CX288666

Overview
NameCX288666
Unique NameCX288666
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length342
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_NITWN (Chaperone protein dnaK OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.164e-22
Identity = 54/113 (47.79%), Postives = 75/113 (66.37%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYSTITRARFEEL 332
            ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFD R+VN+   EF+++   ++  +  AL+RL+ A E+AK  LSST QT I +  +             +TRA+FE L
Sbjct:  191 VYDLGGGTFDVSVLEIGDGVFEVKSTNGDTFLGGEDFDMRLVNYLADEFQKEQGINLRNDKLALQRLKEAAEKAKIELSSTTQTEINLPFITADQSGPKHLTMKLTRAKFEAL 303          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_CLONN (Chaperone protein dnaK OS=Clostridium novyi (strain NT) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.164e-22
Identity = 53/118 (44.92%), Postives = 81/118 (68.64%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLY------EGIDFYSTITRARFEELNMD 341
            ++DLGGGTFDVS+L + +G+FEVKAT G+T LGG+DFD +++++  + FK +N  D+  +  AL+RL+ A E+AK  LSS+ +T I +  +       + ID    +TRA+FEEL+ D
Sbjct:  168 VYDLGGGTFDVSILELGDGVFEVKATNGNTKLGGDDFDQKIMDYIAETFKAENGIDLRNDKMALQRLKEAAEKAKIELSSSTKTNINLPFITADATGPKHIDM--DLTRAKFEELSAD 283          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_CHLT3 (Chaperone protein dnaK OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.164e-22
Identity = 51/113 (45.13%), Postives = 76/113 (67.26%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYSTITRARFEEL 332
            +FDLGGGTFD+S+L + +G+FEV++T GDTHLGG++FD  +++    EFK++   D+  +P AL+RL+ A E+AK  LSS+A T + +  +    D        ITRA+FE L
Sbjct:  189 VFDLGGGTFDISVLELGDGVFEVRSTDGDTHLGGDNFDQILIDFLADEFKKQEMIDLRKDPMALQRLKEAAEKAKIELSSSAATEVNLPFITATQDGPKHLVVNITRAKFEGL 301          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_BORRA (Chaperone protein dnaK OS=Borrelia recurrentis (strain A1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.164e-22
Identity = 47/113 (41.59%), Postives = 78/113 (69.03%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYSTITRARFEEL 332
            ++DLGGGTFD+S+L + +G+FEVK+T GDTHLGG++FD+ ++ + + EFK+ +  D+S +  AL+RL+ A E+AK  LS   + +I +  +    +       T+TRA+FE++
Sbjct:  191 VYDLGGGTFDISILELGDGVFEVKSTNGDTHLGGDNFDDEIIKYLITEFKKDSAIDLSNDKMALQRLKEAAEKAKIELSGAQEASINLPFITADANGPKHLQYTLTRAKFEQM 303          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_BORDL (Chaperone protein dnaK OS=Borrelia duttonii (strain Ly) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.164e-22
Identity = 47/113 (41.59%), Postives = 78/113 (69.03%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYSTITRARFEEL 332
            ++DLGGGTFD+S+L + +G+FEVK+T GDTHLGG++FD+ ++ + + EFK+ +  D+S +  AL+RL+ A E+AK  LS   + +I +  +    +       T+TRA+FE++
Sbjct:  191 VYDLGGGTFDISILELGDGVFEVKSTNGDTHLGGDNFDDEIIKYLITEFKKDSAIDLSNDKMALQRLKEAAEKAKIELSGAQEASINLPFITADANGPKHLQYTLTRAKFEQM 303          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK1_PHOPR (Chaperone protein dnaK 1 OS=Photobacterium profundum GN=dnaK1 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.164e-22
Identity = 53/120 (44.17%), Postives = 77/120 (64.17%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEE----GIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGI----DFYSTITRARFEELNMD 341
            ++DLGGGTFD+S++ I+E      FEV +T GDTHLGGEDFDNR++N+ V+EFK++   D+  +P A++RL+ A E+AK  LSS  QT + +  +             +TRA+ E L  D
Sbjct:  192 VYDLGGGTFDISIIEIDEVEGEKTFEVLSTNGDTHLGGEDFDNRLINYLVEEFKKEQGMDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVED 311          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_THEPX (Chaperone protein dnaK OS=Thermoanaerobacter sp. (strain X514) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.357e-22
Identity = 55/119 (46.22%), Postives = 78/119 (65.55%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLY------EGIDFYSTITRARFEELNMD 341
