CX288674

Overview
NameCX288674
Unique NameCX288674
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length438
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UBC20_ARATH (Ubiquitin carrier protein E2 20 OS=Arabidopsis thaliana GN=UBC20 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.677e-17
Identity = 39/82 (47.56%), Postives = 55/82 (67.07%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDK 247
            + +S+ F  DYPFKPPKV F T  FHPN++  G+ICLDIL+++WS A  +  +LLSI SLL +PN   PL  + A ++   +
Sbjct:   84 YRLSLSFSNDYPFKPPKVKFETCCFHPNVDVYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNTQAAQLWSNQE 165          
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UBC12_DICDI (NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium discoideum GN=ube2m PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.677e-17
Identity = 37/90 (41.11%), Postives = 55/90 (61.11%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTAR 271
            F  +I+ P  YP+ PPKV   T V+HPNI+  G +CL+IL++ W P L I  V+  + +L  +PNPDDPL  + A +   +K  +E+  R
Sbjct:  124 FQFTINIPSTYPYDPPKVHCDTLVYHPNIDLEGHVCLNILRQDWMPVLNIGTVIFGLMTLFLEPNPDDPLNKDAAQLMIDNKKTFEANVR 213          
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UBC16_SCHPO (Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccharomyces pombe GN=ubc16 PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.309e-16
Identity = 43/101 (42.57%), Postives = 61/101 (60.40%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKT-DKAKYESTARSWTQKYAMG 298
            +++ IH    YP  PP V F+TK+ HPNI+ +NG +C+DILK  WSPA ++    L+I SLL++ +   PL  + A + +T DK  Y S  R  T  YA G
Sbjct:   54 WVLDIHVHEGYPISPPSVYFQTKIVHPNISWTNGEVCMDILKTHWSPAWSLQSACLAIISLLSNYDASSPLNVDAAKLLRTGDKTAYNSLVRCTTYLYAKG 154          
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UBC12_DROME (NEDD8-conjugating enzyme Ubc12 OS=Drosophila melanogaster GN=CG7375 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.309e-16
Identity = 34/90 (37.78%), Postives = 61/90 (67.78%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTAR 271
            F+ +     +YP +PPKV   T+V+HPNI+ +G++CL+IL+E W+P L I+ ++  +  L  +PNP+DPL  E A + +T++ ++E+  +
Sbjct:   73 FVFNFRVGSNYPHEPPKVKCATQVYHPNIDLDGNVCLNILREDWNPVLNINSIVYGLQFLFLEPNPEDPLNKEAADVLQTNRRQFENNVK 162          
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UBC12_CANGA (NEDD8-conjugating enzyme UBC12 OS=Candida glabrata GN=UBC12 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.309e-16
Identity = 39/90 (43.33%), Postives = 55/90 (61.11%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTAR 271
            F  +  F   YP  PPKV    K+FHPNI+ +G ICL+IL+E WSPAL +  ++L + SL  +PN +DPL  E A +   DK ++ +  R
Sbjct:   81 FRFTATFLETYPIDPPKVICNNKIFHPNIDPHGKICLNILREDWSPALDLQCIVLGLLSLFQEPNGNDPLNKEAAEVLNKDKLEFGNLVR 170          
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UBC9_XENTR (SUMO-conjugating enzyme UBC9 OS=Xenopus tropicalis GN=ube2i PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.710e-16
Identity = 40/99 (40.40%), Postives = 59/99 (59.60%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 292
            F + + F  DYP  PPK  F   +FHPN+  +G++CL IL+E   W PA+TI ++LL I  LL +PN  DP   E   +Y  ++ +YE   R+  +K+A
Sbjct:   58 FKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156          
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UBC9_XENLA (SUMO-conjugating enzyme UBC9 OS=Xenopus laevis GN=ube2i PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.710e-16
Identity = 40/99 (40.40%), Postives = 59/99 (59.60%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 292
