CX288666

Overview
NameCX288666
Unique NameCX288666
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length342
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_RHOCA (Chaperone protein dnaK OS=Rhodobacter capsulatus GN=dnaK PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.216e-22
Identity = 54/115 (46.96%), Postives = 79/115 (68.70%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEID----SLYEGIDFYST--ITRARFEEL 332
            ++DLGGGTFD+S+L I++G+FEVK+T GDT LGGEDFD R+VN+   EFK+++  D++ +  AL+RL+ A E+AK  LSS +QT I       +   G+  +    +TRA+ E L
Sbjct:  190 VYDLGGGTFDISVLEIDDGLFEVKSTNGDTFLGGEDFDMRIVNYLADEFKKEHGVDLTKDKMALQRLKEAAEKAKIELSSASQTEINQPFISMNAATGVPLHMVMKLTRAKLESL 304          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_MYCLE (Chaperone protein dnaK OS=Mycobacterium leprae GN=dnaK PE=1 SV=5)

HSP 1 Score: 103.605 bits (257), Expect = 3.216e-22
Identity = 55/118 (46.61%), Postives = 78/118 (66.10%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTT-----IEIDSLYEGIDFYSTITRARFEELNMD 341
            L+FDLGGGTFDVSLL I EG+ EV+AT+GD HLGG+D+D+R+VN  V +FK  +  D++ +  A++RLR A E+AK  LSS+  T+     I +DS    +     + RA F+ +  D
Sbjct:  167 LVFDLGGGTFDVSLLEIGEGVVEVRATSGDNHLGGDDWDDRIVNWLVDKFKGTSGIDLTKDKMAMQRLREAAEKAKIELSSSQSTSVNLPYITVDSDKNPLFLDEQLIRAEFQRITQD 284          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_MYCLB (Chaperone protein dnaK OS=Mycobacterium leprae (strain Br4923) GN=dnaK PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.216e-22
Identity = 55/118 (46.61%), Postives = 78/118 (66.10%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTT-----IEIDSLYEGIDFYSTITRARFEELNMD 341
            L+FDLGGGTFDVSLL I EG+ EV+AT+GD HLGG+D+D+R+VN  V +FK  +  D++ +  A++RLR A E+AK  LSS+  T+     I +DS    +     + RA F+ +  D
Sbjct:  167 LVFDLGGGTFDVSLLEIGEGVVEVRATSGDNHLGGDDWDDRIVNWLVDKFKGTSGIDLTKDKMAMQRLREAAEKAKIELSSSQSTSVNLPYITVDSDKNPLFLDEQLIRAEFQRITQD 284          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_MYCAP (Chaperone protein dnaK OS=Mycoplasma agalactiae (strain PG2) GN=dnaK PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.216e-22
Identity = 54/115 (46.96%), Postives = 75/115 (65.22%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLY-----EGIDFYSTITRARFEEL 332
            L+FDLGGGTFDVS+L + EG FEV +TAGD  LGG+D+DN +V   +   K+  K D++ N  A+ RL+ A E+AK  LSS+ Q TI +  L      E I   +T+ R++FEE+
Sbjct:  167 LVFDLGGGTFDVSILELAEGTFEVLSTAGDNRLGGDDWDNEIVKWLIDLIKKDYKTDVTNNKMAMARLKAAAEKAKIDLSSSQQATIMLPFLVMQQGSEPISVEATLRRSQFEEM 281          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_METSB (Chaperone protein dnaK OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=dnaK PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.216e-22
Identity = 55/113 (48.67%), Postives = 74/113 (65.49%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGI----DFYSTITRARFEEL 332
            ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFD R+V +   EFK++N  D+  +  AL+RL+ A E+AK  LSS  QT I +  +             +TRA+FE L
Sbjct:  191 VYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDVRLVEYLADEFKKENGIDLKKDKLALQRLKEAAEKAKIELSSATQTEINLPYITADATGPKHLTLKLTRAKFEAL 303          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_METPB (Chaperone protein dnaK OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=dnaK PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.216e-22
Identity = 54/113 (47.79%), Postives = 75/113 (66.37%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYSTITRARFEEL 332
            ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFDNR+V +   EFK++   D++ +  AL+RL+ A E+AK  LSS  QT I +  +             ++RA+FE L
Sbjct:  191 VYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDNRVVEYLTAEFKKEQGIDLTKDKLALQRLKEAAEKAKIELSSATQTEINLPYITADASGPKHLALKLSRAKFESL 303          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_METEP (Chaperone protein dnaK OS=Methylobacterium extorquens (strain PA1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.216e-22
