CX288674

Overview
NameCX288674
Unique NameCX288674
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length438
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UBE2F_RAT (NEDD8-conjugating enzyme UBE2F OS=Rattus norvegicus GN=Ube2f PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.820e-11
Identity = 38/104 (36.54%), Postives = 51/104 (49.04%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 292
            F      P  Y   PPKV   TK++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  E A  +  DK  +      + ++YA
Sbjct:   81 FQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRDKVDEYIKRYA 184          
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UBE2F_BOVIN (NEDD8-conjugating enzyme UBE2F OS=Bos taurus GN=UBE2F PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.820e-11
Identity = 37/104 (35.58%), Postives = 52/104 (50.00%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 292
            F      P  Y   PPKV   T+++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  E A  +  DK  + +    + ++YA
Sbjct:   81 FQFETEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVEDYIKRYA 184          
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UBCX_PICAN (Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia angusta GN=PEX4 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.820e-11
Identity = 39/119 (32.77%), Postives = 58/119 (48.74%), Query Frame = 2
Query:    8 VSIHFPPDYPFKPPKVAFRT----------------------KVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK-TDKAKYESTARSWTQKYA 292
            + I  P +YP  PPK+ F                        K+ HPN+N   G ICLDIL+++WSPA T+   L++I  LL +P P  PL  ++A++ K  D   Y+     +  KY+
Sbjct:   63 LEIDIPTNYPLDPPKIKFVVFGEEKIRQLQRKTSSGARKVCYKMPHPNVNFKTGEICLDILQQKWSPAWTLQSALVAIVVLLANPEPLSPLNIDMANLLKCDDTTAYKDLVHYYIAKYS 181          
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UBC7_ARATH (Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis thaliana GN=UBC7 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.820e-11
Identity = 31/102 (30.39%), Postives = 54/102 (52.94%), Query Frame = 2
Query:   20 FPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQK 286
            FP +YP  PP V F + ++HPN+ S+G +C+ IL              E+W+P  T+  ++LSI S+L+ PN + P   E A  ++  + +++       +K
Sbjct:   60 FPQNYPNSPPTVRFTSDMWHPNVYSDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWRDKRDEFKKKVSRCVRK 161          
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UBC13_ARATH (Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis thaliana GN=UBC13 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.820e-11
Identity = 31/108 (28.70%), Postives = 55/108 (50.93%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQK 286
            F   + FP +YP  PP V F + ++HPN+  +G +C+ IL              E+W+P  T+  ++LSI S+L+ PN + P   E A  ++  + +++       +K
Sbjct:   54 FYAIMSFPQNYPNSPPTVRFTSDIWHPNVYPDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWREKRDEFKKKVSRCVRK 161          
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UB2FA_MOUSE (NEDD8-conjugating enzyme UBE2F OS=Mus musculus GN=Ube2f PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.820e-11
Identity = 38/104 (36.54%), Postives = 51/104 (49.04%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 292
            F      P  Y   PPKV   TK++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  E A  +  DK  +      + ++YA
Sbjct:   81 FQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRDKVDEYIKRYA 184          
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UBE2F_DANRE (NEDD8-conjugating enzyme UBE2F OS=Danio rerio GN=ube2f PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 8.221e-11
Identity = 37/104 (35.58%), Postives = 53/104 (50.96%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 292
            F   I  P  Y   PPKV   T+++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  + A  +  DK  + +  + + + YA
Sbjct:   81 FQFEIEVPEAYNMVPPKVKCLTRIWHPNIAETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIDAAEHHLRDKEDFRNKVQDFIKNYA 184          
The following BLAST results are available for this feature:
BLAST of CX288674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
UBE2F_RAT4.820e-1136.54NEDD8-conjugating enzyme UBE2F OS=Rattus norvegicu... [more]
UBE2F_BOVIN4.820e-1135.58NEDD8-conjugating enzyme UBE2F OS=Bos taurus GN=UB... [more]
UBCX_PICAN4.820e-1132.77Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia a... [more]
UBC7_ARATH4.820e-1130.39Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis t... [more]
UBC13_ARATH4.820e-1128.70Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis ... [more]
UB2FA_MOUSE4.820e-1136.54NEDD8-conjugating enzyme UBE2F OS=Mus musculus GN=... [more]
UBE2F_DANRE8.221e-1135.58NEDD8-conjugating enzyme UBE2F OS=Danio rerio GN=u... [more]

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Properties
Property NameValue
Genbank descriptionC02003B02SK IF1 Citrus clementina cDNA clone C02003B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288674 ID=CX288674; Name=CX288674; organism=Citrus clementina; type=EST; length=438bp
ATTTCTAGTTTCAATCCATTTCCCTCCTGATTATCCATTCAAACCACCTA
AGGTCGCGTTTAGGACCAAGGTTTTTCACCCAAATATTAACAGCAATGGC
AGTATATGTCTCGACATACTAAAAGAGCAGTGGAGTCCTGCCCTCACTAT
ATCTAAGGTATTGCTCTCAATTTGTTCATTGTTGACGGACCCAAACCCAG
ATGACCCTTTGGTGCCAGAAATAGCTCACATGTACAAGACAGACAAGGCT
AAGTATGAATCAACTGCTAGGAGCTGGACCCAAAAGTATGCCATGGGCTA
AGTATGAAATCATCTAGGACATAGTCTTTCATCACATAATATTTATGTAT
AAAATGAAGTGTGATATGCTCGTCTTCCGTCTTTGTTTTTGCCTTTTGGA
AATGATAATTGAAGATGGTGTTCATGCACTGTCTTCCA
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