CX288666

Overview
NameCX288666
Unique NameCX288666
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length342
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10212 contig Ccv1_Contig10212:710..1052. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_RHILE (Chaperone protein dnaK OS=Rhizobium leguminosarum GN=dnaK PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.885e-22
Identity = 55/113 (48.67%), Postives = 74/113 (65.49%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYSTITRARFEEL 332
            ++DLGGGTFD+S+L I +G+FEVK+T GDT LGGEDFD R+V + V EFKR N  D+  +  AL+RL+ A E+AK  LSS+ QT I +  +             +TRA+ E L
Sbjct:  191 VYDLGGGTFDISILEIGDGVFEVKSTNGDTFLGGEDFDMRLVEYLVAEFKRDNGIDLKNDKLALQRLKEAAEKAKIELSSSQQTEINLPFITADASGPKHLTLKLTRAKLESL 303          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_METBU (Chaperone protein dnaK OS=Methanococcoides burtonii (strain DSM 6242) GN=dnaK PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.885e-22
Identity = 54/118 (45.76%), Postives = 77/118 (65.25%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI-----DSLYEGIDFYSTITRARFEELNMD 341
            L++DLGGGTFDVS+L + +G+FEV +T+G+THLGG+DFD R+    V+EFK+    D+S +  AL+RL  A E+AK  LS  A T + +     DS  +       ITRA+FE++  D
Sbjct:  168 LVYDLGGGTFDVSILELGDGVFEVLSTSGNTHLGGDDFDQRITEFLVEEFKKAEGIDLSNDKAALQRLNDAAEKAKIELSGVASTNVNLPFITADSNGQPKHIDIDITRAQFEKMTED 285          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_DEIRA (Chaperone protein dnaK OS=Deinococcus radiodurans GN=dnaK PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 1.885e-22
Identity = 53/119 (44.54%), Postives = 82/119 (68.91%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSL------YEGIDFYSTITRARFEELNMD 341
            L+FDLGGGTFDV++L + +G+FEVK+TAGDTHLGG DFD R+V+    EF++++  D+  + +AL+RL  A E+AK  LS+ ++T+I +  +         +    +++RA+FEEL  D
Sbjct:  187 LVFDLGGGTFDVTILELGDGVFEVKSTAGDTHLGGADFDYRIVDWLAGEFQKEHNFDLRKDKQALQRLIEAAEKAKIDLSNASETSISLPFITFDPETRTPMHLERSLSRAKFEELTAD 305          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_CHLCH (Chaperone protein dnaK OS=Chlorobium chlorochromatii (strain CaD3) GN=dnaK PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.885e-22
Identity = 53/116 (45.69%), Postives = 79/116 (68.10%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIE---IDSLYEG-IDFYSTITRARFEELNMD 341
            +FDLGGGTFD+S+L + EG+FEVK+T GDTHLGG+DFD +++++  +EFK++   D+  +   L+RL+ A E+AK  LSS + T I    I +  EG       +TRA+FE ++ D
Sbjct:  189 VFDLGGGTFDISILELGEGVFEVKSTDGDTHLGGDDFDQKIIDYIAEEFKKQEGIDLRKDAITLQRLKEAAEKAKIELSSRSDTEINLPFITATQEGPKHLVINLTRAKFEAISAD 304          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_CARHZ (Chaperone protein dnaK OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=dnaK PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.885e-22
Identity = 52/117 (44.44%), Postives = 78/117 (66.67%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEG----IDFYSTITRARFEELNMD 341
            L++DLGGGTFDVS+L I +G+FEVKATAG+  LGG+DFD R+++  V+ FK+++  D+  +  A++RL+ A E+AK  LS   +T I +  +       +    T+TRA+F EL  D
Sbjct:  166 LVYDLGGGTFDVSILEIGDGVFEVKATAGNNRLGGDDFDQRIIDWLVENFKKEHGIDLRNDKMAMQRLKEAAEKAKIELSGVLETQINLPFIAANQNGPLHIDVTLTRAKFNELTAD 282          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_BART1 (Chaperone protein dnaK OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=dnaK PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.885e-22
Identity = 54/113 (47.79%), Postives = 75/113 (66.37%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYSTITRARFEEL 332
            ++DLGGGTFD+S+L I +G+FEVK+T GDT LGGEDFD R+V +F  EFK++   D+  +  AL+RL+ A E+AK  LSS+ QT I +  +             +TRA+FE L
Sbjct:  191 VYDLGGGTFDISVLEIGDGVFEVKSTNGDTFLGGEDFDMRLVGYFADEFKKEQGIDLKNDKLALQRLKEAAEKAKIELSSSQQTEINLPFITADQSGPKHLTMKLTRAKFESL 303          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_BARQU (Chaperone protein dnaK OS=Bartonella quintana GN=dnaK PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.885e-22
