CX288696

Overview
NameCX288696
Unique NameCX288696
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length612
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX288696_ssr497 microsatellite CX288696_ssr497:497..520. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX288696 vs. ExPASy Swiss-Prot
Match: SAHH_PROMP (Adenosylhomocysteinase OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=ahcY PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.179e-44
Identity = 95/161 (59.01%), Postives = 114/161 (70.81%), Query Frame = 2
Query:    8 TRNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 490
            T N  +I  D++ KMK+ AIVCNIGHFDNEID+  L+ YP      IKPQ D    P  N  II+LAEGRL+NLGCATGHPSFVMS SFTNQV+AQ+EL+ +  + +Y K+VYVLPKHLDE V            T+LTK+QADYI+VS +GPYKP  YRY
Sbjct:  318 TGNYQVITNDNLIKMKDEAIVCNIGHFDNEIDVASLKDYPWEN---IKPQVDHITLPSGNK-IILLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELFNK--SDEYSKEVYVLPKHLDEMVARLHLDKIGAKLTKLTKDQADYINVSVEGPYKPEQYRY 472          
BLAST of CX288696 vs. ExPASy Swiss-Prot
Match: SAHH_PELLD (Adenosylhomocysteinase OS=Pelodictyon luteolum (strain DSM 273) GN=ahcY PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.540e-44
Identity = 91/161 (56.52%), Postives = 110/161 (68.32%), Query Frame = 2
Query:    8 TRNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 490
            T NKD++ ++HMK+M + AIVCNIGHFDNEI +  L  Y G  ++ IKPQ D++ F E    I +LAEGRL+NLGCATGHPSFVMS SFTNQ +AQ+ELWK      Y+  VY LPK LDE+V            T L+KEQA+YI V   GPYKP HYRY
Sbjct:  316 TGNKDVVTLEHMKQMPDEAIVCNIGHFDNEIQVEPLNEYKGATKLNIKPQVDKYTF-EDGHCIYLLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELWK----NDYKVDVYRLPKALDEEVARLHLEQIGVKLTTLSKEQAEYIGVPVTGPYKPEHYRY 471          
BLAST of CX288696 vs. ExPASy Swiss-Prot
Match: SAHH_CUPTR (Adenosylhomocysteinase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=ahcY PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.011e-44
Identity = 91/161 (56.52%), Postives = 109/161 (67.70%), Query Frame = 2
Query:    8 TRNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 490
            T N  +I  +HM KMK+ AIVCNIGHFDNEID+  +E Y   +   IKPQ D   FP+    +I+LA+GRL+NLGCATGHPS+VMS SF NQ IAQ+ELW+E+ +GKY   VY LPKHLDEKV            T LT +QA YI V  +GPYK  HYRY
Sbjct:  316 TGNYHVITHEHMAKMKDQAIVCNIGHFDNEIDIASIEKYEWDE---IKPQVDHVKFPDGKK-LIILAKGRLVNLGCATGHPSYVMSSSFANQTIAQIELWQERDSGKYPVGVYTLPKHLDEKVARLQLRKLNAQLTELTDQQAAYIGVKKEGPYKADHYRY 472          
BLAST of CX288696 vs. ExPASy Swiss-Prot
Match: SAHH_BRAJA (Adenosylhomocysteinase OS=Bradyrhizobium japonicum GN=ahcY PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.011e-44
Identity = 93/161 (57.76%), Postives = 111/161 (68.94%), Query Frame = 2
Query:    8 TRNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 490
            T NKDII ++HM+ MK+ AIVCNIGHFDNEI + GL     +K   IKPQ D   FP+ +  II+L+EGRL+NLG A GHPSFVMS SFTNQ +AQ+EL+     GKY+K+VYVLPK LDEKV            T L K+QADYI V  +GPYK  HYRY
Sbjct:  317 TGNKDIITIEHMRAMKDRAIVCNIGHFDNEIQIAGLRN---LKWTNIKPQVDEIEFPDKHR-IIMLSEGRLVNLGNAMGHPSFVMSASFTNQTLAQIELFANNKDGKYKKEVYVLPKTLDEKVARLHLAKIGVKLTELRKDQADYIGVKQEGPYKSDHYRY 473          
BLAST of CX288696 vs. ExPASy Swiss-Prot
