CX288696

Overview
NameCX288696
Unique NameCX288696
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length612
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288696 vs. ExPASy Swiss-Prot
Match: SAHH_SYNPW (Adenosylhomocysteinase OS=Synechococcus sp. (strain WH7803) GN=ahcY PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.104e-42
Identity = 92/161 (57.14%), Postives = 112/161 (69.57%), Query Frame = 2
Query:    8 TRNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 490
            T N  +I  +H+ KMK+ AIVCNIGHFDNEID+  L+ Y       IKPQ D    P  N  II+LAEGRL+NLGCATGHPSFVMS SFTNQV+AQ+EL+ + +  +Y K+VYVLPKHLDE V            T L+K+QADYI+V  +GP+KP HYRY
Sbjct:  322 TGNYQVIRNEHLLKMKDEAIVCNIGHFDNEIDVASLKDYEWEN---IKPQVDHITLPSGNR-IILLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELFTKGN--EYGKEVYVLPKHLDEMVARLHLDRIGAKLTELSKDQADYINVPVEGPFKPDHYRY 476          
BLAST of CX288696 vs. ExPASy Swiss-Prot
Match: SAHH_STRAA (Adenosylhomocysteinase OS=Streptomyces argillaceus GN=ahcY PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.104e-42
Identity = 93/161 (57.76%), Postives = 105/161 (65.22%), Query Frame = 2
Query:    8 TRNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 490
            T NKDIIM   M +MK+ AIV NIGHFDNEIDM GL   PG+ +  IKPQ   W FP+    IIVL+EGRL+NLG ATGHPSFVMS SF +Q +AQ+EL+ +   G Y   VY LPKHLDEKV            T L  EQA YI V  DGPYK  HYRY
Sbjct:  325 TGNKDIIMAADMARMKHQAIVGNIGHFDNEIDMAGLAKVPGIVKDEIKPQVHTWTFPD-GKKIIVLSEGRLLNLGNATGHPSFVMSNSFADQTLAQIELFTK--PGDYPTGVYTLPKHLDEKVARLHLDALGVKLTTLRPEQASYIGVDVDGPYKSDHYRY 482          
BLAST of CX288696 vs. ExPASy Swiss-Prot
Match: SAHH_RHOPA (Adenosylhomocysteinase OS=Rhodopseudomonas palustris GN=ahcY PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.104e-42
Identity = 92/161 (57.14%), Postives = 112/161 (69.57%), Query Frame = 2
Query:    8 TRNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 490
            T NKDII ++HM+ MK+ AIVCNIGHFDNEI +  L+    +K   IKPQ D   FP+    +I+L+EGRL+NLG A GHPSFVMS SFTNQ +AQ+EL++ +  GKYEKKVYVLPK LDEKV            T L K+QADYI V  +GP+K  HYRY
Sbjct:  315 TGNKDIITIEHMRAMKDRAIVCNIGHFDNEIQVATLKN---MKWDNIKPQVDEITFPD-GKRMILLSEGRLVNLGNAMGHPSFVMSASFTNQTLAQIELFQNQ--GKYEKKVYVLPKTLDEKVARLHLAKIGVKLTELRKDQADYIGVKVEGPFKADHYRY 469          
BLAST of CX288696 vs. ExPASy Swiss-Prot
Match: SAHH_FLAJ1 (Adenosylhomocysteinase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=ahcY PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.104e-42
Identity = 86/161 (53.42%), Postives = 109/161 (67.70%), Query Frame = 2
Query:    8 TRNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 490
            T NKDI++ +H ++MK+  +VCNIGHFDNEIDM  L    G  +I IKPQ D++        II+LAEGRL+NLGCATGHPSFVMS SFTNQ +AQ+ELW   ++  Y+ +VY+LPKHLDEKV              L ++QA YI V   GP+KP +YRY
Sbjct:  282 TGNKDIVLGEHFEQMKDKTVVCNIGHFDNEIDMAWLNKNHGASKIEIKPQVDKYNI--NGKDIIILAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELW--NNSAAYKNEVYMLPKHLDEKVAALHLAKLGVELEVLREDQAAYIGVEVQGPFKPEYYRY 438          
BLAST of CX288696 vs. ExPASy Swiss-Prot