Identity = 54/113 (47.79%), Postives = 75/113 (66.37%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYSTITRARFEEL 332
            ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFDNR+V +   EFK++   D++ +  AL+RL+ A E+AK  LSS  QT I +  +             ++RA+FE L
Sbjct:  191 VYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDNRVVEYLTAEFKKEQGIDLTKDKLALQRLKEAAEKAKIELSSATQTEINLPYITADASGPKHLALKLSRAKFESL 303          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_METC4 (Chaperone protein dnaK OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=dnaK PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.216e-22
Identity = 54/113 (47.79%), Postives = 75/113 (66.37%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYSTITRARFEEL 332
            ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFDNR+V +   EFK++   D++ +  AL+RL+ A E+AK  LSS  QT I +  +             ++RA+FE L
Sbjct:  191 VYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDNRVVEYLTAEFKKEQGIDLTKDKLALQRLKEAAEKAKIELSSATQTEINLPYITADASGPKHLALKLSRAKFESL 303          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_LACF3 (Chaperone protein dnaK OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251) GN=dnaK PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.216e-22
Identity = 49/117 (41.88%), Postives = 79/117 (67.52%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEG----IDFYSTITRARFEELNMD 341
            L++DLGGGTFDVS+L + +G+F+V +T GDTHLGG+DFD ++++  +  FK++N  D+S +  AL+RL+ A E+AK+ +S   +  I +  +  G    +    T+TRA+F +L  D
Sbjct:  168 LVYDLGGGTFDVSILELGDGVFQVLSTNGDTHLGGDDFDQKIMDWLIDGFKQENGIDLSQDKMALQRLKDAAEKAKKDVSGVQEAQISLPFITSGDNGPLHLEKTLTRAQFNQLTND 284          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_DESVM (Chaperone protein dnaK OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=dnaK PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.216e-22
Identity = 46/88 (52.27%), Postives = 69/88 (78.41%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 269
            +FDLGGGTFD+S+L + + + EV+AT GDT LGGEDFD R++N+ V+EF+R+N  D+S +  AL+RL+ A E+AK+ LS++ +T I +
Sbjct:  190 VFDLGGGTFDISILEVGDNVVEVRATNGDTFLGGEDFDQRVINYLVEEFRRENGVDLSKDRMALQRLKEAAEKAKKDLSTSMETEINL 277          
The following BLAST results are available for this feature:
BLAST of CX288666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_RHOCA3.216e-2246.96Chaperone protein dnaK OS=Rhodobacter capsulatus G... [more]
DNAK_MYCLE3.216e-2246.61Chaperone protein dnaK OS=Mycobacterium leprae GN=... [more]
DNAK_MYCLB3.216e-2246.61Chaperone protein dnaK OS=Mycobacterium leprae (st... [more]
DNAK_MYCAP3.216e-2246.96Chaperone protein dnaK OS=Mycoplasma agalactiae (s... [more]
DNAK_METSB3.216e-2248.67Chaperone protein dnaK OS=Methylocella silvestris ... [more]
DNAK_METPB3.216e-2247.79Chaperone protein dnaK OS=Methylobacterium populi ... [more]
DNAK_METEP3.216e-2247.79Chaperone protein dnaK OS=Methylobacterium extorqu... [more]
DNAK_METC43.216e-2247.79Chaperone protein dnaK OS=Methylobacterium chlorom... [more]
DNAK_LACF33.216e-2241.88Chaperone protein dnaK OS=Lactobacillus fermentum ... [more]
DNAK_DESVM3.216e-2252.27Chaperone protein dnaK OS=Desulfovibrio vulgaris (... [more]

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Properties
Property NameValue
Genbank descriptionC02003A05SK IF1 Citrus clementina cDNA clone C02003A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288666 ID=CX288666; Name=CX288666; organism=Citrus clementina; type=EST; length=342bp
TGTTGATCTTTGATCTGGGTGGCGGTACTTTTGATGTGTCGTTGCTCACT
ATTGAGGAGGGAATCTTTGAAGTGAAGGCTACTGCTGGAGACACTCATCT
TGGTGGTGAGGATTTTGATAACAGAATGGTGAATCATTTTGTTCAGGAGT
TTAAGAGGAAGAACAAGAAGGATATTAGCGGTAACCCTAGAGCTCTTAGG
AGATTGAGGACTGCTTGTGAGAGAGCGAAGAGGACTCTCTCCTCTACTGC
CCAGACTACAATTGAGATTGATTCTTTGTATGAGGGTATTGACTTCTACT
CAACCATAACTCGTGCCAGATTTGAGGAGTTGAACATGGATC
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