CX288666

Overview
NameCX288666
Unique NameCX288666
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length342
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_RHOPT (Chaperone protein dnaK OS=Rhodopseudomonas palustris (strain TIE-1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.462e-22
Identity = 55/113 (48.67%), Postives = 75/113 (66.37%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYSTITRARFEEL 332
            ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFD R+VN+   EF+++   D+  +  AL+RL+ A E+AK  LSST QT I +  +             +TRA+FE L
Sbjct:  191 VYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDMRLVNYLADEFQKEQGIDLRKDKLALQRLKEAAEKAKIELSSTTQTEINLPFITADQSGPKHLTMKLTRAKFEAL 303          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_RHOPA (Chaperone protein dnaK OS=Rhodopseudomonas palustris GN=dnaK PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.462e-22
Identity = 55/113 (48.67%), Postives = 75/113 (66.37%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYSTITRARFEEL 332
            ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFD R+VN+   EF+++   D+  +  AL+RL+ A E+AK  LSST QT I +  +             +TRA+FE L
Sbjct:  191 VYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDMRLVNYLADEFQKEQGIDLRKDKLALQRLKEAAEKAKIELSSTTQTEINLPFITADQSGPKHLTMKLTRAKFEAL 303          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_RHILW (Chaperone protein dnaK OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=dnaK PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.462e-22
Identity = 55/113 (48.67%), Postives = 74/113 (65.49%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYSTITRARFEEL 332
            ++DLGGGTFD+S+L I +G+FEVK+T GDT LGGEDFD R+V + V EFKR N  D+  +  AL+RL+ A E+AK  LSS+ QT I +  +             +TRA+ E L
Sbjct:  191 VYDLGGGTFDISILEIGDGVFEVKSTNGDTFLGGEDFDMRLVEYLVGEFKRDNGIDLKNDKLALQRLKEAAEKAKIELSSSQQTEINLPFITADASGPKHLTLKLTRAKLESL 303          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_RHILO (Chaperone protein dnaK OS=Rhizobium loti GN=dnaK PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.462e-22
Identity = 55/116 (47.41%), Postives = 75/116 (64.66%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGI----DFYSTITRARFEELNMD 341
            ++DLGGGTFD+S+L I +G+FEVK+T GDT LGGEDFD R+V +   EFK++   D+  +  AL+RL+ A E+AK  LSST QT I +  +             +TRA+FE L  D
Sbjct:  191 VYDLGGGTFDISVLEIGDGVFEVKSTNGDTFLGGEDFDMRLVEYLAAEFKKEQGIDLKNDKLALQRLKEAAEKAKIELSSTTQTEINLPFITADATGPKHLTLKLTRAKFESLVED 306          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_RHIL3 (Chaperone protein dnaK OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=dnaK PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.462e-22
Identity = 55/113 (48.67%), Postives = 74/113 (65.49%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYSTITRARFEEL 332
            ++DLGGGTFD+S+L I +G+FEVK+T GDT LGGEDFD R+V + V EFKR N  D+  +  AL+RL+ A E+AK  LSS+ QT I +  +             +TRA+ E L
Sbjct:  191 VYDLGGGTFDISILEIGDGVFEVKSTNGDTFLGGEDFDMRLVEYLVGEFKRDNGIDLKNDKLALQRLKEAAEKAKIELSSSQQTEINLPFITADASGPKHLTLKLTRAKLESL 303          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_PARDP (Chaperone protein dnaK OS=Paracoccus denitrificans (strain Pd 1222) GN=dnaK PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.462e-22
Identity = 54/117 (46.15%), Postives = 81/117 (69.23%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID--------FYSTITRARFEEL 332
            ++DLGGGTFD+++L I++G+FEVK+T GDT LGGEDFD R+VN+   EFK+++  D++ +  AL+RL+ A E+AK  LSS++QT  EI+  +  +D            +TRA+ E L
Sbjct:  190 VYDLGGGTFDITILEIDDGLFEVKSTNGDTFLGGEDFDMRIVNYLADEFKKEHGVDLTKDKMALQRLKEAAEKAKIELSSSSQT--EINQPFISMDKDSGTPLHMVMKLTRAKLESL 304          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_NOCFA (Chaperone protein dnaK OS=Nocardia farcinica GN=dnaK PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.462e-22