Match: SAHH_STRCO (Adenosylhomocysteinase OS=Streptomyces coelicolor GN=ahcY PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.441e-42
Identity = 91/161 (56.52%), Postives = 107/161 (66.46%), Query Frame = 2
Query:    8 TRNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 490
            T NKDIIM   M KMK+ AIV NIGHFDNEIDM GL   PG+ +  +KPQ   W +P+    +IVL+EGRL+NLG ATGHPSFVMS SF +Q +AQ+EL+ +    +Y   VYVLPKHLDEKV            T L  EQADYI V  +GPYK  HYRY
Sbjct:  328 TGNKDIIMAKDMAKMKHQAIVGNIGHFDNEIDMAGLAQTPGIVKDEVKPQVHTWTYPD-GKVLIVLSEGRLLNLGNATGHPSFVMSNSFADQTLAQIELFTKPD--EYPTDVYVLPKHLDEKVARLHLDSLGVKLTTLRPEQADYIGVKVEGPYKADHYRY 485          
BLAST of CX288696 vs. ExPASy Swiss-Prot
Match: SAHH_PLACH (Adenosylhomocysteinase OS=Plasmodium chabaudi GN=PC000295.02.0 PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.882e-42
Identity = 88/162 (54.32%), Postives = 111/162 (68.52%), Query Frame = 2
Query:    8 TRNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEK-KVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 490
            T N DII ++H+ KMKNNA+V NIGHFD+EI +  L ++ G++   +KPQ DR   P  N  IIVLA+GRL+NL CATGHP+FVMS SF NQV AQLELW+ ++TGKYEK K Y+LPK LDEKV            T L   Q +++ VS +GP+K   YRY
Sbjct:  319 TGNVDIIKLEHLLKMKNNAVVGNIGHFDDEIQIADLFSHEGIEIENVKPQVDRVTLPNGNK-IIVLAQGRLLNLACATGHPAFVMSFSFCNQVFAQLELWENRNTGKYEKNKSYILPKELDEKVAYYHLKKLNATLTELDDNQCEFLGVSKNGPFKSEAYRY 479          
BLAST of CX288696 vs. ExPASy Swiss-Prot
Match: SAHH_METPB (Adenosylhomocysteinase OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=ahcY PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.882e-42
Identity = 91/161 (56.52%), Postives = 113/161 (70.19%), Query Frame = 2
Query:    8 TRNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 490
            T NKDII ++HM+ MK+ AIVCNIGHFDNEI + GL+    +K   IKPQ D   F + +  II+L+EGRL+NLG ATGHPSFVMS SFTNQ +AQ+ELW   + GKYE++VY LPK LDEKV            ++L  +QA YI VS +GP+KP HYRY
Sbjct:  314 TGNKDIITIEHMRAMKDRAIVCNIGHFDNEIQVAGLKN---LKWQNIKPQVDEIEFADGHR-IILLSEGRLVNLGNATGHPSFVMSASFTNQTLAQIELW--TNPGKYERQVYTLPKTLDEKVAALHLEKIGVKLSKLRPDQAAYIGVSQNGPFKPEHYRY 468          
BLAST of CX288696 vs. ExPASy Swiss-Prot
Match: SAHH_SPHAL (Adenosylhomocysteinase OS=Sphingopyxis alaskensis GN=ahcY PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.458e-42
Identity = 89/161 (55.28%), Postives = 108/161 (67.08%), Query Frame = 2
Query:    8 TRNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 490
            T N D+I  +HM  MKN AIVCNIGHFD+EI +  L  Y   K   +KPQ D   FP+    II+L++GRL+NLG ATGHPSFVMS SFTNQ +AQ+ELW      +Y+  VYVLPKHLDEKV            T+LT++QADYI V  +GP+KP HYRY
Sbjct:  318 TGNADVITAEHMAAMKNMAIVCNIGHFDSEIQIAALANY---KWTEVKPQVDLVEFPDGKQ-IIILSKGRLVNLGNATGHPSFVMSASFTNQTLAQIELWTRSE--QYQNDVYVLPKHLDEKVAALHLEKLGVKLTKLTQKQADYIGVPVEGPFKPDHYRY 472          
BLAST of CX288696 vs. ExPASy Swiss-Prot
Match: SAHH_COREF (Adenosylhomocysteinase OS=Corynebacterium efficiens GN=ahcY PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.458e-42
Identity = 94/161 (58.39%), Postives = 111/161 (68.94%), Query Frame = 2
