CX288696

Overview
NameCX288696
Unique NameCX288696
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length612
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX288696_ssr497 microsatellite CX288696_ssr497:497..520. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX288696 vs. ExPASy Swiss-Prot
Match: SAHH_MYCBT (Adenosylhomocysteinase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=ahcY PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 2.712e-49
Identity = 97/161 (60.25%), Postives = 117/161 (72.67%), Query Frame = 2 
Query:    8 TRNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 490
            T NKDIIM++H+K MK++AI+ NIGHFDNEIDM GLE   G  R+ +KPQ D W F +T   IIVL+EGRL+NLG ATGHPSFVMS SF NQ IAQ+ELW +    +Y+ +VY LPKHLDEKV            T+LTKEQA+Y+ V  +GPYKP HYRY
Sbjct:  338 TGNKDIIMLEHIKAMKDHAILGNIGHFDNEIDMAGLER-SGATRVNVKPQVDLWTFGDTGRSIIVLSEGRLLNLGNATGHPSFVMSNSFANQTIAQIELWTKND--EYDNEVYRLPKHLDEKVARIHVEALGGHLTKLTKEQAEYLGVDVEGPYKPDHYRY 495
[Close]
BLAST of CX288696 vs. ExPASy Swiss-Prot
Match: SAHH_MYCBP (Adenosylhomocysteinase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=ahcY PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 2.712e-49
Identity = 97/161 (60.25%), Postives = 117/161 (72.67%), Query Frame = 2 
Query:    8 TRNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 490
            T NKDIIM++H+K MK++AI+ NIGHFDNEIDM GLE   G  R+ +KPQ D W F +T   IIVL+EGRL+NLG ATGHPSFVMS SF NQ IAQ+ELW +    +Y+ +VY LPKHLDEKV            T+LTKEQA+Y+ V  +GPYKP HYRY
Sbjct:  338 TGNKDIIMLEHIKAMKDHAILGNIGHFDNEIDMAGLER-SGATRVNVKPQVDLWTFGDTGRSIIVLSEGRLLNLGNATGHPSFVMSNSFANQTIAQIELWTKND--EYDNEVYRLPKHLDEKVARIHVEALGGHLTKLTKEQAEYLGVDVEGPYKPDHYRY 495
[Close]
BLAST of CX288696 vs. ExPASy Swiss-Prot
Match: SAHH_MYCBO (Adenosylhomocysteinase OS=Mycobacterium bovis GN=ahcY PE=1 SV=3)

HSP 1 Score: 194.897 bits (494), Expect = 2.712e-49
Identity = 97/161 (60.25%), Postives = 117/161 (72.67%), Query Frame = 2 
Query:    8 TRNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 490
            T NKDIIM++H+K MK++AI+ NIGHFDNEIDM GLE   G  R+ +KPQ D W F +T   IIVL+EGRL+NLG ATGHPSFVMS SF NQ IAQ+ELW +    +Y+ +VY LPKHLDEKV            T+LTKEQA+Y+ V  +GPYKP HYRY
Sbjct:  338 TGNKDIIMLEHIKAMKDHAILGNIGHFDNEIDMAGLER-SGATRVNVKPQVDLWTFGDTGRSIIVLSEGRLLNLGNATGHPSFVMSNSFANQTIAQIELWTKND--EYDNEVYRLPKHLDEKVARIHVEALGGHLTKLTKEQAEYLGVDVEGPYKPDHYRY 495
[Close]
BLAST of CX288696 vs. ExPASy Swiss-Prot
Match: SAHH_XANCP (Adenosylhomocysteinase OS=Xanthomonas campestris pv. campestris GN=ahcY PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 4.626e-49
Identity = 95/161 (59.01%), Postives = 119/161 (73.91%), Query Frame = 2 
Query:    8 TRNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 490
            T NKDII V+H++ MK+ AIVCNIGHFDNEI +  L    GV++I IKPQ D++VF   N+ I +LA+GRL+NLGCATGHPSFVMS SF NQ +AQ++LW+++ +  YEKKVY+LPKHLDE+V            T LTK+QADY+ V   GPYKP HYRY
Sbjct:  323 TGNKDIITVEHLQAMKDQAIVCNIGHFDNEIQVDALNALKGVEKINIKPQVDKYVFGNGNA-IFLLADGRLVNLGCATGHPSFVMSNSFANQTLAQIDLWEKRDS--YEKKVYILPKHLDEEVARLHLEKIGVKLTTLTKDQADYLGVDVAGPYKPDHYRY 480