            +++DLGGGTFDVS+L I EG+FEV AT+G+ HLGG+DFD R+++     FK+++  D+  +  AL+RL+ A ERAK  LSS   T I +  +       + ID    +TRA+FEEL  D
Sbjct:  166 MVYDLGGGTFDVSILEIGEGVFEVLATSGNNHLGGDDFDQRIIDWLADNFKKEHGIDLRNDRMALQRLKDAAERAKIELSSATVTNINLPFITADATGPKHIDV--NLTRAKFEELISD 282          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_SALAI (Chaperone protein dnaK OS=Salinispora arenicola (strain CNS-205) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.357e-22
Identity = 51/117 (43.59%), Postives = 78/117 (66.67%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEG----IDFYSTITRARFEELNMD 341
            L+FDLGGGTFDVSLL + EG+ EVK+T+GD  LGG+D+D R+++H V+ F  ++  D+S +  A++RL+ A E+AK  LS+ A + I +  +  G    +    T+TRA F+ +  D
Sbjct:  167 LVFDLGGGTFDVSLLELAEGVIEVKSTSGDNLLGGDDWDQRIIDHLVKTFNGEHGIDLSQDKMAMQRLKEAAEKAKIELSAAATSNINLPYITAGAAGPLHLDVTLTRAEFQRMTQD 283          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_PROM5 (Chaperone protein dnaK OS=Prochlorococcus marinus (strain MIT 9515) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.357e-22
Identity = 54/114 (47.37%), Postives = 73/114 (64.04%), Query Frame = 3
Query:    3 LIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID----FYSTITRARFEEL 332
            L+FDLGGGTFDVS+L + +G+FEV +T+GDTHLGG+DFD  +VNH    FK     D+  + +AL+RL  A E+AK  LS+  Q+ I +  +    D        +TRA FEEL
Sbjct:  189 LVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDRCIVNHLASVFKSNEGIDLREDKQALQRLTEAAEKAKIELSNATQSEINLPFITATPDGPKHLDLNLTRANFEEL 302          
BLAST of CX288666 vs. ExPASy Swiss-Prot
Match: DNAK_PARUW (Chaperone protein dnaK OS=Protochlamydia amoebophila (strain UWE25) GN=dnaK PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.357e-22
Identity = 54/118 (45.76%), Postives = 78/118 (66.10%), Query Frame = 3
Query:    6 IFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGID------FYSTITRARFEELNMD 341
            +FDLGGGTFD+S+L I +G+FEV +T+GDTHLGG+DFDN ++N  ++ FK++   D+  +  AL+RLR A E+AK  LS   QT  EI+  +  +D         T+TR++ E L  D
Sbjct:  198 VFDLGGGTFDISVLEIGDGVFEVLSTSGDTHLGGDDFDNAILNWMLETFKQEQGIDLRNDKMALQRLRDAAEKAKIELSGVQQT--EINQPFITMDASGPKHLTMTLTRSKLESLTHD 313          
The following BLAST results are available for this feature:
BLAST of CX288666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_NITWN7.164e-2247.79Chaperone protein dnaK OS=Nitrobacter winogradskyi... [more]
DNAK_CLONN7.164e-2244.92Chaperone protein dnaK OS=Clostridium novyi (strai... [more]
DNAK_CHLT37.164e-2245.13Chaperone protein dnaK OS=Chloroherpeton thalassiu... [more]
DNAK_BORRA7.164e-2241.59Chaperone protein dnaK OS=Borrelia recurrentis (st... [more]
DNAK_BORDL7.164e-2241.59Chaperone protein dnaK OS=Borrelia duttonii (strai... [more]
DNAK1_PHOPR7.164e-2244.17Chaperone protein dnaK 1 OS=Photobacterium profund... [more]
DNAK_THEPX9.357e-2246.22Chaperone protein dnaK OS=Thermoanaerobacter sp. (... [more]
DNAK_SALAI9.357e-2243.59Chaperone protein dnaK OS=Salinispora arenicola (s... [more]
DNAK_PROM59.357e-2247.37Chaperone protein dnaK OS=Prochlorococcus marinus ... [more]
DNAK_PARUW9.357e-2245.76Chaperone protein dnaK OS=Protochlamydia amoebophi... [more]

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Properties
Property NameValue
Genbank descriptionC02003A05SK IF1 Citrus clementina cDNA clone C02003A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288666 ID=CX288666; Name=CX288666; organism=Citrus clementina; type=EST; length=342bp
TGTTGATCTTTGATCTGGGTGGCGGTACTTTTGATGTGTCGTTGCTCACT
ATTGAGGAGGGAATCTTTGAAGTGAAGGCTACTGCTGGAGACACTCATCT
TGGTGGTGAGGATTTTGATAACAGAATGGTGAATCATTTTGTTCAGGAGT
TTAAGAGGAAGAACAAGAAGGATATTAGCGGTAACCCTAGAGCTCTTAGG
AGATTGAGGACTGCTTGTGAGAGAGCGAAGAGGACTCTCTCCTCTACTGC
CCAGACTACAATTGAGATTGATTCTTTGTATGAGGGTATTGACTTCTACT
CAACCATAACTCGTGCCAGATTTGAGGAGTTGAACATGGATC
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