Match: SAHH_PELCD (Adenosylhomocysteinase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=ahcY PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.627e-44
Identity = 92/161 (57.14%), Postives = 112/161 (69.57%), Query Frame = 2
Query:    8 TRNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 490
            T N D+I   HM  MKN AIVCNIGHFD+EI +  L   P +    +KPQ D+  +P+    I VLA+GRL+NLGCATGHPSFVMS SFTNQV+AQ+ELW+  ++ +YE KVYVLPK LDEKV            TR+T++QADY+ V  DGPYKP HYRY
Sbjct:  318 TGNVDVITRSHMDVMKNEAIVCNIGHFDSEIQVDALYDDPSLTVHEVKPQVDQIEWPD-GKRITVLAKGRLVNLGCATGHPSFVMSNSFTNQVLAQIELWQ--NSDRYENKVYVLPKQLDEKVARLHLANLGVKLTRMTEKQADYLGVPVDGPYKPEHYRY 475          
BLAST of CX288696 vs. ExPASy Swiss-Prot
Match: SAHH_COXB1 (Adenosylhomocysteinase OS=Coxiella burnetii (strain CbuK_Q154) GN=ahcY PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.430e-44
Identity = 93/161 (57.76%), Postives = 114/161 (70.81%), Query Frame = 2
Query:    8 TRNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 490
            T N DII  +HM KMK+ AIVCNIGHFDNEID+  L+ Y   + + IKPQ D+ +FP+    ++VLA+GRL+NLGCATGHPSFVMS SFTNQV+AQ+ELW+     KY   VYVLPKHLDE+V            T LT++QADYI V  +GP+K  HYRY
Sbjct:  284 TGNTDIITHEHMLKMKDQAIVCNIGHFDNEIDIASLQDY---QWMNIKPQVDQVIFPD-GKRLMVLAQGRLVNLGCATGHPSFVMSNSFTNQVLAQIELWQYPE--KYPIGVYVLPKHLDEEVARLHLERVGAKLTTLTEKQADYIGVDPEGPFKSEHYRY 438          
BLAST of CX288696 vs. ExPASy Swiss-Prot
Match: SAHH_RALPJ (Adenosylhomocysteinase OS=Ralstonia pickettii (strain 12J) GN=ahcY PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 4.480e-44
Identity = 94/163 (57.67%), Postives = 109/163 (66.87%), Query Frame = 2
Query:    8 TRNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKE--KSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 490
            T N  +I  DHM KMK+ AIVCNIGHFDNEID+  +E Y   +   IKPQ D  +FP+    II+LA+GRL+NLGCATGHPS+VMS SF NQ IAQ+ELW E  K + KY   VY LPKHLDEKV            T LT +QA YI VS +GPYK  HYRY
Sbjct:  316 TGNYHVITHDHMAKMKDQAIVCNIGHFDNEIDIASVEKYQWEE---IKPQVDHVIFPDGKK-IIILAKGRLVNLGCATGHPSYVMSSSFANQTIAQIELWTEAVKGSNKYPVGVYTLPKHLDEKVARLQLKKLNAQLTELTDQQAAYIGVSKEGPYKADHYRY 474          
BLAST of CX288696 vs. ExPASy Swiss-Prot
Match: SAHH_PROM2 (Adenosylhomocysteinase OS=Prochlorococcus marinus (strain MIT 9215) GN=ahcY PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 4.480e-44
Identity = 95/161 (59.01%), Postives = 112/161 (69.57%), Query Frame = 2
Query:    8 TRNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 490
            T N  +I  +++ KMKN AIVCNIGHFDNEID+  L+ YP      IKPQ D    P  N  II+LAEGRL+NLGCATGHPSFVMS SFTNQV+AQ+EL+ +    +Y K+VYVLPKHLDE V            T+LTKEQADYI+VS +GPYK   YRY
Sbjct:  318 TGNYQVITKENLVKMKNEAIVCNIGHFDNEIDVASLKNYPWEN---IKPQVDHITLPSGNK-IILLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELFNKSE--QYAKEVYVLPKHLDEMVARLHLDKIGAKLTKLTKEQADYINVSVEGPYKSELYRY 472          
BLAST of CX288696 vs. ExPASy Swiss-Prot
Match: SAHH_DESVV (Adenosylhomocysteinase OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=ahcY PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 5.851e-44
Identity = 94/161 (58.39%), Postives = 110/161 (68.32%), Query Frame = 2
Query:    8 TRNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 490
