CX288674

Overview
NameCX288674
Unique NameCX288674
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length438
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UBC2_CANGA (Ubiquitin-conjugating enzyme E2 2 OS=Candida glabrata GN=UBC2 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.071e-18
Identity = 42/97 (43.30%), Postives = 61/97 (62.89%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKY-----ESTARSW 277
            F + + F  DYP KPP V F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A ++K  K++Y     E+  +SW
Sbjct:   53 FRLLLEFDEDYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYIKRVKETVEKSW 149          
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UBC2_DICDI (Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium discoideum GN=ubc2 PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.399e-18
Identity = 44/98 (44.90%), Postives = 63/98 (64.29%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKY-----ESTARSWT 280
            F +S+ F  +YP   P V F +K+FHPN+ ++GSICLDIL+ QWSP   I+ +L SI SLL DPNP+ P   E A +++ +K +Y     E   +SW+
Sbjct:   53 FKLSLQFSEEYPNDAPTVKFLSKMFHPNVYADGSICLDILQNQWSPIYDIAAILTSIQSLLCDPNPNSPANSESARLFRENKREYNRKVKEIVEQSWS 150          
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.399e-18
Identity = 40/86 (46.51%), Postives = 60/86 (69.77%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYE 259
            F +S+ F  +YP KPP V F +K+FHPN+ ++GSICLDIL+ +WSP   ++ +L SI SLL +PNP+ P     A +Y+ ++ +YE
Sbjct:   53 FKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYE 138          
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UBC2_YEAST (Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces cerevisiae GN=RAD6 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.117e-18
Identity = 41/97 (42.27%), Postives = 61/97 (62.89%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKY-----ESTARSW 277
            F + + F  +YP KPP V F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A ++K  K++Y     E+  +SW
Sbjct:   53 FRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSW 149          
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UBC2_TRIHA (Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma harzianum GN=UBC2 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.117e-18
Identity = 42/97 (43.30%), Postives = 62/97 (63.92%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKY-----ESTARSW 277
            F + + F   YP KPP+V F +++FHPN+ +NG +CLDIL+ +WSP   ++ VL SI SLL DPN   P   E +++YK ++ +Y     E+  RSW
Sbjct:   53 FRLVMQFEEQYPNKPPQVKFISQMFHPNVYANGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRREYIKRVRETVERSW 149          
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UBC2_ASHGO (Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossypii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 3.117e-18
Identity = 41/97 (42.27%), Postives = 61/97 (62.89%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKY-----ESTARSW 277
            F + + F  +YP KPP V F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A ++K  K++Y     E+  +SW
Sbjct:   53 FRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSW 149          
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UBC84_DROME (Ubiquitin-conjugating enzyme E2-18 kDa OS=Drosophila melanogaster GN=Ubc84D PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 4.071e-18
Identity = 36/98 (36.73%), Postives = 62/98 (63.27%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 292
            F + I+FPP YPF PPK+ F+TK++HPN++  G +CL I+  + W P     +VL ++ +++ +P P+ PL  ++A  +  +  K+  TA  +T+K A
Sbjct:   51 FRIEINFPPQYPFMPPKILFKTKIYHPNVDEKGEVCLPIISTDNWKPTTRTEQVLQALVAIVHNPEPEHPLRSDLAEEFVREHKKFMKTAEEFTKKNA 148          
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UBC2_DEBHA (Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces hansenii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.943e-18
Identity = 41/99 (41.41%), Postives = 61/99 (61.62%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKY-----ESTARSWTQ 283
            F + + F   YP KPP V F +++FHPN+ ++G +CLDIL+ +WSP   +S +L SI SLL DPN   P   E A++YK  +++Y     E+   SW +
Sbjct:   53 FRLILQFDEQYPNKPPSVKFISEMFHPNVYASGELCLDILQNRWSPTYDVSSILTSIQSLLNDPNISSPANVEAANLYKDHRSQYIKRVRETVENSWNE 151          
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UBC2_USTMA (Ubiquitin-conjugating enzyme E2 2 OS=Ustilago maydis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 9.068e-18
Identity = 39/85 (45.88%), Postives = 56/85 (65.88%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKY 256
            F + + F   YP KPP V F +K+FHPN+ +NG +CLDIL+ +WSP   ++ +L SI SLL DPNP+ P   E A +Y+ +  +Y
Sbjct:   53 FKLVLTFDESYPNKPPTVKFLSKMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLHDPNPNSPANAEAASLYRENMKEY 137          
BLAST of CX288674 vs. ExPASy Swiss-Prot
Match: UBC2_KLULA (Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces lactis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 9.068e-18
Identity = 40/97 (41.24%), Postives = 61/97 (62.89%), Query Frame = 2
Query:    2 FLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKY-----ESTARSW 277
            F + + F  +YP KPP V F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A +++  K++Y     E+  +SW
Sbjct:   53 FRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFQDHKSQYVKRVKETVEKSW 149          
The following BLAST results are available for this feature:
BLAST of CX288674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
UBC2_CANGA1.071e-1843.30Ubiquitin-conjugating enzyme E2 2 OS=Candida glabr... [more]
UBC2_DICDI1.399e-1844.90Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium... [more]
UBC1_CAEEL1.399e-1846.51Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UBC2_YEAST3.117e-1842.27Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces... [more]
UBC2_TRIHA3.117e-1843.30Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma h... [more]
UBC2_ASHGO3.117e-1842.27Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossyp... [more]
UBC84_DROME4.071e-1836.73Ubiquitin-conjugating enzyme E2-18 kDa OS=Drosophi... [more]
UBC2_DEBHA6.943e-1841.41Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces ... [more]
UBC2_USTMA9.068e-1845.88Ubiquitin-conjugating enzyme E2 2 OS=Ustilago mayd... [more]
UBC2_KLULA9.068e-1841.24Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces... [more]

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Properties
Property NameValue
Genbank descriptionC02003B02SK IF1 Citrus clementina cDNA clone C02003B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288674 ID=CX288674; Name=CX288674; organism=Citrus clementina; type=EST; length=438bp
ATTTCTAGTTTCAATCCATTTCCCTCCTGATTATCCATTCAAACCACCTA
AGGTCGCGTTTAGGACCAAGGTTTTTCACCCAAATATTAACAGCAATGGC
AGTATATGTCTCGACATACTAAAAGAGCAGTGGAGTCCTGCCCTCACTAT
ATCTAAGGTATTGCTCTCAATTTGTTCATTGTTGACGGACCCAAACCCAG
ATGACCCTTTGGTGCCAGAAATAGCTCACATGTACAAGACAGACAAGGCT
AAGTATGAATCAACTGCTAGGAGCTGGACCCAAAAGTATGCCATGGGCTA
AGTATGAAATCATCTAGGACATAGTCTTTCATCACATAATATTTATGTAT
AAAATGAAGTGTGATATGCTCGTCTTCCGTCTTTGTTTTTGCCTTTTGGA
AATGATAATTGAAGATGGTGTTCATGCACTGTCTTCCA
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