[Close]
BLAST of CX288696 vs. ExPASy Swiss-Prot
Match: SAHH_XANC8 (Adenosylhomocysteinase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=ahcY PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 4.626e-49
Identity = 95/161 (59.01%), Postives = 119/161 (73.91%), Query Frame = 2 
Query:    8 TRNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 490
            T NKDII V+H++ MK+ AIVCNIGHFDNEI +  L    GV++I IKPQ D++VF   N+ I +LA+GRL+NLGCATGHPSFVMS SF NQ +AQ++LW+++ +  YEKKVY+LPKHLDE+V            T LTK+QADY+ V   GPYKP HYRY
Sbjct:  323 TGNKDIITVEHLQAMKDQAIVCNIGHFDNEIQVDALNALKGVEKINIKPQVDKYVFGNGNA-IFLLADGRLVNLGCATGHPSFVMSNSFANQTLAQIDLWEKRDS--YEKKVYILPKHLDEEVARLHLEKIGVKLTTLTKDQADYLGVDVAGPYKPDHYRY 480
[Close]
BLAST of CX288696 vs. ExPASy Swiss-Prot
Match: SAHH_CHLP8 (Adenosylhomocysteinase OS=Chlorobaculum parvum (strain NCIB 8327) GN=ahcY PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 7.890e-49
Identity = 98/161 (60.87%), Postives = 114/161 (70.81%), Query Frame = 2 
Query:    8 TRNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 490
            T NKD+I ++HMKKMK+ AIVCNIGHFDNEI +  L  + G  RI IKPQ D++VF E    I +LAEGRL+NLGCATGHPSFVMS SFTNQ +AQ+ELWK      Y+  VY LPKHLDE+V            T L+KEQADYI V  +GPYKP HYRY
Sbjct:  316 TGNKDVITLEHMKKMKDEAIVCNIGHFDNEIQVDALNNFKGATRINIKPQVDKYVF-EDGRCIYLLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELWK----NNYDVDVYRLPKHLDEEVARLHLGQIGVKLTTLSKEQADYIGVPVEGPYKPEHYRY 471
[Close]
BLAST of CX288696 vs. ExPASy Swiss-Prot
Match: SAHH_BACTN (Adenosylhomocysteinase OS=Bacteroides thetaiotaomicron GN=ahcY PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.758e-48
Identity = 98/161 (60.87%), Postives = 118/161 (73.29%), Query Frame = 2 
Query:    8 TRNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 490
            T N DII +DHM+KMK+ AIVCNIGHFDNEI +  L+ Y G+K + IKPQ DR+ FP+ +S I++LA+GRL+NLGCATGHPSFVMS SFTNQ +AQ+EL+ +    KYE  VY LPKHLDE+V            T+LT EQA YI VS DGPYK  HYRY
Sbjct:  321 TGNIDIIRIDHMEKMKDQAIVCNIGHFDNEIQVDALKHYSGIKCVNIKPQVDRYYFPDGHS-ILLLADGRLVNLGCATGHPSFVMSNSFTNQTLAQIELFNK----KYEVNVYRLPKHLDEEVARLHLEKIGVKLTKLTPEQAAYIGVSVDGPYKAEHYRY 476
[Close]
BLAST of CX288696 vs. ExPASy Swiss-Prot
Match: SAHH_MYCUA (Adenosylhomocysteinase OS=Mycobacterium ulcerans (strain Agy99) GN=ahcY PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 2.998e-48
Identity = 96/161 (59.63%), Postives = 116/161 (72.05%), Query Frame = 2 
Query:    8 TRNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 490
            T NKDIIM++H+K MK+++I+ NIGHFDNEIDM GLE   G  R  IKPQ D W F +T   IIVL+EGRL+NLG ATGHPSFVMS SF NQ IAQ+ELW +    +Y+ +VY LPKHLDEKV            T+LTK+QA+Y+ V  +GPYKP HYRY
Sbjct:  335 TGNKDIIMLEHIKAMKDHSILGNIGHFDNEIDMAGLER-SGATRTNIKPQVDLWTFGDTGRSIIVLSEGRLLNLGNATGHPSFVMSNSFANQTIAQIELWTKND--EYDNEVYRLPKHLDEKVARIHVEALGGRLTKLTKDQAEYLGVDVEGPYKPDHYRY 492
[Close]
BLAST of CX288696 vs. ExPASy Swiss-Prot
Match: SAHH_MYCMM (Adenosylhomocysteinase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=ahcY PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 2.998e-48
