CX288666

Overview
NameCX288666
Unique NameCX288666
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length342
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_RHOPS (Chaperone protein dnaK OS=Rhodopseudomonas palustris (strain BisB5) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.486e-22
Identity = 54/113 (47.79%), Postives = 75/113 (66.37%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYSTITRARFEEL 332
            ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFD R+VN+   EF+++   ++  +  AL+RL+ A E+AK  LSST QT I +  +             +TRA+FE L
Sbjct:  191 VYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDMRLVNYLADEFQKEQGINLRNDKLALQRLKEAAEKAKIELSSTTQTEINLPFITADQSGPKHLTMKLTRAKFEAL 303          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_MYCVP (Chaperone protein dnaK OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.486e-22
Identity = 54/118 (45.76%), Postives = 78/118 (66.10%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIE-----IDSLYEGIDFYSTITRARFEELNMD 341
            L+FDLGGGTFDVSLL I EG+ EV+AT+GD HLGG+D+D+R+V   V +FK  +  D++ +  A++RLR A E+AK  LSS+  T+I      +D+    +     +TRA F+ +  D
Sbjct:  167 LVFDLGGGTFDVSLLEIGEGVVEVRATSGDNHLGGDDWDDRIVEWLVDKFKGTSGIDLTKDKMAMQRLREAAEKAKIELSSSQSTSINLPYITVDADKNPLFLDEQLTRAEFQRITQD 284          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_MYCUA (Chaperone protein dnaK OS=Mycobacterium ulcerans (strain Agy99) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.486e-22
Identity = 54/118 (45.76%), Postives = 78/118 (66.10%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIE-----IDSLYEGIDFYSTITRARFEELNMD 341
            L+FDLGGGTFDVSLL I EG+ EV+AT+GD HLGG+D+D+R+V   V +FK  +  D++ +  A++RLR A E+AK  LSS+  T+I      +D+    +     +TRA F+ +  D
Sbjct:  167 LVFDLGGGTFDVSLLEIGEGVVEVRATSGDNHLGGDDWDDRVVEWLVDKFKGTSGIDLTKDKMAMQRLREAAEKAKIELSSSQSTSINLPYITVDADKNPLFLDEQLTRAEFQRITQD 284          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_MYCTU (Chaperone protein dnaK OS=Mycobacterium tuberculosis GN=dnaK PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 5.486e-22
Identity = 54/118 (45.76%), Postives = 78/118 (66.10%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIE-----IDSLYEGIDFYSTITRARFEELNMD 341
            L+FDLGGGTFDVSLL I EG+ EV+AT+GD HLGG+D+D R+V+  V +FK  +  D++ +  A++RLR A E+AK  LSS+  T+I      +D+    +     +TRA F+ +  D
Sbjct:  167 LVFDLGGGTFDVSLLEIGEGVVEVRATSGDNHLGGDDWDQRVVDWLVDKFKGTSGIDLTKDKMAMQRLREAAEKAKIELSSSQSTSINLPYITVDADKNPLFLDEQLTRAEFQRITQD 284          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_MYCTA (Chaperone protein dnaK OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.486e-22
Identity = 54/118 (45.76%), Postives = 78/118 (66.10%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIE-----IDSLYEGIDFYSTITRARFEELNMD 341
            L+FDLGGGTFDVSLL I EG+ EV+AT+GD HLGG+D+D R+V+  V +FK  +  D++ +  A++RLR A E+AK  LSS+  T+I      +D+    +     +TRA F+ +  D
Sbjct:  167 LVFDLGGGTFDVSLLEIGEGVVEVRATSGDNHLGGDDWDQRVVDWLVDKFKGTSGIDLTKDKMAMQRLREAAEKAKIELSSSQSTSINLPYITVDADKNPLFLDEQLTRAEFQRITQD 284          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_MYCMM (Chaperone protein dnaK OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.486e-22
Identity = 54/118 (45.76%), Postives = 78/118 (66.10%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIE-----IDSLYEGIDFYSTITRARFEELNMD 341
            L+FDLGGGTFDVSLL I EG+ EV+AT+GD HLGG+D+D+R+V   V +FK  +  D++ +  A++RLR A E+AK  LSS+  T+I      +D+    +     +TRA F+ +  D
Sbjct:  167 LVFDLGGGTFDVSLLEIGEGVVEVRATSGDNHLGGDDWDDRVVEWLVDKFKGTSGIDLTKDKMAMQRLREAAEKAKIELSSSQSTSINLPYITVDADKNPLFLDEQLTRAEFQRITQD 284          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_MYCBT (Chaperone protein dnaK OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.486e-22
