CX288666

Overview
NameCX288666
Unique NameCX288666
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length342
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_RHOS5 (Chaperone protein dnaK OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=dnaK PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.200e-22
Identity = 55/120 (45.83%), Postives = 81/120 (67.50%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID--------FYSTITRARFEELNMD 341
            ++DLGGGTFD+++L I++G+FEVK+T GDT LGGEDFD R+VN+   EFK+++  D++ +  AL+RL+ A E+AK  LSS+ QT  EI+  +  +D            +TRA+ E L  D
Sbjct:  190 VYDLGGGTFDITILEIDDGLFEVKSTNGDTFLGGEDFDMRIVNYLADEFKKEHGVDLTLDKMALQRLKEAAEKAKIELSSSQQT--EINQPFISMDRNTGQPLHMVMKLTRAKLESLVAD 307          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_RHIEC (Chaperone protein dnaK OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=dnaK PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.200e-22
Identity = 54/113 (47.79%), Postives = 74/113 (65.49%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYSTITRARFEEL 332
            ++DLGGGTFD+S+L I +G+FEVK+T GDT LGGEDFD R+V + V EFK+ N  D+  +  AL+RL+ A E+AK  LSS+ QT I +  +             +TRA+ E L
Sbjct:  191 VYDLGGGTFDISILEIGDGVFEVKSTNGDTFLGGEDFDMRLVEYLVAEFKKDNGIDLKNDKLALQRLKEAAEKAKIELSSSQQTEINLPFITADASGPKHLTLKLTRAKLESL 303          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_RHIE6 (Chaperone protein dnaK OS=Rhizobium etli (strain CIAT 652) GN=dnaK PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.200e-22
Identity = 54/113 (47.79%), Postives = 74/113 (65.49%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYSTITRARFEEL 332
            ++DLGGGTFD+S+L I +G+FEVK+T GDT LGGEDFD R+V + V EFK+ N  D+  +  AL+RL+ A E+AK  LSS+ QT I +  +             +TRA+ E L
Sbjct:  191 VYDLGGGTFDISILEIGDGVFEVKSTNGDTFLGGEDFDMRLVEYLVAEFKKDNGIDLKNDKLALQRLKEAAEKAKIELSSSQQTEINLPFITADASGPKHLTLKLTRAKLESL 303          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_PROVI (Chaperone protein dnaK OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=dnaK PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.200e-22
Identity = 54/116 (46.55%), Postives = 77/116 (66.38%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIE---IDSLYEG-IDFYSTITRARFEELNMD 341
            +FDLGGGTFD+S+L + +G+FEVK+T GDTHLGG+DFD ++++    EFK++   D+  +P AL+RL+ A E+AK  LSS   T I    I +  EG       +TRA+FE +  D
Sbjct:  189 VFDLGGGTFDISILELGDGVFEVKSTDGDTHLGGDDFDQKIIDFLADEFKKQEGIDLRNDPIALQRLKEAGEKAKIELSSRTDTEINLPFITATQEGPKHLVINLTRAKFEGICAD 304          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_MYCSS (Chaperone protein dnaK OS=Mycobacterium sp. (strain MCS) GN=dnaK PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.200e-22
Identity = 54/118 (45.76%), Postives = 77/118 (65.25%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIE-----IDSLYEGIDFYSTITRARFEELNMD 341
            L+FDLGGGTFDVSLL I EG+ EV+AT+GD HLGG+D+D R+V   V +FK  +  D++ +  A++RLR A E+AK  LSS+  T+I      +D+    +     +TRA F+ +  D
Sbjct:  167 LVFDLGGGTFDVSLLEIGEGVVEVRATSGDNHLGGDDWDERVVTWLVDKFKASSGIDLTKDKMAMQRLREAAEKAKIELSSSQSTSINLPYITVDADKNPLFLDEQLTRAEFQRITQD 284          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_MYCSK (Chaperone protein dnaK OS=Mycobacterium sp. (strain KMS) GN=dnaK PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.200e-22
Identity = 54/118 (45.76%), Postives = 77/118 (65.25%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIE-----IDSLYEGIDFYSTITRARFEELNMD 341
            L+FDLGGGTFDVSLL I EG+ EV+AT+GD HLGG+D+D R+V   V +FK  +  D++ +  A++RLR A E+AK  LSS+  T+I      +D+    +     +TRA F+ +  D
Sbjct:  167 LVFDLGGGTFDVSLLEIGEGVVEVRATSGDNHLGGDDWDERVVTWLVDKFKASSGIDLTKDKMAMQRLREAAEKAKIELSSSQSTSINLPYITVDADKNPLFLDEQLTRAEFQRITQD 284          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_MYCSJ (Chaperone protein dnaK OS=Mycobacterium sp. (strain JLS) GN=dnaK PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.200e-22
