CX288699
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288699 vs. ExPASy Swiss-Prot
Match: MED6_DEBHA (Mediator of RNA polymerase II transcription subunit 6 OS=Debaryomyces hansenii GN=MED6 PE=3 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 1.698e-15 Identity = 43/120 (35.83%), Postives = 74/120 (61.67%), Query Frame = 3 Query: 24 ICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLKMR--------SIHPLDI--SQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 353 I +++ W+ + L + DYF+ S FYDRT NN+ L+M+ +I+P S+L +MTGIE++++ EP ++IRKQ R P++V YY++ +IYQAP++ ++ S+R+ Sbjct: 9 IQWKNPEWIQQFGLFTGNVLDYFSESPFYDRTSNNQVLRMQFQFQQIPPNINPQKYLQSKLVEMTGIEFIIAASREPDFWIIRKQTRLSPKQVNIEQDYYIIGANIYQAPKVYDILSSRL 128
BLAST of CX288699 vs. ExPASy Swiss-Prot
Match: MED6_KLULA (Mediator of RNA polymerase II transcription subunit 6 OS=Kluyveromyces lactis GN=MED6 PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 3.782e-15 Identity = 44/145 (30.34%), Postives = 69/145 (47.59%), Query Frame = 3 Query: 45 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLKMRS------------------------------------------IHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 353 W+ T+ L + + DYF+ S F+D+T NN+ +KM+ +H + +L KM GIEY+L V EP L++IRKQ+RDGP K T + YYV+ ++YQ+P + + R+ Sbjct: 16 WIQTFGLHTDNVLDYFSESPFFDKTSNNQVVKMQQQFSQQSQVPGSMPLGSSSGIGAAAGAGTVSPSDRSLIWERYPVHAMLEKELMKMKGIEYILVLVREPDLWIIRKQQRDGPTKTTTLRDYYVIGSAVYQSPTVYKIIQNRL 160
BLAST of CX288699 vs. ExPASy Swiss-Prot
Match: MED6_USTMA (Mediator of RNA polymerase II transcription subunit 6 OS=Ustilago maydis GN=MED6 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 4.939e-15 Identity = 39/111 (35.14%), Postives = 64/111 (57.66%), Query Frame = 3 Query: 57 YPLDRNMIFDYFTLSLFYDRTCNNEQLKMRSIH------------PLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 353 +PL + + YF S F+DR NNEQ++M++I + +L + TG+E++L EP FV++K+ R P + TP+ YYV++ SIYQAP L ++ + R+ Sbjct: 53 HPLTEHNVMAYFATSPFFDRRSNNEQIRMQNIANGIQNLSGGMGAKQEEQELKRFTGLEFVLVHSREPTCFVVQKRWRTSPTETTPLAAYYVINDSIYQAPDLYSILATRL 163
BLAST of CX288699 vs. ExPASy Swiss-Prot
Match: MED6_SCHPO (Mediator of RNA polymerase II transcription subunit 6 OS=Schizosaccharomyces pombe GN=med6 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 9.315e-14 Identity = 44/128 (34.38%), Postives = 71/128 (55.47%), Query Frame = 3 Query: 3 PGTDMTGICFRDQLWLNTYP-LDRNMIFDYFTLSLFYDRTCNNEQLKMRS-IHPLDI----SQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALH 368 P D+T I +R W+ + L + +YF+ S FY NNE LKM+S + LD+ SQL ++TGI++++ P L+VI+KQ R +V P+ Y+V + +IY AP + + R+ A + Sbjct: 7 PSVDLTSIQWRMPEWVQSMGGLRTENVLEYFSQSPFYSHKSNNEMLKMQSQFNALDLGDLNSQLKRLTGIQFVIIHERPPFLWVIQKQNRLNENEVKPLTVYFVCNENIYMAPNAYTLLATRMLNATY 134
BLAST of CX288699 vs. ExPASy Swiss-Prot
Match: MED6_ENCCU (Mediator of RNA polymerase II transcription subunit 6 OS=Encephalitozoon cuniculi GN=MED6 PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.030e-12 Identity = 47/117 (40.17%), Postives = 68/117 (58.12%), Query Frame = 3 Query: 24 ICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLKMRS-IHPLD-ISQLSKMTGIEYML-SEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 365 I F DQ +L + PLD + +YF+ S FYD++CNNE LKM++ LD S+L M GI Y + S E LFVIRK G T + YY++ G +Y AP +++ R+G ++ Sbjct: 8 ISFVDQRFLGSKPLDDTNVLEYFSGSPFYDKSCNNEILKMQTQFRGLDQKSKLFSMVGIFYEVESSNHEKTLFVIRKAYNHGDTAET-LGMYYIIHGHVYAAPTNYSIYRCRMGDSM 123