Identity = 54/113 (47.79%), Postives = 75/113 (66.37%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYSTITRARFEEL 332
            ++DLGGGTFD+S+L I +G+FEVK+T GDT LGGEDFD R+V +F  EFK++   D+  +  AL+RL+ A E+AK  LSS+ QT I +  +             +TRA+FE L
Sbjct:  191 VYDLGGGTFDISVLEIGDGVFEVKSTNGDTFLGGEDFDMRLVGYFADEFKKEQGIDLKNDKLALQRLKEAAEKAKIELSSSQQTEINLPFITADQSGPKHLTMKLTRAKFESL 303          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_BARHE (Chaperone protein dnaK OS=Bartonella henselae GN=dnaK PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.885e-22
Identity = 54/113 (47.79%), Postives = 75/113 (66.37%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYSTITRARFEEL 332
            ++DLGGGTFD+S+L I +G+FEVK+T GDT LGGEDFD R+V +F  EFK++   D+  +  AL+RL+ A E+AK  LSS+ QT I +  +             +TRA+FE L
Sbjct:  191 VYDLGGGTFDISVLEIGDGVFEVKSTNGDTFLGGEDFDMRLVGYFADEFKKEQGIDLKNDKLALQRLKEAAEKAKIELSSSQQTEINLPFITADQSGPKHLTMKLTRAKFESL 303          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK2_PROMM (Chaperone protein dnaK2 OS=Prochlorococcus marinus (strain MIT 9313) GN=dnaK2 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.885e-22
Identity = 57/114 (50.00%), Postives = 76/114 (66.67%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIE---IDSLYEGIDFYS-TITRARFEEL 332
            L+FDLGGGTFDVS+L + +G+FEV +T+GDTHLGG+DFD  +V+H    FK     D+  + +AL+RL  A E+AK  LSS  Q+ I    I +  EG      T+TRA+FEEL
Sbjct:  189 LVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKVIVDHLAATFKANEGIDLRQDKQALQRLTEAAEKAKIELSSATQSEINLPFITATSEGPKHLDLTLTRAKFEEL 302          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_RHOS7 (Chaperone protein dnaK OS=Rhodopseudomonas sp. (strain No.7) GN=dnaK PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.462e-22
Identity = 55/113 (48.67%), Postives = 75/113 (66.37%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYSTITRARFEEL 332
            ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFD R+VN+   EF+++   D+  +  AL+RL+ A E+AK  LSST QT I +  +             +TRA+FE L
Sbjct:  191 VYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDMRLVNYLADEFQKEQGIDLRKDKLALQRLKEAAEKAKIELSSTTQTEINLPFITADQSGPKHLTMKLTRAKFEAL 303          
The following BLAST results are available for this feature:
BLAST of CX288666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_RHILE1.885e-2248.67Chaperone protein dnaK OS=Rhizobium leguminosarum ... [more]
DNAK_METBU1.885e-2245.76Chaperone protein dnaK OS=Methanococcoides burtoni... [more]
DNAK_DEIRA1.885e-2244.54Chaperone protein dnaK OS=Deinococcus radiodurans ... [more]
DNAK_CHLCH1.885e-2245.69Chaperone protein dnaK OS=Chlorobium chlorochromat... [more]
DNAK_CARHZ1.885e-2244.44Chaperone protein dnaK OS=Carboxydothermus hydroge... [more]
DNAK_BART11.885e-2247.79Chaperone protein dnaK OS=Bartonella tribocorum (s... [more]
DNAK_BARQU1.885e-2247.79Chaperone protein dnaK OS=Bartonella quintana GN=d... [more]
DNAK_BARHE1.885e-2247.79Chaperone protein dnaK OS=Bartonella henselae GN=d... [more]
DNAK2_PROMM1.885e-2250.00Chaperone protein dnaK2 OS=Prochlorococcus marinus... [more]
DNAK_RHOS72.462e-2248.67Chaperone protein dnaK OS=Rhodopseudomonas sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionC02003A05SK IF1 Citrus clementina cDNA clone C02003A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288666 ID=CX288666; Name=CX288666; organism=Citrus clementina; type=EST; length=342bp
TGTTGATCTTTGATCTGGGTGGCGGTACTTTTGATGTGTCGTTGCTCACT
ATTGAGGAGGGAATCTTTGAAGTGAAGGCTACTGCTGGAGACACTCATCT
TGGTGGTGAGGATTTTGATAACAGAATGGTGAATCATTTTGTTCAGGAGT
TTAAGAGGAAGAACAAGAAGGATATTAGCGGTAACCCTAGAGCTCTTAGG
AGATTGAGGACTGCTTGTGAGAGAGCGAAGAGGACTCTCTCCTCTACTGC
CCAGACTACAATTGAGATTGATTCTTTGTATGAGGGTATTGACTTCTACT
CAACCATAACTCGTGCCAGATTTGAGGAGTTGAACATGGATC
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