Identity = 54/118 (45.76%), Postives = 79/118 (66.95%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIE-----IDSLYEGIDFYSTITRARFEELNMD 341
            L+FDLGGGTFDVSLL I EG+ EV+AT+GD HLGG+D+D R+VN  V +FK  +  D++ +  A++RLR A E+AK  LSS+  T+I      +D+    +     ++RA F+++  D
Sbjct:  167 LVFDLGGGTFDVSLLEIGEGVVEVRATSGDNHLGGDDWDQRIVNWLVDKFKASSGIDLTKDKMAMQRLREAAEKAKIELSSSQSTSINLPYITVDADKNPLFLDEQLSRAEFQKITSD 284          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_METBF (Chaperone protein dnaK OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=dnaK PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.462e-22
Identity = 54/118 (45.76%), Postives = 77/118 (65.25%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID-----FYSTITRARFEELNMD 341
            L++DLGGGTFDVS+L +  G+FEVK+T+GDT LGG+DFD R+VN+ + EF++    D+S +   L+RL  A E+AK  LS  A T I +  L  G D         +TRA+F+++  D
Sbjct:  168 LVYDLGGGTFDVSILELGGGVFEVKSTSGDTRLGGDDFDQRIVNYLLAEFRKIEGIDLSKDKAVLQRLTDAAEKAKIELSGVASTNINLPFLTVGADGEPKHLDIDLTRAQFQKMTED 285          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_AMOA5 (Chaperone protein dnaK OS=Amoebophilus asiaticus (strain 5a2) GN=dnaK PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.462e-22
Identity = 49/113 (43.36%), Postives = 79/113 (69.91%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEID--SLYEGI--DFYSTITRARFEEL 332
            +FDLGGGTFD+S+L + +G+FEVK+T GD HLGG++FD ++++   +EFK++   D+  +P AL+RL+ A E+AK  LS ++ T + +   +  +G+       ITRA+FE+L
Sbjct:  192 VFDLGGGTFDISILELGDGVFEVKSTNGDVHLGGDNFDQKLIDWLAEEFKKEESVDLRKDPTALQRLKEAAEKAKIELSGSSTTEVNLPYITAIDGVPKHLVKKITRAQFEQL 304          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_VIBPA (Chaperone protein dnaK OS=Vibrio parahaemolyticus GN=dnaK PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.216e-22
Identity = 54/120 (45.00%), Postives = 78/120 (65.00%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEE----GIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGI----DFYSTITRARFEELNMD 341
            ++DLGGGTFD+S++ I+E      FEV AT GDTHLGGEDFDNR++N+ V EFK++   D+  +P A++R++ A E+AK  LSST+QT + +  +             +TRA+ E L  D
Sbjct:  191 VYDLGGGTFDISIIEIDEVEGEKTFEVLATNGDTHLGGEDFDNRLINYLVDEFKKEQGIDLKNDPLAMQRVKEAAEKAKIELSSTSQTDVNLPYVTADATGPKHMNIKVTRAKLESLVED 310          
The following BLAST results are available for this feature:
BLAST of CX288666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_RHOPT2.462e-2248.67Chaperone protein dnaK OS=Rhodopseudomonas palustr... [more]
DNAK_RHOPA2.462e-2248.67Chaperone protein dnaK OS=Rhodopseudomonas palustr... [more]
DNAK_RHILW2.462e-2248.67Chaperone protein dnaK OS=Rhizobium leguminosarum ... [more]
DNAK_RHILO2.462e-2247.41Chaperone protein dnaK OS=Rhizobium loti GN=dnaK P... [more]
DNAK_RHIL32.462e-2248.67Chaperone protein dnaK OS=Rhizobium leguminosarum ... [more]
DNAK_PARDP2.462e-2246.15Chaperone protein dnaK OS=Paracoccus denitrificans... [more]
DNAK_NOCFA2.462e-2245.76Chaperone protein dnaK OS=Nocardia farcinica GN=dn... [more]
DNAK_METBF2.462e-2245.76Chaperone protein dnaK OS=Methanosarcina barkeri (... [more]
DNAK_AMOA52.462e-2243.36Chaperone protein dnaK OS=Amoebophilus asiaticus (... [more]
DNAK_VIBPA3.216e-2245.00Chaperone protein dnaK OS=Vibrio parahaemolyticus ... [more]

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Properties
Property NameValue
Genbank descriptionC02003A05SK IF1 Citrus clementina cDNA clone C02003A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288666 ID=CX288666; Name=CX288666; organism=Citrus clementina; type=EST; length=342bp
TGTTGATCTTTGATCTGGGTGGCGGTACTTTTGATGTGTCGTTGCTCACT
ATTGAGGAGGGAATCTTTGAAGTGAAGGCTACTGCTGGAGACACTCATCT
TGGTGGTGAGGATTTTGATAACAGAATGGTGAATCATTTTGTTCAGGAGT
TTAAGAGGAAGAACAAGAAGGATATTAGCGGTAACCCTAGAGCTCTTAGG
AGATTGAGGACTGCTTGTGAGAGAGCGAAGAGGACTCTCTCCTCTACTGC
CCAGACTACAATTGAGATTGATTCTTTGTATGAGGGTATTGACTTCTACT
CAACCATAACTCGTGCCAGATTTGAGGAGTTGAACATGGATC
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