CX288666

Overview
NameCX288666
Unique NameCX288666
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length342
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_DESDG (Chaperone protein dnaK OS=Desulfovibrio desulfuricans (strain G20) GN=dnaK PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.200e-22
Identity = 46/88 (52.27%), Postives = 69/88 (78.41%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEI 269
            +FDLGGGTFD+S+L + + + EV+AT GDT LGGEDFD R++N+ V+EF+R+N  D+S +  AL+RL+ A E+AK+ LS++ +T I +
Sbjct:  190 VFDLGGGTFDISILEVGDNVVEVRATNGDTFLGGEDFDQRVINYLVEEFRRENGIDLSRDRMALQRLKEAAEKAKKDLSTSMETEINL 277          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_BACV8 (Chaperone protein dnaK OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=dnaK PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.200e-22
Identity = 53/113 (46.90%), Postives = 76/113 (67.26%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSL--YEGI--DFYSTITRARFEEL 332
            +FDLGGGTFD+S+L    G+FEV +T GDTHLGG+DFD  +++  VQEFK     D++ +P A++RL+ A E+AK  LSS+  T I +  +   +G+      T+TRA+FE L
Sbjct:  190 VFDLGGGTFDISILEFGGGVFEVLSTNGDTHLGGDDFDQVIIDWLVQEFKNDEGADLTKDPMAMQRLKEAAEKAKIELSSSTSTEINLPYIMPVDGMPKHLVKTLTRAKFEAL 302          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_BACFR (Chaperone protein dnaK OS=Bacteroides fragilis GN=dnaK PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.200e-22
Identity = 53/113 (46.90%), Postives = 75/113 (66.37%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYE--GI--DFYSTITRARFEEL 332
            +FDLGGGTFD+S+L    G+FEV +T GDTHLGG+DFD  +++  VQEFK     D++ +P A++RL+ A E+AK  LSS+  T I +  +    G+      T+TRA+FE L
Sbjct:  190 VFDLGGGTFDISILEFGGGVFEVLSTNGDTHLGGDDFDQVIIDWLVQEFKNDEGADLTQDPMAMQRLKEAAEKAKIELSSSTSTEINLPYIMPVGGVPKHLVKTLTRAKFESL 302          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_BACFN (Chaperone protein dnaK OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=dnaK PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.200e-22
Identity = 53/113 (46.90%), Postives = 75/113 (66.37%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYE--GI--DFYSTITRARFEEL 332
            +FDLGGGTFD+S+L    G+FEV +T GDTHLGG+DFD  +++  VQEFK     D++ +P A++RL+ A E+AK  LSS+  T I +  +    G+      T+TRA+FE L
Sbjct:  190 VFDLGGGTFDISILEFGGGVFEVLSTNGDTHLGGDDFDQVIIDWLVQEFKNDEGADLTQDPMAMQRLKEAAEKAKIELSSSTSTEINLPYIMPVGGVPKHLVKTLTRAKFESL 302          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP71_TRYCR (Heat shock 70 kDa protein, mitochondrial OS=Trypanosoma cruzi GN=MTP70 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.486e-22
Identity = 52/113 (46.02%), Postives = 75/113 (66.37%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYSTITRARFEEL 332
            ++DLGGGTFD+S+L I  G+FEVKAT GDTHLGGEDFD  + ++ + EFK+    D+S    AL+R+R A E+AK  LS+T +T + +  +    D       T++R++FE L
Sbjct:  216 VYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLCLSDYILTEFKKSTGIDLSNERMALQRIREAAEKAKCELSTTMETEVNLPFITANQDGAQHVQMTVSRSKFESL 328          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: GRP75_CHICK (Stress-70 protein, mitochondrial OS=Gallus gallus GN=HSPA9 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.486e-22
Identity = 48/91 (52.75%), Postives = 69/91 (75.82%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSL 278
            ++DLGGGTFD+S+L I++G+FEVK+T GDT LGGEDFD  ++ + V+EFKR+   D++ +  AL+R+R A E+AK  LSS+ QT I +  L
Sbjct:  244 VYDLGGGTFDISILEIQKGVFEVKSTNGDTFLGGEDFDQALLQYIVKEFKRETSVDLTKDNMALQRVREASEKAKCELSSSVQTDINLPYL 334          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_SULMW (Chaperone protein dnaK OS=Sulcia muelleri (strain GWSS) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.486e-22
