CX288699

Overview
NameCX288699
Unique NameCX288699
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length375
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288699 vs. ExPASy Swiss-Prot
Match: MED6_DEBHA (Mediator of RNA polymerase II transcription subunit 6 OS=Debaryomyces hansenii GN=MED6 PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.698e-15
Identity = 43/120 (35.83%), Postives = 74/120 (61.67%), Query Frame = 3
Query:   24 ICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLKMR--------SIHPLDI--SQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 353
            I +++  W+  + L    + DYF+ S FYDRT NN+ L+M+        +I+P     S+L +MTGIE++++   EP  ++IRKQ R  P++V     YY++  +IYQAP++ ++ S+R+
Sbjct:    9 IQWKNPEWIQQFGLFTGNVLDYFSESPFYDRTSNNQVLRMQFQFQQIPPNINPQKYLQSKLVEMTGIEFIIAASREPDFWIIRKQTRLSPKQVNIEQDYYIIGANIYQAPKVYDILSSRL 128          
BLAST of CX288699 vs. ExPASy Swiss-Prot
Match: MED6_KLULA (Mediator of RNA polymerase II transcription subunit 6 OS=Kluyveromyces lactis GN=MED6 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.782e-15
Identity = 44/145 (30.34%), Postives = 69/145 (47.59%), Query Frame = 3
Query:   45 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLKMRS------------------------------------------IHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 353
            W+ T+ L  + + DYF+ S F+D+T NN+ +KM+                                           +H +   +L KM GIEY+L  V EP L++IRKQ+RDGP K T +  YYV+  ++YQ+P +  +   R+
Sbjct:   16 WIQTFGLHTDNVLDYFSESPFFDKTSNNQVVKMQQQFSQQSQVPGSMPLGSSSGIGAAAGAGTVSPSDRSLIWERYPVHAMLEKELMKMKGIEYILVLVREPDLWIIRKQQRDGPTKTTTLRDYYVIGSAVYQSPTVYKIIQNRL 160          
BLAST of CX288699 vs. ExPASy Swiss-Prot
Match: MED6_USTMA (Mediator of RNA polymerase II transcription subunit 6 OS=Ustilago maydis GN=MED6 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.939e-15
Identity = 39/111 (35.14%), Postives = 64/111 (57.66%), Query Frame = 3
Query:   57 YPLDRNMIFDYFTLSLFYDRTCNNEQLKMRSIH------------PLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 353
            +PL  + +  YF  S F+DR  NNEQ++M++I               +  +L + TG+E++L    EP  FV++K+ R  P + TP+  YYV++ SIYQAP L ++ + R+
Sbjct:   53 HPLTEHNVMAYFATSPFFDRRSNNEQIRMQNIANGIQNLSGGMGAKQEEQELKRFTGLEFVLVHSREPTCFVVQKRWRTSPTETTPLAAYYVINDSIYQAPDLYSILATRL 163          
BLAST of CX288699 vs. ExPASy Swiss-Prot
Match: MED6_SCHPO (Mediator of RNA polymerase II transcription subunit 6 OS=Schizosaccharomyces pombe GN=med6 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.315e-14
Identity = 44/128 (34.38%), Postives = 71/128 (55.47%), Query Frame = 3
Query:    3 PGTDMTGICFRDQLWLNTYP-LDRNMIFDYFTLSLFYDRTCNNEQLKMRS-IHPLDI----SQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALH 368
            P  D+T I +R   W+ +   L    + +YF+ S FY    NNE LKM+S  + LD+    SQL ++TGI++++     P L+VI+KQ R    +V P+  Y+V + +IY AP    + + R+  A +
Sbjct:    7 PSVDLTSIQWRMPEWVQSMGGLRTENVLEYFSQSPFYSHKSNNEMLKMQSQFNALDLGDLNSQLKRLTGIQFVIIHERPPFLWVIQKQNRLNENEVKPLTVYFVCNENIYMAPNAYTLLATRMLNATY 134          
BLAST of CX288699 vs. ExPASy Swiss-Prot
Match: MED6_ENCCU (Mediator of RNA polymerase II transcription subunit 6 OS=Encephalitozoon cuniculi GN=MED6 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.030e-12
Identity = 47/117 (40.17%), Postives = 68/117 (58.12%), Query Frame = 3
Query:   24 ICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLKMRS-IHPLD-ISQLSKMTGIEYML-SEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 365
            I F DQ +L + PLD   + +YF+ S FYD++CNNE LKM++    LD  S+L  M GI Y + S   E  LFVIRK    G    T +  YY++ G +Y AP   +++  R+G ++
Sbjct:    8 ISFVDQRFLGSKPLDDTNVLEYFSGSPFYDKSCNNEILKMQTQFRGLDQKSKLFSMVGIFYEVESSNHEKTLFVIRKAYNHGDTAET-LGMYYIIHGHVYAAPTNYSIYRCRMGDSM 123          
BLAST of CX288699 vs. ExPASy Swiss-Prot
Match: MED6_ASHGO (Mediator of RNA polymerase II transcription subunit 6 OS=Ashbya gossypii GN=MED6 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.294e-12
Identity = 40/134 (29.85%), Postives = 68/134 (50.75%), Query Frame = 3