Query:    8 TRNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 490
            T NKDII  + M KMK++A++ NIGHFDNEIDM  L     V R TIKPQ D + FP   S IIVL+EGRL+NLG ATGHPSFVMS SF +Q IAQ+EL++ +  G+YE +VY LPK LDEKV            T LTKEQA+YI V   GP+KP HYRY
Sbjct:  321 TGNKDIISYEQMLKMKDHALLGNIGHFDNEIDMHSLLHRDDVIRTTIKPQVDEFTFPNGKS-IIVLSEGRLLNLGNATGHPSFVMSTSFADQTIAQIELFQNE--GQYENQVYRLPKILDEKVARIHVEALGGKLTELTKEQAEYIGVDVAGPFKPEHYRY 478          
BLAST of CX288696 vs. ExPASy Swiss-Prot
Match: SAHH_BURPP (Adenosylhomocysteinase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=ahcY PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.458e-42
Identity = 91/161 (56.52%), Postives = 110/161 (68.32%), Query Frame = 2
Query:    8 TRNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 490
            T N  +I  DHMK M++NAIVCNIGHFD+EID+     Y   +   IKPQ D  +FP+    +I+LAEGRL+NLGCATGHPSFVMS SFTNQ +AQ+EL+ +    KYE KVYVLPKHLDEKV            T L+ +QA YI V  +GP+KP HYRY
Sbjct:  319 TGNYHVIGHDHMKAMRHNAIVCNIGHFDSEIDVASTRQY---QWDNIKPQVDHIIFPD-GKRVILLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELFTQGE--KYENKVYVLPKHLDEKVARLHLARIGANLTVLSDDQAGYIGVDKNGPFKPNHYRY 473          
The following BLAST results are available for this feature:
BLAST of CX288696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
SAHH_SYNPW1.104e-4257.14Adenosylhomocysteinase OS=Synechococcus sp. (strai... [more]
SAHH_STRAA1.104e-4257.76Adenosylhomocysteinase OS=Streptomyces argillaceus... [more]
SAHH_RHOPA1.104e-4257.14Adenosylhomocysteinase OS=Rhodopseudomonas palustr... [more]
SAHH_FLAJ11.104e-4253.42Adenosylhomocysteinase OS=Flavobacterium johnsonia... [more]
SAHH_STRCO1.441e-4256.52Adenosylhomocysteinase OS=Streptomyces coelicolor ... [more]
SAHH_PLACH1.882e-4254.32Adenosylhomocysteinase OS=Plasmodium chabaudi GN=P... [more]
SAHH_METPB1.882e-4256.52Adenosylhomocysteinase OS=Methylobacterium populi ... [more]
SAHH_SPHAL2.458e-4255.28Adenosylhomocysteinase OS=Sphingopyxis alaskensis ... [more]
SAHH_COREF2.458e-4258.39Adenosylhomocysteinase OS=Corynebacterium efficien... [more]
SAHH_BURPP2.458e-4256.52Adenosylhomocysteinase OS=Burkholderia phytofirman... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02003D02SK IF1 Citrus clementina cDNA clone C02003D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288696 ID=CX288696; Name=CX288696; organism=Citrus clementina; type=EST; length=612bp
ATTCGGCACGAGGAACAAGGACATCATCATGGTTGACCACATGAAGAAGA
TGAAGAACAATGCAATTGTTTGCAACATTGGTCACTTTGATAATGAAATT
GATATGCTCGGTCTTGAGACCTACCCGGGTGTTAAGCGCATTACCATCAA
GCCCCAAACTGATAGGTGGGTCTTCCCGGAGACCAACTCAGGCATCATCG
TGTTGGCTGAGGGACGTCTCATGAACTTGGGATGTGCCACTGGACACCCC
AGCTTTGTGATGTCCTGCTCCTTCACCAACCAGGTGATTGCCCAGCTTGA
GCTCTGGAAGGAGAAGAGCACCGGCAAGTACGAGAAGAAGGTGTACGTTC
TGCCCAAGCACCTCGATGAAAAGGTTGCTGCTCTTCACCTTGGCAAACTT
GGAGCTAAGCTCACCAGGCTCACCAAGGAGCAGGCTGACTACATCAGTGT
GTCCGCCGATGGTCCTTACAAGCCTCTTCACTACAGGTACTAAGTGGAAG
AAGAAGAAGAAGAAGAAGAAGAGTGAATGTTTTGAGGGAAAGAAACAAAA
TATTTGGCCGGCTTGATTGTTTTCAATGATGATCTGTAGTAGGATGTTAG
GTTTAAATTTCG
back to top