CX288674

Overview
NameCX288674
Unique NameCX288674
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length438
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UB2E3_MOUSE (Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus GN=Ube2e3 PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 5.851e-33
Identity = 65/97 (67.01%), Postives = 77/97 (79.38%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 292
            F + I F  DYPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV  IA  Y T++A+++  AR WT++YA
Sbjct:  110 FFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYA 206          
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UB2E3_HUMAN (Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens GN=UBE2E3 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.851e-33
Identity = 65/97 (67.01%), Postives = 77/97 (79.38%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 292
            F + I F  DYPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV  IA  Y T++A+++  AR WT++YA
Sbjct:  110 FFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYA 206          
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UB2E3_BOVIN (Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus GN=UBE2E3 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.851e-33
Identity = 65/97 (67.01%), Postives = 77/97 (79.38%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 292
            F + I F  DYPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV  IA  Y T++A+++  AR WT++YA
Sbjct:  110 FFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYA 206          
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UBC31_ARATH (Probable ubiquitin carrier protein E2 31 OS=Arabidopsis thaliana GN=UBC31 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.349e-29
Identity = 55/97 (56.70%), Postives = 75/97 (77.32%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 292
            F +SI FP DYPFKPPK  F+T ++HPNIN  GSIC++ILK++W+PAL + KVLLSI  LL  PNPDDPLVPEI  ++K ++ +++  AR +T ++A
Sbjct:   56 FNLSIKFPTDYPFKPPKFTFKTPIYHPNINDEGSICMNILKDKWTPALMVEKVLLSILLLLEKPNPDDPLVPEIGQLFKNNRFQFDQRAREFTARHA 152          
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 6.265e-27
Identity = 53/98 (54.08%), Postives = 73/98 (74.49%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 295
            F + +  P +YP   PKV F TK++HPN++ +G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KT++A+   TAR+WT+ YAM
Sbjct:   52 FKLELFLPEEYPMAAPKVRFMTKIYHPNVDKSGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UBE2N_PONAB (Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii GN=UBE2N PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.823e-26
Identity = 53/98 (54.08%), Postives = 72/98 (73.47%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 295
            F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KT++A+   TAR+WT+ YAM
Sbjct:   52 FKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UBE2N_MOUSE (Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.823e-26
Identity = 53/98 (54.08%), Postives = 72/98 (73.47%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 295
            F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KT++A+   TAR+WT+ YAM
Sbjct:   52 FKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UBE2N_HUMAN (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.823e-26
Identity = 53/98 (54.08%), Postives = 72/98 (73.47%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 295
            F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KT++A+   TAR+WT+ YAM
Sbjct:   52 FKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UBE2N_BOVIN (Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN=UBE2N PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.823e-26
Identity = 53/98 (54.08%), Postives = 72/98 (73.47%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 295
            F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KT++A+   TAR+WT+ YAM
Sbjct:   52 FKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UBE2N_DROME (Ubiquitin-conjugating enzyme E2 N OS=Drosophila melanogaster GN=ben PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.110e-26
Identity = 52/98 (53.06%), Postives = 71/98 (72.45%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 295
            F + +  P DYP   PKV F TK++HPNI+  G ICLD+LK++WSPAL I  +LLSI +LL+ PNPDDPL  ++A ++K ++A+    AR WTQKYA+
Sbjct:   52 FKLELFLPEDYPMSAPKVRFITKIYHPNIDRLGRICLDVLKDKWSPALQIRTILLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAREWTQKYAV 149          
The following BLAST results are available for this feature:
BLAST of CX288674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
UB2E3_MOUSE5.851e-3367.01Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus... [more]
UB2E3_HUMAN5.851e-3367.01Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens... [more]
UB2E3_BOVIN5.851e-3367.01Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus G... [more]
UBC31_ARATH1.349e-2956.70Probable ubiquitin carrier protein E2 31 OS=Arabid... [more]
UBE2N_MACFA6.265e-2754.08Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic... [more]
UBE2N_PONAB1.823e-2654.08Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii ... [more]
UBE2N_MOUSE1.823e-2654.08Ubiquitin-conjugating enzyme E2 N OS=Mus musculus ... [more]
UBE2N_HUMAN1.823e-2654.08Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ... [more]
UBE2N_BOVIN1.823e-2654.08Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN... [more]
UBE2N_DROME3.110e-2653.06Ubiquitin-conjugating enzyme E2 N OS=Drosophila me... [more]

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Properties
Property NameValue
Genbank descriptionC02003B02SK IF1 Citrus clementina cDNA clone C02003B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288674 ID=CX288674; Name=CX288674; organism=Citrus clementina; type=EST; length=438bp
ATTTCTAGTTTCAATCCATTTCCCTCCTGATTATCCATTCAAACCACCTA
AGGTCGCGTTTAGGACCAAGGTTTTTCACCCAAATATTAACAGCAATGGC
AGTATATGTCTCGACATACTAAAAGAGCAGTGGAGTCCTGCCCTCACTAT
ATCTAAGGTATTGCTCTCAATTTGTTCATTGTTGACGGACCCAAACCCAG
ATGACCCTTTGGTGCCAGAAATAGCTCACATGTACAAGACAGACAAGGCT
AAGTATGAATCAACTGCTAGGAGCTGGACCCAAAAGTATGCCATGGGCTA
AGTATGAAATCATCTAGGACATAGTCTTTCATCACATAATATTTATGTAT
AAAATGAAGTGTGATATGCTCGTCTTCCGTCTTTGTTTTTGCCTTTTGGA
AATGATAATTGAAGATGGTGTTCATGCACTGTCTTCCA
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