Query:   45 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLKMRS-------------------------------IHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 353
            W+ ++ L  + + DYF+ S F+D+T NN  +KM+                                 + L   +L+K+ GIEY+L+ V EP  +V+RKQ+R G ++VT +  YY++  ++YQAP   +V   R+
Sbjct:   16 WIQSFGLRTDNVLDYFSQSPFFDKTSNNHVVKMQQQFSQQMPPAPQTARPKAAPSAERQAIWDRYPAYALLEQELAKLKGIEYVLAHVREPDFWVVRKQRRAG-DRVTALNDYYIIGANVYQAPTAYSVVQNRL 148          
BLAST of CX288699 vs. ExPASy Swiss-Prot
Match: MED6_PICST (Mediator of RNA polymerase II transcription subunit 6 OS=Pichia stipitis GN=MED6 PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 2.996e-12
Identity = 34/104 (32.69%), Postives = 61/104 (58.65%), Query Frame = 3
Query:   78 IFDYFTLSLFYDRTCNNEQLKMR------------SIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 353
            + +YF+LS FYDRT NN+QL M+            +       +L +MTG+ ++++   EP  ++IRKQ +  P+    +  YY++  ++YQAP++ +V S+R+
Sbjct:   27 VLEYFSLSPFYDRTSNNQQLMMQFQFQQIQIPVNTTFQQFFQEKLREMTGVVFVIAYNREPDFWIIRKQLQLDPQNAVTLQDYYIIGANVYQAPKVYDVLSSRL 130          
BLAST of CX288699 vs. ExPASy Swiss-Prot
Match: MED6_CAEBR (Mediator of RNA polymerase II transcription subunit 6 OS=Caenorhabditis briggsae GN=mdt-6 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.139e-11
Identity = 38/115 (33.04%), Postives = 71/115 (61.74%), Query Frame = 3
Query:   30 FRDQLWLNTYPLDRNMIFDYFTL--SLFYDRTCNNEQLKMRSIHPLDISQ-LSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 365
            FR+  W   + ++R+ + DYF    ++FY+    N+Q+KM++I    + + L  M GI+Y+L    +P L+++ KQ+R+    V+P+  YYV++GS++QAP +  +  +R+  AL
Sbjct:   21 FRNPQWPANF-INRDNVLDYFCNQGNVFYEMNSCNQQIKMQNITNRSVDECLRNMQGIQYVLW-YSQPPLYIVCKQRRNNATNVSPIAYYYVINGSVHQAPDMHTLVQSRLLGAL 133          
BLAST of CX288699 vs. ExPASy Swiss-Prot
Match: MED6_CAEEL (Mediator of RNA polymerase II transcription subunit 6 OS=Caenorhabditis elegans GN=mdt-6 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.942e-11
Identity = 38/117 (32.48%), Postives = 72/117 (61.54%), Query Frame = 3
Query:   24 ICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLKMRSIHPLDISQ-LSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 365
            + FR+  W   + ++++ + DYF    + FY+    N+Q++M++I    + + L  M GI+Y+L    +P LF+I KQ+R+    V+P+  YYV++GS++QAP + ++  +R+  AL
Sbjct:   19 VSFRNPQWPPNF-INKDNVLDYFCNQANAFYEMNSCNQQIRMQNIVNRTVEECLRTMPGIQYVLW-YSQPPLFIICKQRRNNVTNVSPIAYYYVINGSVHQAPDMYSLVQSRLLGAL 133          
The following BLAST results are available for this feature:
BLAST of CX288699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
MED6_DEBHA1.698e-1535.83Mediator of RNA polymerase II transcription subuni... [more]
MED6_KLULA3.782e-1530.34Mediator of RNA polymerase II transcription subuni... [more]
MED6_USTMA4.939e-1535.14Mediator of RNA polymerase II transcription subuni... [more]
MED6_SCHPO9.315e-1434.38Mediator of RNA polymerase II transcription subuni... [more]
MED6_ENCCU1.030e-1240.17Mediator of RNA polymerase II transcription subuni... [more]
MED6_ASHGO2.294e-1229.85Mediator of RNA polymerase II transcription subuni... [more]
MED6_PICST2.996e-1232.69Mediator of RNA polymerase II transcription subuni... [more]
MED6_CAEBR1.139e-1133.04Mediator of RNA polymerase II transcription subuni... [more]
MED6_CAEEL1.942e-1132.48Mediator of RNA polymerase II transcription subuni... [more]

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Properties
Property NameValue
Genbank descriptionC02003D05SK IF1 Citrus clementina cDNA clone C02003D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288699 ID=CX288699; Name=CX288699; organism=Citrus clementina; type=EST; length=375bp
CACCGGGTACGGACATGACGGGGATCTGCTTCAGGGACCAATTGTGGCTA
AACACATACCCACTTGATCGAAACATGATATTTGATTACTTCACGTTGTC
TCTGTTTTATGATAGGACTTGCAACAATGAGCAGCTCAAAATGCGGTCCA
TCCACCCTCTAGACATCTCTCAACTCTCGAAAATGACTGGCATTGAATAC
ATGCTTAGTGAAGTTATGGAGCCCCACCTCTTTGTTATCCGTAAGCAAAA
AAGGGATGGTCCTGAGAAAGTCACACCAATGCTCACTTATTATGTATTGG
ATGGTTCAATTTACCAAGCACCACAACTTTGCAATGTCTTTTCAGCTAGA
ATTGGACGGGCTCTCCACTATATAC
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