CX288666

Overview
NameCX288666
Unique NameCX288666
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length342
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_ERWCT (Chaperone protein dnaK OS=Erwinia carotovora subsp. atroseptica GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.486e-22
Identity = 54/117 (46.15%), Postives = 75/117 (64.10%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEE----GIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGI----DFYSTITRARFEEL 332
            ++DLGGGTFD+S++ I+E      FEV AT GDTHLGGEDFDNRM+N+ V EFK++   D+  +P A++RL+ A E+AK  LSS  QT + +  +             +TRA+ E L
Sbjct:  192 VYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDNRMINYLVDEFKKEQGFDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHLNIKVTRAKLESL 308          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_DICTD (Chaperone protein dnaK OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.486e-22
Identity = 56/117 (47.86%), Postives = 76/117 (64.96%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSL----YEGIDFYSTITRARFEELNMD 341
            L+FDLGGGTFDVS+L I EG+FEV ATAG+  LGG+DFD R+VN  ++ F  ++  ++  +  AL+RL  A E+AK  LSS  QT I +  +       +    T+TRA+FEEL  D
Sbjct:  166 LVFDLGGGTFDVSILEIGEGVFEVIATAGNNRLGGDDFDERIVNWLIENFMEEHGINLREDKTALQRLYEAAEKAKIELSSKLQTEINLPFIAMKGNTPLHLSYTLTRAKFEELTYD 282          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_DESHD (Chaperone protein dnaK OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.486e-22
Identity = 55/117 (47.01%), Postives = 78/117 (66.67%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLY---EG-IDFYSTITRARFEELNMD 341
            L+FDLGGGTFDVSLL + +G+ EVKAT+G+  LGG+DFD R++++ V EFK+    D++ +  AL+RL+ A E+AK  LS  + T + +  +    EG       ITRA+FEEL  D
Sbjct:  166 LVFDLGGGTFDVSLLELSQGMVEVKATSGNNKLGGDDFDQRLIDYMVAEFKKDQGVDLAKDRVALQRLKEAAEKAKVELSGVSTTNVNLPFITMTGEGPAHLDMNITRAKFEELTAD 282          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_CLOTH (Chaperone protein dnaK OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.486e-22
Identity = 52/117 (44.44%), Postives = 78/117 (66.67%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYSTITRARFEELNMD 341
            L+FDLGGGTFDVS+L I +G+FEV AT+G+  LGG+DFD R++++ +  FK+++  D+S +  A++RL+ A E+AK  LS    T I +  +    +       T+TRA+FEEL  D
Sbjct:  166 LVFDLGGGTFDVSILEIGDGVFEVLATSGNNRLGGDDFDQRIIDYLIDLFKKEHGIDLSTDKMAMQRLKEAAEKAKIELSGVTTTNINLPFITADANGPKHLDVTLTRAKFEELTAD 282          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_CHLL2 (Chaperone protein dnaK OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.486e-22
Identity = 53/116 (45.69%), Postives = 77/116 (66.38%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIE---IDSLYEG-IDFYSTITRARFEELNMD 341
            +FDLGGGTFD+S+L + +G+FEVK+T GDTHLGG+DFD +++++   EFK++   D+  +  AL+RL+ A E+AK  LSS   T I    I +  EG       +TRA+FE +  D
Sbjct:  189 VFDLGGGTFDISILELGDGVFEVKSTDGDTHLGGDDFDQKIIDYLADEFKKQEGIDLRNDAIALQRLKEAAEKAKVELSSRTDTEINLPFITATQEGPKHLVINLTRAKFEAMCAD 304          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK2_PROMA (Chaperone protein dnaK2 OS=Prochlorococcus marinus GN=dnaK2 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.486e-22
Identity = 57/116 (49.14%), Postives = 78/116 (67.24%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIE---IDSLYEG---IDFYSTITRARFEEL 332
            L+FDLGGGTFDVS+L + +G+FEV +T+GDTHLGG+DFD  +V+H    FK     D+  + +AL+RL  A E+AK  LS+  Q+ I    I +  EG   +D   T+TRA+FEEL
Sbjct:  189 LVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKVIVDHLAATFKANEGIDLRQDKQALQRLTEAAEKAKIELSNATQSEINLPFITATPEGPKHVDL--TLTRAKFEEL 302          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: HSP7M_SCHPO (Heat shock 70 kDa protein, mitochondrial OS=Schizosaccharomyces pombe GN=ssp1 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 7.164e-22