Identity = 54/118 (45.76%), Postives = 77/118 (65.25%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIE-----IDSLYEGIDFYSTITRARFEELNMD 341
            L+FDLGGGTFDVSLL I EG+ EV+AT+GD HLGG+D+D R+V   V +FK  +  D++ +  A++RLR A E+AK  LSS+  T+I      +D+    +     +TRA F+ +  D
Sbjct:  167 LVFDLGGGTFDVSLLEIGEGVVEVRATSGDNHLGGDDWDERVVTWLVDKFKASSGIDLTKDKMAMQRLREAAEKAKIELSSSQSTSINLPYITVDADKNPLFLDEQLTRAEFQRITQD 284          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_LACBA (Chaperone protein dnaK OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=dnaK PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.200e-22
Identity = 50/117 (42.74%), Postives = 78/117 (66.67%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEG----IDFYSTITRARFEELNMD 341
            L++DLGGGTFDVS+L + +G+F+V +T GDTHLGG+DFD ++++  V  FK +N  D+S +  AL+RL+ A E+AK+ LS   +  I +  +  G    +    +++RA+F EL  D
Sbjct:  168 LVYDLGGGTFDVSVLELGDGVFDVLSTNGDTHLGGDDFDQKIMDWLVAGFKEENGVDLSKDKMALQRLKDAAEKAKKDLSGVTEAQISLPFISAGENGPLHLEKSLSRAKFNELTAD 284          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_GUITH (Chaperone protein dnaK OS=Guillardia theta GN=dnaK PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 4.200e-22
Identity = 54/117 (46.15%), Postives = 81/117 (69.23%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYE----GIDFYSTITRARFEELNMD 341
            L+FDLGGGTFDVS+L + +G+FEV +T+GDTHLGG+DFD+++V   ++EF+ ++  ++  + +AL+RL  A E+AK  LS+ +QT I +  L            +ITRA+FEEL  D
Sbjct:  190 LVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDDKIVQWLLKEFETEHSINLKSDRQALQRLTEASEKAKIELSNLSQTEINLPFLTATETGPKHLERSITRAKFEELCSD 306          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_DESRM (Chaperone protein dnaK OS=Desulfotomaculum reducens (strain MI-1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.200e-22
Identity = 51/116 (43.97%), Postives = 77/116 (66.38%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYSTITRARFEELNMD 341
            +FDLGGGTFDVS+L + +G+FEVK+T+G+  LGG+DFD R+V+  V EFK++   D+S +  A++RL+ + E+AK  LS    T + +  +  G D        I+RA+F+EL  D
Sbjct:  167 VFDLGGGTFDVSILELGDGVFEVKSTSGNNRLGGDDFDQRIVDFLVAEFKKETGVDLSKDKMAMQRLKESAEKAKIELSGVLSTNVNLPFISVGADGPLHLDVNISRAKFDELTAD 282          
The following BLAST results are available for this feature:
BLAST of CX288666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_RHOS54.200e-2245.83Chaperone protein dnaK OS=Rhodobacter sphaeroides ... [more]
DNAK_RHIEC4.200e-2247.79Chaperone protein dnaK OS=Rhizobium etli (strain C... [more]
DNAK_RHIE64.200e-2247.79Chaperone protein dnaK OS=Rhizobium etli (strain C... [more]
DNAK_PROVI4.200e-2246.55Chaperone protein dnaK OS=Prosthecochloris vibriof... [more]
DNAK_MYCSS4.200e-2245.76Chaperone protein dnaK OS=Mycobacterium sp. (strai... [more]
DNAK_MYCSK4.200e-2245.76Chaperone protein dnaK OS=Mycobacterium sp. (strai... [more]
DNAK_MYCSJ4.200e-2245.76Chaperone protein dnaK OS=Mycobacterium sp. (strai... [more]
DNAK_LACBA4.200e-2242.74Chaperone protein dnaK OS=Lactobacillus brevis (st... [more]
DNAK_GUITH4.200e-2246.15Chaperone protein dnaK OS=Guillardia theta GN=dnaK... [more]
DNAK_DESRM4.200e-2243.97Chaperone protein dnaK OS=Desulfotomaculum reducen... [more]

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Properties
Property NameValue
Genbank descriptionC02003A05SK IF1 Citrus clementina cDNA clone C02003A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288666 ID=CX288666; Name=CX288666; organism=Citrus clementina; type=EST; length=342bp
TGTTGATCTTTGATCTGGGTGGCGGTACTTTTGATGTGTCGTTGCTCACT
ATTGAGGAGGGAATCTTTGAAGTGAAGGCTACTGCTGGAGACACTCATCT
TGGTGGTGAGGATTTTGATAACAGAATGGTGAATCATTTTGTTCAGGAGT
TTAAGAGGAAGAACAAGAAGGATATTAGCGGTAACCCTAGAGCTCTTAGG
AGATTGAGGACTGCTTGTGAGAGAGCGAAGAGGACTCTCTCCTCTACTGC
CCAGACTACAATTGAGATTGATTCTTTGTATGAGGGTATTGACTTCTACT
CAACCATAACTCGTGCCAGATTTGAGGAGTTGAACATGGATC
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