Identity = 51/117 (43.59%), Postives = 80/117 (68.38%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYSTITRARFEELNMD 341
            +++DLGGGTFD+S+L + +G+FEV +T+GDTHLGG+DFD  +++  V+EFK +   D+S +  A +RL+ + E+AK  LSS+ +T I +  +            T+TRA+FEEL+ D
Sbjct:  189 VVYDLGGGTFDISILELGDGVFEVLSTSGDTHLGGDDFDKVIIDWLVKEFKVEQGVDLSNDSMAYQRLKESAEKAKIELSSSTKTEINLPYITATPSGPKHLVKTLTRAKFEELSDD 305          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_SHEPA (Chaperone protein dnaK OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.486e-22
Identity = 55/120 (45.83%), Postives = 75/120 (62.50%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGI----DFYSTITRARFEELNMD 341
            ++DLGGGTFD+S++ I+    E  FEV AT GDTHLGGEDFDNRM+ +   EFK++   D+  +P A++RL+ A E+AK  LSST QT + +  +             ITRA+ E L  D
Sbjct:  191 VYDLGGGTFDISIIEIDSVDGEQTFEVLATNGDTHLGGEDFDNRMIKYLADEFKKEQGLDLRNDPLAMQRLKEAAEKAKIELSSTTQTEVNLPYITADATGPKHLVVKITRAKLESLVED 310          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_SHEHH (Chaperone protein dnaK OS=Shewanella halifaxensis (strain HAW-EB4) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.486e-22
Identity = 55/120 (45.83%), Postives = 75/120 (62.50%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGI----DFYSTITRARFEELNMD 341
            ++DLGGGTFD+S++ I+    E  FEV AT GDTHLGGEDFDNRM+ +   EFK++   D+  +P A++RL+ A E+AK  LSST QT + +  +             ITRA+ E L  D
Sbjct:  191 VYDLGGGTFDISIIEIDSVDGEQTFEVLATNGDTHLGGEDFDNRMIKYLADEFKKEQGLDLRNDPLAMQRLKEAAEKAKIELSSTTQTEVNLPYITADATGPKHLVVKITRAKLESLVED 310          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_SALRD (Chaperone protein dnaK OS=Salinibacter ruber (strain DSM 13855) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.486e-22
Identity = 52/112 (46.43%), Postives = 72/112 (64.29%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMD 341
            ++DLGGGTFDVS+L + +G+FEV AT GDTHLGG++FD R+++H   EF++    D+  +P AL+RL+ A E AK  LSS   TTI +         + T T    + LNMD
Sbjct:  189 VYDLGGGTFDVSILELGDGVFEVNATYGDTHLGGDNFDKRLIDHIADEFEQDTGIDLRDDPMALQRLKEAAEEAKIELSSAKTTTINLP--------FITATDEGPQHLNMD 292          
The following BLAST results are available for this feature:
BLAST of CX288666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_DESDG4.200e-2252.27Chaperone protein dnaK OS=Desulfovibrio desulfuric... [more]
DNAK_BACV84.200e-2246.90Chaperone protein dnaK OS=Bacteroides vulgatus (st... [more]
DNAK_BACFR4.200e-2246.90Chaperone protein dnaK OS=Bacteroides fragilis GN=... [more]
DNAK_BACFN4.200e-2246.90Chaperone protein dnaK OS=Bacteroides fragilis (st... [more]
HSP71_TRYCR5.486e-2246.02Heat shock 70 kDa protein, mitochondrial OS=Trypan... [more]
GRP75_CHICK5.486e-2252.75Stress-70 protein, mitochondrial OS=Gallus gallus ... [more]
DNAK_SULMW5.486e-2243.59Chaperone protein dnaK OS=Sulcia muelleri (strain ... [more]
DNAK_SHEPA5.486e-2245.83Chaperone protein dnaK OS=Shewanella pealeana (str... [more]
DNAK_SHEHH5.486e-2245.83Chaperone protein dnaK OS=Shewanella halifaxensis ... [more]
DNAK_SALRD5.486e-2246.43Chaperone protein dnaK OS=Salinibacter ruber (stra... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02003A05SK IF1 Citrus clementina cDNA clone C02003A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288666 ID=CX288666; Name=CX288666; organism=Citrus clementina; type=EST; length=342bp
TGTTGATCTTTGATCTGGGTGGCGGTACTTTTGATGTGTCGTTGCTCACT
ATTGAGGAGGGAATCTTTGAAGTGAAGGCTACTGCTGGAGACACTCATCT
TGGTGGTGAGGATTTTGATAACAGAATGGTGAATCATTTTGTTCAGGAGT
TTAAGAGGAAGAACAAGAAGGATATTAGCGGTAACCCTAGAGCTCTTAGG
AGATTGAGGACTGCTTGTGAGAGAGCGAAGAGGACTCTCTCCTCTACTGC
CCAGACTACAATTGAGATTGATTCTTTGTATGAGGGTATTGACTTCTACT
CAACCATAACTCGTGCCAGATTTGAGGAGTTGAACATGGATC
back to top