Identity = 96/161 (59.63%), Postives = 116/161 (72.05%), Query Frame = 2 
Query:    8 TRNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 490
            T NKDIIM++H+K MK+++I+ NIGHFDNEIDM GLE   G  R  IKPQ D W F +T   IIVL+EGRL+NLG ATGHPSFVMS SF NQ IAQ+ELW +    +Y+ +VY LPKHLDEKV            T+LTK+QA+Y+ V  +GPYKP HYRY
Sbjct:  335 TGNKDIIMLEHIKAMKDHSILGNIGHFDNEIDMAGLER-SGATRTNIKPQVDLWTFGDTGRSIIVLSEGRLLNLGNATGHPSFVMSNSFANQTIAQIELWTKND--EYDNEVYRLPKHLDEKVARIHVEALGGRLTKLTKDQAEYLGVDVEGPYKPDHYRY 492
[Close]
BLAST of CX288696 vs. ExPASy Swiss-Prot
Match: SAHH_MYCLE (Adenosylhomocysteinase OS=Mycobacterium leprae GN=ahcY PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 8.724e-48
Identity = 95/161 (59.01%), Postives = 115/161 (71.43%), Query Frame = 2 
Query:    8 TRNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 490
            T NKDII+++HMK MK++AI+ NIGHFDNEIDM  LE   G  R+ IKPQ D W F ++   IIVL+EGRL+NLG ATGHPSFVMS SF NQ IAQ+ELW +     Y+ +VY LPKHLDEKV            T+LTK+QA+Y+ V  DGP+KP HYRY
Sbjct:  335 TGNKDIILLEHMKAMKDHAILGNIGHFDNEIDMAALER-SGATRLNIKPQVDLWTFGDSGKSIIVLSEGRLLNLGNATGHPSFVMSNSFANQTIAQIELWTKND--DYDNEVYRLPKHLDEKVARVHVEALGGQLTKLTKDQAEYLGVDVDGPFKPDHYRY 492
The following BLAST results are available for this feature:
BLAST of CX288696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
SAHH_MYCBT2.712e-4960.25Adenosylhomocysteinase OS=Mycobacterium bovis (str... [more]
SAHH_MYCBP2.712e-4960.25Adenosylhomocysteinase OS=Mycobacterium bovis (str... [more]
SAHH_MYCBO2.712e-4960.25Adenosylhomocysteinase OS=Mycobacterium bovis GN=a... [more]
SAHH_XANCP4.626e-4959.01Adenosylhomocysteinase OS=Xanthomonas campestris p... [more]
SAHH_XANC84.626e-4959.01Adenosylhomocysteinase OS=Xanthomonas campestris p... [more]
SAHH_CHLP87.890e-4960.87Adenosylhomocysteinase OS=Chlorobaculum parvum (st... [more]
SAHH_BACTN1.758e-4860.87Adenosylhomocysteinase OS=Bacteroides thetaiotaomi... [more]
SAHH_MYCUA2.998e-4859.63Adenosylhomocysteinase OS=Mycobacterium ulcerans (... [more]
SAHH_MYCMM2.998e-4859.63Adenosylhomocysteinase OS=Mycobacterium marinum (s... [more]
SAHH_MYCLE8.724e-4859.01Adenosylhomocysteinase OS=Mycobacterium leprae GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC02003D02SK IF1 Citrus clementina cDNA clone C02003D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288696 ID=CX288696; Name=CX288696; organism=Citrus clementina; type=EST; length=612bp
ATTCGGCACGAGGAACAAGGACATCATCATGGTTGACCACATGAAGAAGA
TGAAGAACAATGCAATTGTTTGCAACATTGGTCACTTTGATAATGAAATT
GATATGCTCGGTCTTGAGACCTACCCGGGTGTTAAGCGCATTACCATCAA
GCCCCAAACTGATAGGTGGGTCTTCCCGGAGACCAACTCAGGCATCATCG
TGTTGGCTGAGGGACGTCTCATGAACTTGGGATGTGCCACTGGACACCCC
AGCTTTGTGATGTCCTGCTCCTTCACCAACCAGGTGATTGCCCAGCTTGA
GCTCTGGAAGGAGAAGAGCACCGGCAAGTACGAGAAGAAGGTGTACGTTC
TGCCCAAGCACCTCGATGAAAAGGTTGCTGCTCTTCACCTTGGCAAACTT
GGAGCTAAGCTCACCAGGCTCACCAAGGAGCAGGCTGACTACATCAGTGT
GTCCGCCGATGGTCCTTACAAGCCTCTTCACTACAGGTACTAAGTGGAAG
AAGAAGAAGAAGAAGAAGAAGAGTGAATGTTTTGAGGGAAAGAAACAAAA
TATTTGGCCGGCTTGATTGTTTTCAATGATGATCTGTAGTAGGATGTTAG
GTTTAAATTTCG
back to top