            F + + F  DYP  PPK  F   +FHPN+  +G++CL IL+E   W PA+TI ++LL I  LL +PN  DP   E   +Y  ++ +YE   R+  +K+A
Sbjct:   58 FKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156          
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UBC9_SPETR (SUMO-conjugating enzyme UBC9 OS=Spermophilus tridecemlineatus GN=UBE2I PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.710e-16
Identity = 40/99 (40.40%), Postives = 59/99 (59.60%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 292
            F + + F  DYP  PPK  F   +FHPN+  +G++CL IL+E   W PA+TI ++LL I  LL +PN  DP   E   +Y  ++ +YE   R+  +K+A
Sbjct:   58 FKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156          
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UBC9_RAT (SUMO-conjugating enzyme UBC9 OS=Rattus norvegicus GN=Ube2i PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.710e-16
Identity = 40/99 (40.40%), Postives = 59/99 (59.60%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 292
            F + + F  DYP  PPK  F   +FHPN+  +G++CL IL+E   W PA+TI ++LL I  LL +PN  DP   E   +Y  ++ +YE   R+  +K+A
Sbjct:   58 FKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156          
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UBC9_MOUSE (SUMO-conjugating enzyme UBC9 OS=Mus musculus GN=Ube2i PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.710e-16
Identity = 40/99 (40.40%), Postives = 59/99 (59.60%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKE--QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 292
            F + + F  DYP  PPK  F   +FHPN+  +G++CL IL+E   W PA+TI ++LL I  LL +PN  DP   E   +Y  ++ +YE   R+  +K+A
Sbjct:   58 FKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFA 156          
The following BLAST results are available for this feature:
BLAST of CX288674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
UBC20_ARATH7.677e-1747.56Ubiquitin carrier protein E2 20 OS=Arabidopsis tha... [more]
UBC12_DICDI7.677e-1741.11NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium di... [more]
UBC16_SCHPO1.309e-1642.57Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccha... [more]
UBC12_DROME1.309e-1637.78NEDD8-conjugating enzyme Ubc12 OS=Drosophila melan... [more]
UBC12_CANGA1.309e-1643.33NEDD8-conjugating enzyme UBC12 OS=Candida glabrata... [more]
UBC9_XENTR1.710e-1640.40SUMO-conjugating enzyme UBC9 OS=Xenopus tropicalis... [more]
UBC9_XENLA1.710e-1640.40SUMO-conjugating enzyme UBC9 OS=Xenopus laevis GN=... [more]
UBC9_SPETR1.710e-1640.40SUMO-conjugating enzyme UBC9 OS=Spermophilus tride... [more]
UBC9_RAT1.710e-1640.40SUMO-conjugating enzyme UBC9 OS=Rattus norvegicus ... [more]
UBC9_MOUSE1.710e-1640.40SUMO-conjugating enzyme UBC9 OS=Mus musculus GN=Ub... [more]

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Properties
Property NameValue
Genbank descriptionC02003B02SK IF1 Citrus clementina cDNA clone C02003B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288674 ID=CX288674; Name=CX288674; organism=Citrus clementina; type=EST; length=438bp
ATTTCTAGTTTCAATCCATTTCCCTCCTGATTATCCATTCAAACCACCTA
AGGTCGCGTTTAGGACCAAGGTTTTTCACCCAAATATTAACAGCAATGGC
AGTATATGTCTCGACATACTAAAAGAGCAGTGGAGTCCTGCCCTCACTAT
ATCTAAGGTATTGCTCTCAATTTGTTCATTGTTGACGGACCCAAACCCAG
ATGACCCTTTGGTGCCAGAAATAGCTCACATGTACAAGACAGACAAGGCT
AAGTATGAATCAACTGCTAGGAGCTGGACCCAAAAGTATGCCATGGGCTA
AGTATGAAATCATCTAGGACATAGTCTTTCATCACATAATATTTATGTAT
AAAATGAAGTGTGATATGCTCGTCTTCCGTCTTTGTTTTTGCCTTTTGGA
AATGATAATTGAAGATGGTGTTCATGCACTGTCTTCCA
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