            T N ++I   HM+ MK+ AIVCNIGHFDNEIDM  LE   G   + IKPQ D+W      S IIVLAEGRL+NLGCATGHPSFVMS SFTNQ +AQ+EL    +    E+KVY LPK LDE+V            TRL+K+QADYI VS +GP+KP HYRY
Sbjct:  323 TGNCNVITGAHMEAMKDEAIVCNIGHFDNEIDMHYLENTEGCVCLNIKPQVDKWTLRSGRS-IIVLAEGRLVNLGCATGHPSFVMSASFTNQTLAQIEL---ATNPDLERKVYTLPKKLDEEVARLHLDRLGVKLTRLSKDQADYIGVSPEGPFKPDHYRY 479          
BLAST of CX288696 vs. ExPASy Swiss-Prot
Match: SAHH_DESVH (Adenosylhomocysteinase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=ahcY PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 5.851e-44
Identity = 94/161 (58.39%), Postives = 110/161 (68.32%), Query Frame = 2
Query:    8 TRNKDIIMVDHMKKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQTDRWVFPETNSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWKEKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXXTRLTKEQADYISVSADGPYKPLHYRY 490
            T N ++I   HM+ MK+ AIVCNIGHFDNEIDM  LE   G   + IKPQ D+W      S IIVLAEGRL+NLGCATGHPSFVMS SFTNQ +AQ+EL    +    E+KVY LPK LDE+V            TRL+K+QADYI VS +GP+KP HYRY
Sbjct:  323 TGNCNVITGAHMEAMKDEAIVCNIGHFDNEIDMHYLENTEGCVCLNIKPQVDKWTLRSGRS-IIVLAEGRLVNLGCATGHPSFVMSASFTNQTLAQIEL---ATNPDLERKVYTLPKKLDEEVARLHLDRLGVKLTRLSKDQADYIGVSPEGPFKPDHYRY 479          
The following BLAST results are available for this feature:
BLAST of CX288696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 241
Match NameE-valueIdentityDescription
SAHH_PROMP1.179e-4459.01Adenosylhomocysteinase OS=Prochlorococcus marinus ... [more]
SAHH_PELLD1.540e-4456.52Adenosylhomocysteinase OS=Pelodictyon luteolum (st... [more]
SAHH_CUPTR2.011e-4456.52Adenosylhomocysteinase OS=Cupriavidus taiwanensis ... [more]
SAHH_BRAJA2.011e-4457.76Adenosylhomocysteinase OS=Bradyrhizobium japonicum... [more]
SAHH_PELCD2.627e-4457.14Adenosylhomocysteinase OS=Pelobacter carbinolicus ... [more]
SAHH_COXB13.430e-4457.76Adenosylhomocysteinase OS=Coxiella burnetii (strai... [more]
SAHH_RALPJ4.480e-4457.67Adenosylhomocysteinase OS=Ralstonia pickettii (str... [more]
SAHH_PROM24.480e-4459.01Adenosylhomocysteinase OS=Prochlorococcus marinus ... [more]
SAHH_DESVV5.851e-4458.39Adenosylhomocysteinase OS=Desulfovibrio vulgaris s... [more]
SAHH_DESVH5.851e-4458.39Adenosylhomocysteinase OS=Desulfovibrio vulgaris (... [more]

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Properties
Property NameValue
Genbank descriptionC02003D02SK IF1 Citrus clementina cDNA clone C02003D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288696 ID=CX288696; Name=CX288696; organism=Citrus clementina; type=EST; length=612bp
ATTCGGCACGAGGAACAAGGACATCATCATGGTTGACCACATGAAGAAGA
TGAAGAACAATGCAATTGTTTGCAACATTGGTCACTTTGATAATGAAATT
GATATGCTCGGTCTTGAGACCTACCCGGGTGTTAAGCGCATTACCATCAA
GCCCCAAACTGATAGGTGGGTCTTCCCGGAGACCAACTCAGGCATCATCG
TGTTGGCTGAGGGACGTCTCATGAACTTGGGATGTGCCACTGGACACCCC
AGCTTTGTGATGTCCTGCTCCTTCACCAACCAGGTGATTGCCCAGCTTGA
GCTCTGGAAGGAGAAGAGCACCGGCAAGTACGAGAAGAAGGTGTACGTTC
TGCCCAAGCACCTCGATGAAAAGGTTGCTGCTCTTCACCTTGGCAAACTT
GGAGCTAAGCTCACCAGGCTCACCAAGGAGCAGGCTGACTACATCAGTGT
GTCCGCCGATGGTCCTTACAAGCCTCTTCACTACAGGTACTAAGTGGAAG
AAGAAGAAGAAGAAGAAGAAGAGTGAATGTTTTGAGGGAAAGAAACAAAA
TATTTGGCCGGCTTGATTGTTTTCAATGATGATCTGTAGTAGGATGTTAG
GTTTAAATTTCG
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