Identity = 54/118 (45.76%), Postives = 78/118 (66.10%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIE-----IDSLYEGIDFYSTITRARFEELNMD 341
            L+FDLGGGTFDVSLL I EG+ EV+AT+GD HLGG+D+D R+V+  V +FK  +  D++ +  A++RLR A E+AK  LSS+  T+I      +D+    +     +TRA F+ +  D
Sbjct:  167 LVFDLGGGTFDVSLLEIGEGVVEVRATSGDNHLGGDDWDQRVVDWLVDKFKGTSGIDLTKDKMAMQRLREAAEKAKIELSSSQSTSINLPYITVDADKNPLFLDEQLTRAEFQRITQD 284          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_MYCBP (Chaperone protein dnaK OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.486e-22
Identity = 54/118 (45.76%), Postives = 78/118 (66.10%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIE-----IDSLYEGIDFYSTITRARFEELNMD 341
            L+FDLGGGTFDVSLL I EG+ EV+AT+GD HLGG+D+D R+V+  V +FK  +  D++ +  A++RLR A E+AK  LSS+  T+I      +D+    +     +TRA F+ +  D
Sbjct:  167 LVFDLGGGTFDVSLLEIGEGVVEVRATSGDNHLGGDDWDQRVVDWLVDKFKGTSGIDLTKDKMAMQRLREAAEKAKIELSSSQSTSINLPYITVDADKNPLFLDEQLTRAEFQRITQD 284          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_MYCBO (Chaperone protein dnaK OS=Mycobacterium bovis GN=dnaK PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 5.486e-22
Identity = 54/118 (45.76%), Postives = 78/118 (66.10%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIE-----IDSLYEGIDFYSTITRARFEELNMD 341
            L+FDLGGGTFDVSLL I EG+ EV+AT+GD HLGG+D+D R+V+  V +FK  +  D++ +  A++RLR A E+AK  LSS+  T+I      +D+    +     +TRA F+ +  D
Sbjct:  167 LVFDLGGGTFDVSLLEIGEGVVEVRATSGDNHLGGDDWDQRVVDWLVDKFKGTSGIDLTKDKMAMQRLREAAEKAKIELSSSQSTSINLPYITVDADKNPLFLDEQLTRAEFQRITQD 284          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_METRJ (Chaperone protein dnaK OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.486e-22
Identity = 57/115 (49.57%), Postives = 77/115 (66.96%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID------FYSTITRARFEEL 332
            ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFDNR+V +   EFK++   D++ +  AL+RL+ A E+AK  LSS  QT  EI+  Y   D          ++RA+FE L
Sbjct:  191 VYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDNRIVEYLTAEFKKEQGIDLTKDKLALQRLKEAAEKAKIELSSATQT--EINLPYITADNTGPKHLALKLSRAKFESL 303          
The following BLAST results are available for this feature:
BLAST of CX288666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_RHOPS5.486e-2247.79Chaperone protein dnaK OS=Rhodopseudomonas palustr... [more]
DNAK_MYCVP5.486e-2245.76Chaperone protein dnaK OS=Mycobacterium vanbaaleni... [more]
DNAK_MYCUA5.486e-2245.76Chaperone protein dnaK OS=Mycobacterium ulcerans (... [more]
DNAK_MYCTU5.486e-2245.76Chaperone protein dnaK OS=Mycobacterium tuberculos... [more]
DNAK_MYCTA5.486e-2245.76Chaperone protein dnaK OS=Mycobacterium tuberculos... [more]
DNAK_MYCMM5.486e-2245.76Chaperone protein dnaK OS=Mycobacterium marinum (s... [more]
DNAK_MYCBT5.486e-2245.76Chaperone protein dnaK OS=Mycobacterium bovis (str... [more]
DNAK_MYCBP5.486e-2245.76Chaperone protein dnaK OS=Mycobacterium bovis (str... [more]
DNAK_MYCBO5.486e-2245.76Chaperone protein dnaK OS=Mycobacterium bovis GN=d... [more]
DNAK_METRJ5.486e-2249.57Chaperone protein dnaK OS=Methylobacterium radioto... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02003A05SK IF1 Citrus clementina cDNA clone C02003A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288666 ID=CX288666; Name=CX288666; organism=Citrus clementina; type=EST; length=342bp
TGTTGATCTTTGATCTGGGTGGCGGTACTTTTGATGTGTCGTTGCTCACT
ATTGAGGAGGGAATCTTTGAAGTGAAGGCTACTGCTGGAGACACTCATCT
TGGTGGTGAGGATTTTGATAACAGAATGGTGAATCATTTTGTTCAGGAGT
TTAAGAGGAAGAACAAGAAGGATATTAGCGGTAACCCTAGAGCTCTTAGG
AGATTGAGGACTGCTTGTGAGAGAGCGAAGAGGACTCTCTCCTCTACTGC
CCAGACTACAATTGAGATTGATTCTTTGTATGAGGGTATTGACTTCTACT
CAACCATAACTCGTGCCAGATTTGAGGAGTTGAACATGGATC
back to top