Identity = 52/113 (46.02%), Postives = 75/113 (66.37%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGI----DFYSTITRARFEEL 332
            +FDLGGGTFD+S+L +  G+FEV++T GDTHLGGEDFD  +V H V+ FK+    D+S +  A++R+R A E+AK  LSS ++T I +  +             I+RA+FE+L
Sbjct:  239 VFDLGGGTFDISILELNNGVFEVRSTNGDTHLGGEDFDVALVRHIVETFKKNEGLDLSKDRLAVQRIREAAEKAKCELSSLSKTDISLPFITADATGPKHINMEISRAQFEKL 351          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_THERP (Chaperone protein dnaK OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=dnaK PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 7.164e-22
Identity = 52/116 (44.83%), Postives = 75/116 (64.66%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGI----DFYSTITRARFEELNMD 341
            ++DLGGGT+D+S+L I EG+F+V AT GDTHLGG+DFD R+++    EFKR+   D+  +  AL+RL+ A E+AK  LSS  QT I +  +            T+TR++ E+L  D
Sbjct:  191 VYDLGGGTYDISILDISEGVFQVLATNGDTHLGGDDFDQRIIDWLCDEFKRETGIDLRQDRMALQRLKEAAEKAKIELSSVQQTEINLPFITADATGPKHLVKTLTRSKLEQLVAD 306          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_RHOS4 (Chaperone protein dnaK OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.164e-22
Identity = 54/117 (46.15%), Postives = 80/117 (68.38%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID--------FYSTITRARFEEL 332
            ++DLGGGTFD+++L I++G+FEVK+T GDT LGGEDFD R+VN+   EFK+++  D++ +  AL+RL+ A E+AK  LSS+ QT  EI+  +  +D            +TRA+ E L
Sbjct:  190 VYDLGGGTFDITILEIDDGLFEVKSTNGDTFLGGEDFDMRIVNYLADEFKKEHGVDLTLDKMALQRLKEAAEKAKIELSSSQQT--EINQPFISMDRNTGQPLHMVMKLTRAKLESL 304          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_RHOS1 (Chaperone protein dnaK OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.164e-22
Identity = 54/117 (46.15%), Postives = 80/117 (68.38%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID--------FYSTITRARFEEL 332
            ++DLGGGTFD+++L I++G+FEVK+T GDT LGGEDFD R+VN+   EFK+++  D++ +  AL+RL+ A E+AK  LSS+ QT  EI+  +  +D            +TRA+ E L
Sbjct:  190 VYDLGGGTFDITILEIDDGLFEVKSTNGDTFLGGEDFDMRIVNYLADEFKKEHGVDLTLDKMALQRLKEAAEKAKIELSSSQQT--EINQPFISMDRNTGQPLHMVMKLTRAKLESL 304          
The following BLAST results are available for this feature:
BLAST of CX288666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_ERWCT5.486e-2246.15Chaperone protein dnaK OS=Erwinia carotovora subsp... [more]
DNAK_DICTD5.486e-2247.86Chaperone protein dnaK OS=Dictyoglomus turgidum (s... [more]
DNAK_DESHD5.486e-2247.01Chaperone protein dnaK OS=Desulfitobacterium hafni... [more]
DNAK_CLOTH5.486e-2244.44Chaperone protein dnaK OS=Clostridium thermocellum... [more]
DNAK_CHLL25.486e-2245.69Chaperone protein dnaK OS=Chlorobium limicola (str... [more]
DNAK2_PROMA5.486e-2249.14Chaperone protein dnaK2 OS=Prochlorococcus marinus... [more]
HSP7M_SCHPO7.164e-2246.02Heat shock 70 kDa protein, mitochondrial OS=Schizo... [more]
DNAK_THERP7.164e-2244.83Chaperone protein dnaK OS=Thermomicrobium roseum (... [more]
DNAK_RHOS47.164e-2246.15Chaperone protein dnaK OS=Rhodobacter sphaeroides ... [more]
DNAK_RHOS17.164e-2246.15Chaperone protein dnaK OS=Rhodobacter sphaeroides ... [more]

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Properties
Property NameValue
Genbank descriptionC02003A05SK IF1 Citrus clementina cDNA clone C02003A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288666 ID=CX288666; Name=CX288666; organism=Citrus clementina; type=EST; length=342bp
TGTTGATCTTTGATCTGGGTGGCGGTACTTTTGATGTGTCGTTGCTCACT
ATTGAGGAGGGAATCTTTGAAGTGAAGGCTACTGCTGGAGACACTCATCT
TGGTGGTGAGGATTTTGATAACAGAATGGTGAATCATTTTGTTCAGGAGT
TTAAGAGGAAGAACAAGAAGGATATTAGCGGTAACCCTAGAGCTCTTAGG
AGATTGAGGACTGCTTGTGAGAGAGCGAAGAGGACTCTCTCCTCTACTGC
CCAGACTACAATTGAGATTGATTCTTTGTATGAGGGTATTGACTTCTACT
CAACCATAACTCGTGCCAGATTTGAGGAGTTGAACATGGATC
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