          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_CLOB1 (Chaperone protein dnaK OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=dnaK PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.105e-22
Identity = 54/119 (45.38%), Postives = 79/119 (66.39%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLY------EGIDFYSTITRARFEELNMD 341
            L++DLGGGTFDVS+L + +G+FEVKAT GDT LGG+DFD +++++  + FK +N  D+  +  A++RL+ A E+AK  LSS  QT I +  +       + ID    +TRA+F EL  D
Sbjct:  167 LVYDLGGGTFDVSILELGDGVFEVKATNGDTKLGGDDFDQKLIDYIAETFKAENGIDLRNDKMAIQRLKEAAEKAKIELSSATQTNINLPFITADATGPKHIDM--NLTRAKFNELTHD 283          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_AZOC5 (Chaperone protein dnaK OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=dnaK PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.105e-22
Identity = 56/116 (48.28%), Postives = 75/116 (64.66%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYSTITRARFEELNMD 341
            ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFD R+VN+   EFK++   D+  +  AL+RL+ A E+AK  LSS  QT I +  +             +TRA+FE L  D
Sbjct:  191 VYDLGGGTFDVSVLEIGDGVFEVKSTNGDTFLGGEDFDMRLVNYLADEFKKEQGIDLRNDKLALQRLKEAAEKAKIELSSATQTEINLPFITADASGPKHLTMKLTRAKFEALVED 306          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK2_SYNPX (Chaperone protein dnaK2 OS=Synechococcus sp. (strain WH8102) GN=dnaK2 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.105e-22
Identity = 57/114 (50.00%), Postives = 77/114 (67.54%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIE---IDSLYEGIDFYS-TITRARFEEL 332
            L+FDLGGGTFDVS+L + +G+FEV +T+GDTHLGG+DFD  +V+H  + FK     D+  + +AL+RL  A E+AK  LSS  Q+ I    I +  EG      T+TRA+FEEL
Sbjct:  189 LVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKVIVDHLAETFKSNEGIDLRQDKQALQRLTEAAEKAKIELSSATQSEINLPFITATPEGPKHLDLTLTRAKFEEL 302          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: GRP75_PONAB (Stress-70 protein, mitochondrial OS=Pongo abelii GN=HSPA9 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.444e-22
Identity = 49/91 (53.85%), Postives = 69/91 (75.82%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSL 278
            ++DLGGGTFD+S+L I++G+FEVK+T GDT LGGEDFD  ++ H V+EFKR+   D++ +  AL+R+R A E+AK  LSS+ QT I +  L
Sbjct:  242 VYDLGGGTFDISILEIQKGVFEVKSTNGDTFLGGEDFDQALLRHIVKEFKRETGVDLTKDNMALQRVREAAEKAKCELSSSVQTDINLPYL 332          
The following BLAST results are available for this feature:
BLAST of CX288666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_CLOBM1.105e-2245.38Chaperone protein dnaK OS=Clostridium botulinum (s... [more]
DNAK_CLOBL1.105e-2245.38Chaperone protein dnaK OS=Clostridium botulinum (s... [more]
DNAK_CLOBK1.105e-2245.38Chaperone protein dnaK OS=Clostridium botulinum (s... [more]
DNAK_CLOBJ1.105e-2245.38Chaperone protein dnaK OS=Clostridium botulinum (s... [more]
DNAK_CLOBH1.105e-2245.38Chaperone protein dnaK OS=Clostridium botulinum (s... [more]
DNAK_CLOB61.105e-2245.38Chaperone protein dnaK OS=Clostridium botulinum (s... [more]
DNAK_CLOB11.105e-2245.38Chaperone protein dnaK OS=Clostridium botulinum (s... [more]
DNAK_AZOC51.105e-2248.28Chaperone protein dnaK OS=Azorhizobium caulinodans... [more]
DNAK2_SYNPX1.105e-2250.00Chaperone protein dnaK2 OS=Synechococcus sp. (stra... [more]
GRP75_PONAB1.444e-2253.85Stress-70 protein, mitochondrial OS=Pongo abelii G... [more]

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Properties
Property NameValue
Genbank descriptionC02003A05SK IF1 Citrus clementina cDNA clone C02003A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288666 ID=CX288666; Name=CX288666; organism=Citrus clementina; type=EST; length=342bp
TGTTGATCTTTGATCTGGGTGGCGGTACTTTTGATGTGTCGTTGCTCACT
ATTGAGGAGGGAATCTTTGAAGTGAAGGCTACTGCTGGAGACACTCATCT
TGGTGGTGAGGATTTTGATAACAGAATGGTGAATCATTTTGTTCAGGAGT
TTAAGAGGAAGAACAAGAAGGATATTAGCGGTAACCCTAGAGCTCTTAGG
AGATTGAGGACTGCTTGTGAGAGAGCGAAGAGGACTCTCTCCTCTACTGC
CCAGACTACAATTGAGATTGATTCTTTGTATGAGGGTATTGACTTCTACT
CAACCATAACTCGTGCCAGATTTGAGGAGTTGAACATGGATC
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