CX288666

Overview
NameCX288666
Unique NameCX288666
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length342
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_DEIPR (Chaperone protein dnaK (Fragment) OS=Deinococcus proteolyticus GN=dnaK PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.216e-22
Identity = 52/119 (43.70%), Postives = 81/119 (68.07%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSL------YEGIDFYSTITRARFEELNMD 341
            L+FDLGGGTFDV++L + +G+FEVK+T+GDT LGG DFD R+V+   +EF +++  D+  + +AL+RL  A E+AK  LS+ ++T+I +  +         +    T++RA+FEEL  D
Sbjct:  176 LVFDLGGGTFDVTILELGDGVFEVKSTSGDTSLGGADFDQRIVDWLAEEFNKEHNFDLRKDKQALQRLIEAAEKAKIELSNASETSISLPFITFDPETRTPLHLERTLSRAKFEELTAD 294          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_CLOPS (Chaperone protein dnaK OS=Clostridium perfringens (strain SM101 / Type A) GN=dnaK PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.216e-22
Identity = 54/119 (45.38%), Postives = 80/119 (67.23%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLY------EGIDFYSTITRARFEELNMD 341
            L++DLGGGTFDVS+L + +G+FEV +T GD  LGG+DFD R++++  ++FK +N  D+  +  AL+RL+ A E+AK  LSS+ QT I +  +       + ID   T+TRA+F EL  D
Sbjct:  167 LVYDLGGGTFDVSILDLGDGVFEVVSTNGDARLGGDDFDQRIIDYIAEDFKAQNGIDLRQDKMALQRLKEAAEKAKIELSSSTQTLINLPFITADATGPKHIDM--TLTRAKFNELTHD 283          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_CLOPE (Chaperone protein dnaK OS=Clostridium perfringens GN=dnaK PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 3.216e-22
Identity = 54/119 (45.38%), Postives = 80/119 (67.23%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLY------EGIDFYSTITRARFEELNMD 341
            L++DLGGGTFDVS+L + +G+FEV +T GD  LGG+DFD R++++  ++FK +N  D+  +  AL+RL+ A E+AK  LSS+ QT I +  +       + ID   T+TRA+F EL  D
Sbjct:  167 LVYDLGGGTFDVSILDLGDGVFEVVSTNGDARLGGDDFDQRIIDYIAEDFKAQNGIDLRQDKMALQRLKEAAEKAKIELSSSTQTLINLPFITADATGPKHIDM--TLTRAKFNELTHD 283          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_CLOP1 (Chaperone protein dnaK OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=dnaK PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.216e-22
Identity = 54/119 (45.38%), Postives = 80/119 (67.23%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLY------EGIDFYSTITRARFEELNMD 341
            L++DLGGGTFDVS+L + +G+FEV +T GD  LGG+DFD R++++  ++FK +N  D+  +  AL+RL+ A E+AK  LSS+ QT I +  +       + ID   T+TRA+F EL  D
Sbjct:  167 LVYDLGGGTFDVSILDLGDGVFEVVSTNGDARLGGDDFDQRIIDYIAEDFKAQNGIDLRQDKMALQRLKEAAEKAKIELSSSTQTLINLPFITADATGPKHIDM--TLTRAKFNELTHD 283          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_CHLPD (Chaperone protein dnaK OS=Chlorobium phaeobacteroides (strain DSM 266) GN=dnaK PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.216e-22
Identity = 54/116 (46.55%), Postives = 76/116 (65.52%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIE---IDSLYEG-IDFYSTITRARFEELNMD 341
            +FDLGGGTFD+S+L + +G+FEVK+T GDTHLGG+DFD +++N    EFK++   D+  +  AL+RL+ A E+AK  LSS   T I    I +  EG       +TRA+FE +  D
Sbjct:  189 VFDLGGGTFDISILELGDGVFEVKSTDGDTHLGGDDFDQKIINFLADEFKKQEGIDLRNDAIALQRLKEAAEKAKVELSSRTDTEINLPFITATQEGPKHLVINLTRAKFEAMCSD 304          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_VIBSL (Chaperone protein dnaK OS=Vibrio splendidus (strain LGP32) GN=dnaK PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.200e-22
Identity = 54/120 (45.00%), Postives = 77/120 (64.17%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEE----GIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGI----DFYSTITRARFEELNMD 341
            ++DLGGGTFD+S++ I+E      FEV +T GDTHLGGEDFDNRM+N+ V EFK++   D+  +P A++R++ A E+AK  LSST QT + +  +             +TRA+ E L  D
Sbjct:  191 VYDLGGGTFDISIIEIDEVEGEKTFEVLSTNGDTHLGGEDFDNRMINYLVDEFKKEQGIDLKADPLAMQRVKEAAEKAKIELSSTTQTDVNLPYVTADATGPKHMNIKVTRAKLESLVED 310          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_THEFY (Chaperone protein dnaK OS=Thermobifida fusca (strain YX) GN=dnaK PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.200e-22
Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIE---IDSLYEG-IDFYSTITRARFEEL 332
            L+FDLGGGTFDVSLL + +G+ EVKAT GD HLGG+D+D  +V+  V+ FK  N  D+S +  A++RLR A E+AK  LSS+ +T+I    I +  EG +     +TRA F+ L
Sbjct:  166 LVFDLGGGTFDVSLLDVGDGVVEVKATHGDNHLGGDDWDQAVVDWLVERFKSSNGIDLSKDKMAMQRLREAAEKAKIELSSSTETSINLPYITASAEGPLHLDEKLTRAEFQRL 279          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_SHESH (Chaperone protein dnaK OS=Shewanella sediminis (strain HAW-EB3) GN=dnaK PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.200e-22
Identity = 54/120 (45.00%), Postives = 76/120 (63.33%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGI----DFYSTITRARFEELNMD 341
            ++DLGGGTFD+S++ I+    E  FEV AT GDTHLGGEDFDNR++N+   EFK++   D+  +P A++RL+ A E+AK  LSS +QT + +  +             ITRA+ E L  D
Sbjct:  191 VYDLGGGTFDISIIEIDSVDGEQTFEVLATNGDTHLGGEDFDNRLINYLADEFKKEQSLDLRNDPLAMQRLKEAAEKAKIELSSASQTEVNLPYITADATGPKHLVVKITRAKLESLVED 310          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_ROSDO (Chaperone protein dnaK OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=dnaK PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.200e-22
Identity = 52/114 (45.61%), Postives = 79/114 (69.30%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTT-----IEIDSLYEGIDFYSTITRARFEEL 332
            ++DLGGGTFDV++L I++G+FEVK+T GDT LGGEDFD R+VN+    FK+++  D++ +  AL+RL+ A E+AK  LSS++QT      I + S  + +     +TR++ E L
Sbjct:  190 VYDLGGGTFDVTILEIDDGLFEVKSTNGDTFLGGEDFDMRIVNYLADTFKKEHSVDLTQDKMALQRLKEAAEKAKIELSSSSQTEINQPFISMGSNGQPLHMVMKLTRSKLESL 303          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_RICBR (Chaperone protein dnaK OS=Rickettsia bellii (strain RML369-C) GN=dnaK PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.200e-22
Identity = 47/88 (53.41%), Postives = 66/88 (75.00%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 269
            ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFD R++ H +  FK+++  D+  +P AL+RL+ A E+AK+ LSS   T I +
Sbjct:  190 VYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDTRILEHLINTFKKESGIDLRNDPLALQRLKEAAEKAKKELSSALTTDINL 277          
The following BLAST results are available for this feature:
BLAST of CX288666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_DEIPR3.216e-2243.70Chaperone protein dnaK (Fragment) OS=Deinococcus p... [more]
DNAK_CLOPS3.216e-2245.38Chaperone protein dnaK OS=Clostridium perfringens ... [more]
DNAK_CLOPE3.216e-2245.38Chaperone protein dnaK OS=Clostridium perfringens ... [more]
DNAK_CLOP13.216e-2245.38Chaperone protein dnaK OS=Clostridium perfringens ... [more]
DNAK_CHLPD3.216e-2246.55Chaperone protein dnaK OS=Chlorobium phaeobacteroi... [more]
DNAK_VIBSL4.200e-2245.00Chaperone protein dnaK OS=Vibrio splendidus (strai... [more]
DNAK_THEFY4.200e-2249.12Chaperone protein dnaK OS=Thermobifida fusca (stra... [more]
DNAK_SHESH4.200e-2245.00Chaperone protein dnaK OS=Shewanella sediminis (st... [more]
DNAK_ROSDO4.200e-2245.61Chaperone protein dnaK OS=Roseobacter denitrifican... [more]
DNAK_RICBR4.200e-2253.41Chaperone protein dnaK OS=Rickettsia bellii (strai... [more]

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Properties
Property NameValue
Genbank descriptionC02003A05SK IF1 Citrus clementina cDNA clone C02003A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288666 ID=CX288666; Name=CX288666; organism=Citrus clementina; type=EST; length=342bp
TGTTGATCTTTGATCTGGGTGGCGGTACTTTTGATGTGTCGTTGCTCACT
ATTGAGGAGGGAATCTTTGAAGTGAAGGCTACTGCTGGAGACACTCATCT
TGGTGGTGAGGATTTTGATAACAGAATGGTGAATCATTTTGTTCAGGAGT
TTAAGAGGAAGAACAAGAAGGATATTAGCGGTAACCCTAGAGCTCTTAGG
AGATTGAGGACTGCTTGTGAGAGAGCGAAGAGGACTCTCTCCTCTACTGC
CCAGACTACAATTGAGATTGATTCTTTGTATGAGGGTATTGACTTCTACT
CAACCATAACTCGTGCCAGATTTGAGGAGTTGAACATGGATC
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