CX288674

Overview
NameCX288674
Unique NameCX288674
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length438
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.257e-43
Identity = 78/98 (79.59%), Postives = 87/98 (88.78%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 295
            F ++IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTD+ +Y   AR WTQKYAM
Sbjct:   50 FFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM 147          
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.641e-43
Identity = 78/98 (79.59%), Postives = 87/98 (88.78%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 295
            F ++IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTD+ KY   AR WT+KYAM
Sbjct:   50 FFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAREWTRKYAM 147          
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 1.641e-43
Identity = 77/98 (78.57%), Postives = 89/98 (90.82%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 295
            F +SIHFP DYP KPPK+A  TK++HPNINSNG+ICLDILK+QWSPALTISKVLLSICSLLTD NPDDPLVPEIAH+YK D+ KYE+TA+ WT+KYA+
Sbjct:   50 FFLSIHFPTDYPLKPPKIALTTKIYHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDANPDDPLVPEIAHIYKQDRKKYEATAKEWTKKYAV 147          
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UB2D3_RAT (Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norvegicus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 2.143e-43
Identity = 78/98 (79.59%), Postives = 87/98 (88.78%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 295
            F ++IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTD+ KY   +R WTQKYAM
Sbjct:   50 FFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 147          
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UB2D3_PONAB (Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 2.143e-43
Identity = 78/98 (79.59%), Postives = 87/98 (88.78%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 295
            F ++IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTD+ KY   +R WTQKYAM
Sbjct:   50 FFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 147          
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UB2D3_MOUSE (Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 2.143e-43
Identity = 78/98 (79.59%), Postives = 87/98 (88.78%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 295
            F ++IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTD+ KY   +R WTQKYAM
Sbjct:   50 FFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 147          
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UB2D3_MACFA (Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fascicularis GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 2.143e-43
Identity = 78/98 (79.59%), Postives = 87/98 (88.78%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 295
            F ++IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTD+ KY   +R WTQKYAM
Sbjct:   50 FFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 147          
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UB2D3_HUMAN (Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens GN=UBE2D3 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 2.143e-43
Identity = 78/98 (79.59%), Postives = 87/98 (88.78%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 295
            F ++IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTD+ KY   +R WTQKYAM
Sbjct:   50 FFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 147          
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UB2D2_PIG (Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 2.143e-43
Identity = 78/98 (79.59%), Postives = 87/98 (88.78%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 295
            F ++IHFP DYPFKPPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YKTD+ KY   +R WTQKYAM
Sbjct:   50 FFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 147          
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 2.799e-43
Identity = 76/98 (77.55%), Postives = 87/98 (88.78%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 295
            F +++HFP DYPFKPPK+AF TK++HPNINSNGSICLDIL+ QWSPALT+SKVLLSICSLL DPNPDDPLVP+IA +YK+DK KY   AR WTQKYAM
Sbjct:   50 FFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM 147          
The following BLAST results are available for this feature:
BLAST of CX288674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
UBC2_CAEEL1.257e-4379.59Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]
UBCD1_DROME1.641e-4379.59Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC4_CANAL1.641e-4378.57Ubiquitin-conjugating enzyme E2 4 OS=Candida albic... [more]
UB2D3_RAT2.143e-4379.59Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norve... [more]
UB2D3_PONAB2.143e-4379.59Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii... [more]
UB2D3_MOUSE2.143e-4379.59Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus... [more]
UB2D3_MACFA2.143e-4379.59Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fasci... [more]
UB2D3_HUMAN2.143e-4379.59Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens... [more]
UB2D2_PIG2.143e-4379.59Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa G... [more]
UB2D1_MOUSE2.799e-4377.55Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionC02003B02SK IF1 Citrus clementina cDNA clone C02003B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288674 ID=CX288674; Name=CX288674; organism=Citrus clementina; type=EST; length=438bp
ATTTCTAGTTTCAATCCATTTCCCTCCTGATTATCCATTCAAACCACCTA
AGGTCGCGTTTAGGACCAAGGTTTTTCACCCAAATATTAACAGCAATGGC
AGTATATGTCTCGACATACTAAAAGAGCAGTGGAGTCCTGCCCTCACTAT
ATCTAAGGTATTGCTCTCAATTTGTTCATTGTTGACGGACCCAAACCCAG
ATGACCCTTTGGTGCCAGAAATAGCTCACATGTACAAGACAGACAAGGCT
AAGTATGAATCAACTGCTAGGAGCTGGACCCAAAAGTATGCCATGGGCTA
AGTATGAAATCATCTAGGACATAGTCTTTCATCACATAATATTTATGTAT
AAAATGAAGTGTGATATGCTCGTCTTCCGTCTTTGTTTTTGCCTTTTGGA
AATGATAATTGAAGATGGTGTTCATGCACTGTCTTCCA
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