BLAST of CX288699 vs. ExPASy Swiss-Prot
Match: MED6_ASHGO (Mediator of RNA polymerase II transcription subunit 6 OS=Ashbya gossypii GN=MED6 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 2.294e-12 Identity = 40/134 (29.85%), Postives = 68/134 (50.75%), Query Frame = 3 Query: 45 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLKMRS-------------------------------IHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 353 W+ ++ L + + DYF+ S F+D+T NN +KM+ + L +L+K+ GIEY+L+ V EP +V+RKQ+R G ++VT + YY++ ++YQAP +V R+ Sbjct: 16 WIQSFGLRTDNVLDYFSQSPFFDKTSNNHVVKMQQQFSQQMPPAPQTARPKAAPSAERQAIWDRYPAYALLEQELAKLKGIEYVLAHVREPDFWVVRKQRRAG-DRVTALNDYYIIGANVYQAPTAYSVVQNRL 148
BLAST of CX288699 vs. ExPASy Swiss-Prot
Match: MED6_PICST (Mediator of RNA polymerase II transcription subunit 6 OS=Pichia stipitis GN=MED6 PE=3 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 2.996e-12 Identity = 34/104 (32.69%), Postives = 61/104 (58.65%), Query Frame = 3 Query: 78 IFDYFTLSLFYDRTCNNEQLKMR------------SIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 353 + +YF+LS FYDRT NN+QL M+ + +L +MTG+ ++++ EP ++IRKQ + P+ + YY++ ++YQAP++ +V S+R+ Sbjct: 27 VLEYFSLSPFYDRTSNNQQLMMQFQFQQIQIPVNTTFQQFFQEKLREMTGVVFVIAYNREPDFWIIRKQLQLDPQNAVTLQDYYIIGANVYQAPKVYDVLSSRL 130
BLAST of CX288699 vs. ExPASy Swiss-Prot
Match: MED6_CAEBR (Mediator of RNA polymerase II transcription subunit 6 OS=Caenorhabditis briggsae GN=mdt-6 PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 1.139e-11 Identity = 38/115 (33.04%), Postives = 71/115 (61.74%), Query Frame = 3 Query: 30 FRDQLWLNTYPLDRNMIFDYFTL--SLFYDRTCNNEQLKMRSIHPLDISQ-LSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 365 FR+ W + ++R+ + DYF ++FY+ N+Q+KM++I + + L M GI+Y+L +P L+++ KQ+R+ V+P+ YYV++GS++QAP + + +R+ AL Sbjct: 21 FRNPQWPANF-INRDNVLDYFCNQGNVFYEMNSCNQQIKMQNITNRSVDECLRNMQGIQYVLW-YSQPPLYIVCKQRRNNATNVSPIAYYYVINGSVHQAPDMHTLVQSRLLGAL 133
BLAST of CX288699 vs. ExPASy Swiss-Prot
Match: MED6_CAEEL (Mediator of RNA polymerase II transcription subunit 6 OS=Caenorhabditis elegans GN=mdt-6 PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 1.942e-11 Identity = 38/117 (32.48%), Postives = 72/117 (61.54%), Query Frame = 3 Query: 24 ICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLKMRSIHPLDISQ-LSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 365 + FR+ W + ++++ + DYF + FY+ N+Q++M++I + + L M GI+Y+L +P LF+I KQ+R+ V+P+ YYV++GS++QAP + ++ +R+ AL Sbjct: 19 VSFRNPQWPPNF-INKDNVLDYFCNQANAFYEMNSCNQQIRMQNIVNRTVEECLRTMPGIQYVLW-YSQPPLFIICKQRRNNVTNVSPIAYYYVINGSVHQAPDMYSLVQSRLLGAL 133 The following BLAST results are available for this feature:
BLAST of CX288699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288699 ID=CX288699; Name=CX288699; organism=Citrus clementina; type=EST; length=375bpback to top |